Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015983 Camellia sinensis var. sinensis HOM05D002711 ORTHO05D110675 1.1e-40 169.5 79 100.0
CSS0042642 Camellia sinensis var. sinensis HOM05D002711 ORTHO05D003390 3.0e-11 71.6 34 88.2
Atru.chr1.240 Acer truncatum HOM05D002711 ORTHO05D003390 8.1e-09 63.5 78 44.9
Gohir.D13G021200 Gossypium hirsutum HOM05D002711 ORTHO05D003390 1.1e-08 63.2 32 84.4
Lj2A27T67 Lonicera japonica HOM05D002711 ORTHO05D003390 1.1e-08 63.2 32 81.2
Thecc.05G114300 Theobroma cacao HOM05D002711 ORTHO05D003390 1.1e-08 63.2 30 86.7
Hund22572 Selenicereus undatus HOM05D002711 ORTHO05D003390 2.4e-08 62.0 32 81.2
Actinidia18403 Actinidia chinensis HOM05D002711 ORTHO05D003390 3.1e-08 61.6 33 75.8
Gorai.013G024000 Gossypium raimondii HOM05D002711 ORTHO05D003390 3.1e-08 61.6 30 86.7
Sc16g0010730 Simmondsia chinensis HOM05D002711 ORTHO05D003390 4.0e-08 61.2 33 75.8
Ciclev10015040m.g Citrus clementina HOM05D002711 ORTHO05D003390 5.3e-08 60.8 35 71.4
Atru.chr10.147 Acer truncatum HOM05D002711 ORTHO05D003390 9.0e-08 60.1 33 78.8
Dinv32139 Davidia involucrata HOM05D002711 ORTHO05D003390 9.0e-08 60.1 34 73.5
FAN16G1786 Fragaria x ananassa HOM05D002711 ORTHO05D003390 9.0e-08 60.1 30 83.3
Prupe.7G268500 Prunus persica HOM05D002711 ORTHO05D003390 9.0e-08 60.1 32 81.2
RcHm_v2.0_Chr5g0011751 Rosa chinensis HOM05D002711 ORTHO05D003390 9.0e-08 60.1 30 83.3
TAR362G1024 Trochodendron aralioides HOM05D002711 ORTHO05D003390 9.0e-08 60.1 32 81.2
vmacro00714 Vaccinium macrocarpon HOM05D002711 ORTHO05D003390 9.0e-08 60.1 29 86.2
Atru.chr10.144 Acer truncatum HOM05D002711 ORTHO05D003390 1.2e-07 59.7 33 78.8
Potri.008G078800 Populus trichocarpa HOM05D002711 ORTHO05D003390 1.2e-07 59.7 33 78.8
MELO3C015038.2 Cucumis melo HOM05D002711 ORTHO05D003390 1.5e-07 59.3 35 71.4
CsaV3_5G014210 Cucumis sativus L. HOM05D002711 ORTHO05D003390 1.5e-07 59.3 35 71.4
Rhsim09G0005500 Rhododendron simsii HOM05D002711 ORTHO05D003390 1.5e-07 59.3 34 67.6
Rhsim09G0005800 Rhododendron simsii HOM05D002711 ORTHO05D003390 1.5e-07 59.3 34 67.6
VMungo0251G0476 Vigna mungo HOM05D002711 ORTHO05D003390 1.5e-07 59.3 30 80.0
Duzib177G0931 Durio zibethinus HOM05D002711 ORTHO05D003390 2.0e-07 58.9 30 83.3
Glyma.05G167700 Glycine max HOM05D002711 ORTHO05D003390 2.0e-07 58.9 29 82.8
MD15G1145900 Malus domestica HOM05D002711 ORTHO05D003390 2.0e-07 58.9 32 78.1
Gohir.A13G020700 Gossypium hirsutum HOM05D002711 ORTHO05D003390 2.6e-07 58.5 30 80.0
Nn1g09508 Nelumbo nucifera HOM05D002711 ORTHO05D003390 2.6e-07 58.5 35 71.4
Potri.010G178200 Populus trichocarpa HOM05D002711 ORTHO05D003390 2.6e-07 58.5 33 78.8
Sabra08G0058500 Salix brachista HOM05D002711 ORTHO05D003390 2.6e-07 58.5 33 75.8
GSVIVG01004003001 Vitis vinifera HOM05D002711 ORTHO05D003390 2.6e-07 58.5 33 75.8
AUR62002447 Chenopodium quinoa HOM05D002711 ORTHO05D003390 3.4e-07 58.2 33 75.8
AUR62023742 Chenopodium quinoa HOM05D002711 ORTHO05D003390 3.4e-07 58.2 33 75.8
MD02G1002700 Malus domestica HOM05D002711 ORTHO05D003390 3.4e-07 58.2 32 78.1
Ca_04798_v3 Cicer arietinum L. HOM05D002711 ORTHO05D003390 4.5e-07 57.8 29 79.3
ECA233G1097 Erigeron canadensis HOM05D002711 ORTHO05D003390 4.5e-07 57.8 29 82.8
FAN25G0945 Fragaria x ananassa HOM05D002711 ORTHO05D003390 4.5e-07 57.8 30 80.0
Atru.chr3.1910 Acer truncatum HOM05D002711 ORTHO05D003390 5.8e-07 57.4 78 43.6
Cfa006228 Carpinus fangiana HOM05D002711 ORTHO05D003390 5.8e-07 57.4 35 68.6
Eucgr.L00052 Eucalyptus grandis HOM05D002711 ORTHO05D003390 5.8e-07 57.4 29 82.8
Manes.12G000300 Manihot esculenta HOM05D002711 ORTHO05D003390 5.8e-07 57.4 35 71.4
Prupe.4G067100 Prunus persica HOM05D002711 ORTHO05D003390 5.8e-07 57.4 33 69.7
Atru.chr1.241 Acer truncatum HOM05D002711 ORTHO05D003390 7.6e-07 57.0 78 42.3
CiPaw.01G199800 Carya illinoinensis HOM05D002711 ORTHO05D003390 7.6e-07 57.0 34 70.6
FvH4_3g07270 Fragaria vesca HOM05D002711 ORTHO05D003390 7.6e-07 57.0 30 80.0
FAN11G2288 Fragaria x ananassa HOM05D002711 ORTHO05D003390 7.6e-07 57.0 30 80.0
Glyma.08G126100 Glycine max HOM05D002711 ORTHO05D003390 7.6e-07 57.0 29 79.3
PGR031G3488 Punica granatum HOM05D002711 ORTHO05D003390 7.6e-07 57.0 32 75.0
Sabra10G0136800 Salix brachista HOM05D002711 ORTHO05D003390 7.6e-07 57.0 33 75.8
Hund21937 Selenicereus undatus HOM05D002711 ORTHO05D003390 7.6e-07 57.0 29 82.8
Cpa.g.sc250.14 Carica papaya HOM05D002711 ORTHO05D003390 9.9e-07 56.6 34 70.6
Dinv17150 Davidia involucrata HOM05D002711 ORTHO05D003390 9.9e-07 56.6 33 75.8
Hma1.2p1_0108F.1_g051990 Hydrangea macrophylla HOM05D002711 ORTHO05D003390 9.9e-07 56.6 34 70.6
Lj4g0026910 Lotus japonicus HOM05D002711 ORTHO05D003390 9.9e-07 56.6 29 79.3
MD10G1275300 Malus domestica HOM05D002711 ORTHO05D003390 9.9e-07 56.6 33 69.7
CANSAT64G0314 Cannabis sativa HOM05D002711 ORTHO05D003390 1.3e-06 56.2 32 71.9
MD00G1009000 Malus domestica HOM05D002711 ORTHO05D003390 1.3e-06 56.2 33 69.7
Manes.01G018500 Manihot esculenta HOM05D002711 ORTHO05D003390 1.3e-06 56.2 34 67.6
HPP92_011448 Vanilla planifolia HOM05D002711 ORTHO05D003390 1.3e-06 56.2 34 70.6
Cfa008493 Carpinus fangiana HOM05D002711 ORTHO05D003390 1.7e-06 55.8 73 43.8
Migut.G00852 Erythranthe guttata HOM05D002711 ORTHO05D003390 1.7e-06 55.8 34 64.7
Gohir.D09G213100 Gossypium hirsutum HOM05D002711 ORTHO05D003390 1.7e-06 55.8 42 57.1
Gorai.006G233200 Gossypium raimondii HOM05D002711 ORTHO05D003390 1.7e-06 55.8 42 57.1
Potri.007G142300 Populus trichocarpa HOM05D002711 ORTHO05D003390 1.7e-06 55.8 34 67.6
CSS0022978 Camellia sinensis var. sinensis HOM05D002711 ORTHO05D003390 2.2e-06 55.5 33 69.7
Medtr8g088600 Medicago truncatula HOM05D002711 ORTHO05D003390 2.2e-06 55.5 29 79.3
Oeu050308.1 Olea europaea HOM05D002711 ORTHO05D003390 2.2e-06 55.5 33 69.7
Lsat_1_v5_gn_8_23160 Lactuca sativa HOM05D002711 ORTHO05D003390 2.9e-06 55.1 34 67.6
Thecc.04G158900 Theobroma cacao HOM05D002711 ORTHO05D003390 2.9e-06 55.1 29 75.9
TWI18G0758 Tripterygium wilfordii HOM05D002711 ORTHO05D003390 2.9e-06 55.1 30 76.7
Migut.N03047 Erythranthe guttata HOM05D002711 ORTHO05D003390 3.8e-06 54.7 34 70.6
Sabra07G0114100 Salix brachista HOM05D002711 ORTHO05D003390 3.8e-06 54.7 34 67.6
Sabra07G0116800 Salix brachista HOM05D002711 ORTHO05D003390 3.8e-06 54.7 34 67.6
CiPaw.07G084300 Carya illinoinensis HOM05D002711 ORTHO05D003390 4.9e-06 54.3 33 66.7
Ciclev10015044m.g Citrus clementina HOM05D002711 ORTHO05D003390 4.9e-06 54.3 30 73.3
QL10p059641 Quercus lobata HOM05D002711 ORTHO05D003390 4.9e-06 54.3 29 79.3
Sed0025412 Sechium edule HOM05D002711 ORTHO05D003390 4.9e-06 54.3 35 62.9
EL10Ac3g06138 Beta vulgaris HOM05D002711 ORTHO05D003390 6.4e-06 53.9 31 74.2
EL10Ac4g10038 Beta vulgaris HOM05D002711 ORTHO05D003390 6.4e-06 53.9 33 72.7
CAN.G51.10 Capsicum annuum HOM05D002711 ORTHO05D003390 6.4e-06 53.9 33 69.7
ClCG03G010140 Citrullus lanatus HOM05D002711 ORTHO05D003390 6.4e-06 53.9 29 75.9
Sed0020560 Sechium edule HOM05D002711 ORTHO05D003390 6.4e-06 53.9 30 73.3
MSTRG.9722 Avicennia marina HOM05D002711 ORTHO05D003390 8.4e-06 53.5 34 64.7
Haze_11157 Corylus avellana HOM05D002711 ORTHO05D003390 8.4e-06 53.5 29 75.9
Lj1A572G29 Lonicera japonica HOM05D002711 ORTHO05D003390 8.4e-06 53.5 30 80.0
PGR042G2922 Punica granatum HOM05D002711 ORTHO05D003390 8.4e-06 53.5 29 79.3


User provided reference genes

Program Settings