Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015982 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 1.4e-182 642.9 333 100.0
CSS0046697 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 1.5e-109 400.2 370 64.1
Actinidia10609 Actinidia chinensis HOM05D005438 ORTHO05D006744 1.0e-105 387.5 375 62.4
Rhsim02G0235700 Rhododendron simsii HOM05D005438 ORTHO05D006744 1.1e-104 384.0 372 60.5
vmacro11410 Vaccinium macrocarpon HOM05D005438 ORTHO05D006744 4.1e-102 375.6 355 62.8
Dinv37597 Davidia involucrata HOM05D005438 ORTHO05D006744 7.0e-102 374.8 371 59.0
Nitab4.5_0007906g0070 Nicotiana tabacum HOM05D005438 ORTHO05D006744 2.7e-98 362.8 367 58.3
CAN.G532.38 Capsicum annuum HOM05D005438 ORTHO05D006744 8.8e-97 357.8 363 58.4
PGSC0003DMG400012320 Solanum tuberosum HOM05D005438 ORTHO05D006744 5.7e-96 355.1 363 58.7
Nitab4.5_0003015g0090 Nicotiana tabacum HOM05D005438 ORTHO05D006744 7.4e-96 354.8 368 57.6
CiPaw.11G129800 Carya illinoinensis HOM05D005438 ORTHO05D006744 1.8e-94 350.1 372 57.3
TAR374G1319 Trochodendron aralioides HOM05D005438 ORTHO05D006744 5.3e-94 348.6 369 56.9
Ciclev10020644m.g Citrus clementina HOM05D005438 ORTHO05D006744 2.0e-93 346.7 374 57.0
Solyc08g081580.4 Solanum lycopersicum HOM05D005438 ORTHO05D006744 3.5e-93 345.9 358 57.8
Peaxi162Scf00074g01737 Petunia axillaris HOM05D005438 ORTHO05D006744 5.9e-93 345.1 365 55.9
ECA233G5263 Erigeron canadensis HOM05D005438 ORTHO05D006744 1.9e-91 340.1 368 55.7
QL12p031793 Quercus lobata HOM05D005438 ORTHO05D006744 2.5e-91 339.7 408 52.9
Atru.BG.199.p Acer truncatum HOM05D005438 ORTHO05D006744 4.2e-91 339.0 340 59.4
Atru.chr9.2115 Acer truncatum HOM05D005438 ORTHO05D006744 4.2e-91 339.0 374 55.9
GSVIVG01019417001 Vitis vinifera HOM05D005438 ORTHO05D006744 4.2e-91 339.0 370 54.9
Thecc.03G286500 Theobroma cacao HOM05D005438 ORTHO05D006744 9.4e-91 337.8 368 56.2
VMungo0251G0328 Vigna mungo HOM05D005438 ORTHO05D006744 3.6e-90 335.9 372 54.0
Phvul.002G293100 Phaseolus vulgaris HOM05D005438 ORTHO05D006744 4.7e-90 335.5 371 53.6
COL.COLO4_08362 Corchorus olitorius HOM05D005438 ORTHO05D006744 6.1e-90 335.1 370 55.7
HanXRQChr02g0049721 Helianthus annuus HOM05D005438 ORTHO05D006744 6.1e-90 335.1 368 56.2
CsaV3_5G002390 Cucumis sativus L. HOM05D005438 ORTHO05D006744 4.0e-89 332.4 370 53.8
Sopen08g029890 Solanum pennellii HOM05D005438 ORTHO05D006744 4.0e-89 332.4 361 54.8
Gohir.A02G105300 Gossypium hirsutum HOM05D005438 ORTHO05D006744 1.5e-88 330.5 370 55.1
arahy.Tifrunner.gnm1.ann1.I29YTG Arachis hypogaea HOM05D005438 ORTHO05D006744 2.0e-88 330.1 364 54.4
arahy.Tifrunner.gnm1.ann1.Y7QUAU Arachis hypogaea HOM05D005438 ORTHO05D006744 2.0e-88 330.1 362 54.4
Gohir.D03G078500 Gossypium hirsutum HOM05D005438 ORTHO05D006744 2.0e-88 330.1 370 54.9
MELO3C005715.2 Cucumis melo HOM05D005438 ORTHO05D006744 3.4e-88 329.3 370 53.0
Duzib084G0802 Durio zibethinus HOM05D005438 ORTHO05D006744 3.4e-88 329.3 371 54.2
Gorai.003G085600 Gossypium raimondii HOM05D005438 ORTHO05D006744 1.7e-87 327.0 371 55.0
TWI60G1446 Tripterygium wilfordii HOM05D005438 ORTHO05D006744 2.2e-87 326.6 376 53.2
Glyma.08G018100 Glycine max HOM05D005438 ORTHO05D006744 4.8e-87 325.5 368 54.1
Nn1g01673 Nelumbo nucifera HOM05D005438 ORTHO05D006744 6.3e-87 325.1 391 51.4
Ca_10950_v3 Cicer arietinum L. HOM05D005438 ORTHO05D006744 1.1e-86 324.3 371 53.6
Duzib205G0010 Durio zibethinus HOM05D005438 ORTHO05D006744 1.8e-86 323.6 367 54.8
Sed0027839 Sechium edule HOM05D005438 ORTHO05D006744 2.0e-85 320.1 367 54.8
Cc08_g15250 Coffea canephora HOM05D005438 ORTHO05D006744 5.9e-85 318.5 380 53.2
Glyma.05G211800 Glycine max HOM05D005438 ORTHO05D006744 5.9e-85 318.5 369 53.1
MD14G1111900 Malus domestica HOM05D005438 ORTHO05D006744 2.2e-84 316.6 366 53.0
DCAR_004611 Daucus carota HOM05D005438 ORTHO05D006744 3.8e-84 315.8 357 52.9
Prupe.5G106500 Prunus persica HOM05D005438 ORTHO05D006744 8.5e-84 314.7 371 52.3
CANSAT21G0041 Cannabis sativa HOM05D005438 ORTHO05D006744 1.5e-83 313.9 375 52.0
Eucgr.L02379 Eucalyptus grandis HOM05D005438 ORTHO05D006744 1.5e-83 313.9 369 53.1
Lj4g0011941 Lotus japonicus HOM05D005438 ORTHO05D006744 1.5e-83 313.9 377 52.3
MBI11_g09068_MAGBIO Magnolia biondii HOM05D005438 ORTHO05D006744 1.9e-83 313.5 350 53.1
Eucgr.D01812 Eucalyptus grandis HOM05D005438 ORTHO05D006744 2.5e-83 313.2 369 53.1
FvH4_5g03190 Fragaria vesca HOM05D005438 ORTHO05D006744 4.2e-83 312.4 369 53.4
FAN18G2027 Fragaria x ananassa HOM05D005438 ORTHO05D006744 7.2e-83 311.6 369 53.4
Migut.J01399 Erythranthe guttata HOM05D005438 ORTHO05D006744 1.6e-82 310.5 365 53.4
FAN13G0364 Fragaria x ananassa HOM05D005438 ORTHO05D006744 2.7e-82 309.7 369 52.8
Lalb_Chr05g0224491 Lupinus albus HOM05D005438 ORTHO05D006744 2.7e-82 309.7 370 52.2
Psat7g029680 Pisum sativum HOM05D005438 ORTHO05D006744 4.7e-82 308.9 370 51.4
Aqoxy7G00195 Aquilegia oxysepala HOM05D005438 ORTHO05D006744 1.0e-81 307.8 380 51.3
Gorai.008G250200 Gossypium raimondii HOM05D005438 ORTHO05D006744 1.0e-81 307.8 372 53.0
Medtr8g098940 Medicago truncatula HOM05D005438 ORTHO05D006744 1.0e-81 307.8 372 52.2
ClCG01G002320 Citrullus lanatus HOM05D005438 ORTHO05D006744 1.8e-81 307.0 360 52.8
Lsat_1_v5_gn_3_8761 Lactuca sativa HOM05D005438 ORTHO05D006744 3.0e-81 306.2 380 51.1
Gohir.D12G233900 Gossypium hirsutum HOM05D005438 ORTHO05D006744 6.8e-81 305.1 372 52.2
Manes.01G057900 Manihot esculenta HOM05D005438 ORTHO05D006744 6.8e-81 305.1 404 49.5
Lj2C178T12 Lonicera japonica HOM05D005438 ORTHO05D006744 1.5e-80 303.9 377 52.8
RcHm_v2.0_Chr7g0196591 Rosa chinensis HOM05D005438 ORTHO05D006744 1.5e-80 303.9 373 51.7
FAN08G1515 Fragaria x ananassa HOM05D005438 ORTHO05D006744 2.6e-80 303.1 372 51.6
Potri.003G132600 Populus trichocarpa HOM05D005438 ORTHO05D006744 7.5e-80 301.6 415 47.2
FAN04G0810 Fragaria x ananassa HOM05D005438 ORTHO05D006744 1.7e-79 300.4 373 51.7
AUR62019752 Chenopodium quinoa HOM05D005438 ORTHO05D006744 4.8e-79 298.9 367 51.0
THA.LOC104817794 Tarenaya hassleriana HOM05D005438 ORTHO05D006744 6.3e-79 298.5 382 51.6
PGR031G2565 Punica granatum HOM05D005438 ORTHO05D006744 1.8e-78 297.0 368 52.4
Hund11433 Selenicereus undatus HOM05D005438 ORTHO05D006744 3.1e-78 296.2 374 50.5
TPR.G12953 Trifolium pratense HOM05D005438 ORTHO05D006744 3.1e-78 296.2 370 49.7
Sabra03G0095000 Salix brachista HOM05D005438 ORTHO05D006744 9.1e-78 294.7 414 46.4
AUR62010754 Chenopodium quinoa HOM05D005438 ORTHO05D006744 4.5e-77 292.4 367 50.4
Migut.A00720 Erythranthe guttata HOM05D005438 ORTHO05D006744 3.8e-76 289.3 373 49.9
Ah.12g051920 Amaranthus hybridus HOM05D005438 ORTHO05D006744 8.6e-76 288.1 385 48.1
PSO266G0069 Papaver somniferum HOM05D005438 ORTHO05D006744 7.2e-75 285.0 391 46.8
Zm00001eb001860 Zea mays HOM05D005438 ORTHO05D006744 9.5e-75 284.6 389 47.3
ATR0661G541 Amborella trichopoda HOM05D005438 ORTHO05D006744 8.0e-74 281.6 394 44.7
PSO017G3503 Papaver somniferum HOM05D005438 ORTHO05D006744 4.0e-73 279.3 392 45.7
SGA_v2.0_scaffold173G39139 Striga asiatica HOM05D005438 ORTHO05D006744 5.2e-73 278.9 401 48.1
Carub.0002s0086 Capsella rubella HOM05D005438 ORTHO05D006744 6.8e-73 278.5 398 47.0
PSO478G3903 Papaver somniferum HOM05D005438 ORTHO05D006744 8.9e-73 278.1 391 45.8
Os03g0125300 Oryza sativa ssp. japonica HOM05D005438 ORTHO05D006744 1.2e-72 277.7 388 46.1
Gohir.A12G233400 Gossypium hirsutum HOM05D005438 ORTHO05D006744 2.6e-72 276.6 355 49.6
BcaB07g31422 Brassica carinata HOM05D005438 ORTHO05D006744 3.4e-72 276.2 405 45.9
Thhalv10023525m.g Eutrema salsugineum HOM05D005438 ORTHO05D006744 1.3e-71 274.2 394 48.0
CDE04G0809 Ceratophyllum demersum HOM05D005438 ORTHO05D006744 1.7e-71 273.9 345 51.3
Aa31LG2G1070 Aethionema arabicum HOM05D005438 ORTHO05D006744 3.7e-71 272.7 394 47.2
AL2G11130 Arabidopsis lyrata HOM05D005438 ORTHO05D006744 4.9e-71 272.3 400 47.8
BcaB07g31532 Brassica carinata HOM05D005438 ORTHO05D006744 2.4e-70 270.0 410 46.6
AT1G63980 Arabidopsis thaliana HOM05D005438 ORTHO05D006744 4.1e-70 269.2 404 45.5
EL10Ac5g12834 Beta vulgaris HOM05D005438 ORTHO05D006744 4.1e-70 269.2 350 46.9
BcaC04g22661 Brassica carinata HOM05D005438 ORTHO05D006744 7.0e-70 268.5 405 46.7
C09p18360 Brassica napus HOM05D005438 ORTHO05D006744 9.2e-70 268.1 409 46.9
Sp2g00710 Schrenkiella parvula HOM05D005438 ORTHO05D006744 1.0e-68 264.6 413 45.0
A09p14060 Brassica napus HOM05D005438 ORTHO05D006744 1.3e-68 264.2 402 46.8
BolC9t54729H Brassica oleracea HOM05D005438 ORTHO05D006744 1.3e-68 264.2 415 45.5
MD06G1091000 Malus domestica HOM05D005438 ORTHO05D006744 2.3e-68 263.5 339 49.0
CARHR047000 Cardamine hirsuta HOM05D005438 ORTHO05D006744 2.9e-68 263.1 389 45.8
A09p15160 Brassica napus HOM05D005438 ORTHO05D006744 3.9e-68 262.7 410 45.9
BolC9t54592H Brassica oleracea HOM05D005438 ORTHO05D006744 6.6e-68 261.9 409 46.7
C09p16950 Brassica napus HOM05D005438 ORTHO05D006744 8.6e-68 261.5 407 46.7
HPP92_021018 Vanilla planifolia HOM05D005438 ORTHO05D006744 3.3e-67 259.6 365 47.7
BraA09t37053Z Brassica rapa HOM05D005438 ORTHO05D006744 1.6e-66 257.3 409 46.0
BraA09t37158Z Brassica rapa HOM05D005438 ORTHO05D006744 1.6e-66 257.3 415 44.8
HanXRQChr17g0533211 Helianthus annuus HOM05D005438 ORTHO05D006744 7.5e-64 248.4 368 45.1
Sc01g0009850 Simmondsia chinensis HOM05D005438 ORTHO05D006744 5.4e-62 242.3 319 46.4
CSS0040427 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 6.0e-61 238.8 129 92.2
SEGI_20773 Sequoiadendron giganteum HOM05D005438 ORTHO05D006744 5.2e-57 225.7 426 39.2
unitig_32.g10979 Utricularia gibba HOM05D005438 ORTHO05D006744 9.8e-56 221.5 327 46.8
Haze_08758 Corylus avellana HOM05D005438 ORTHO05D006744 2.6e-48 196.8 313 44.1
SHI31900 Sapria himalayana HOM05D005438 ORTHO05D006744 3.7e-47 193.0 285 44.2
Actinidia28345 Actinidia chinensis HOM05D005438 ORTHO05D006744 5.8e-40 169.1 337 43.6
Pp3c2_28530 Physcomitrium patens HOM05D005438 ORTHO05D006744 1.6e-37 161.0 402 33.8
CDE12G0222 Ceratophyllum demersum HOM05D005438 ORTHO05D006744 9.6e-35 151.8 142 57.7
SMO134G0098 Selaginella moellendorffii HOM05D005438 ORTHO05D006744 1.6e-34 151.0 355 34.4
Cpa.g.sc631.4 Carica papaya HOM05D005438 ORTHO05D006744 1.8e-33 147.5 146 57.5
Mapoly0090s0083 Marchantia polymorpha HOM05D005438 ORTHO05D006744 6.9e-33 145.6 286 36.7
Lsat_1_v5_gn_1_49360 Lactuca sativa HOM05D005438 ORTHO05D006744 1.3e-31 141.4 214 45.8
Lsat_1_v5_gn_5_103140 Lactuca sativa HOM05D005438 ORTHO05D006744 1.3e-31 141.4 214 45.8
Lsat_1_v5_gn_9_38321 Lactuca sativa HOM05D005438 ORTHO05D006744 1.3e-31 141.4 214 45.8
BcaC04g22519 Brassica carinata HOM05D005438 ORTHO05D006744 3.3e-27 126.7 277 38.6
AagrBONN_evm.TU.Sc2ySwM_344.4712 Anthoceros agrestis HOM05D005438 ORTHO05D006744 5.3e-25 119.4 139 48.9
Pp3c7_27020 Physcomitrium patens HOM05D005438 ORTHO05D006744 2.2e-23 114.0 376 30.1
Cpa.g.c39085 Carica papaya HOM05D005438 ORTHO05D006744 3.8e-15 86.7 156 39.7
CBR_g35011 Chara braunii HOM05D005438 ORTHO05D006744 1.3e-12 78.2 80 50.0
Cre07.g347300 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D021338 5.1e-12 76.3 87 46.0
Cre07.g347400 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D006744 5.1e-12 76.3 87 46.0
HanXRQChr16g0521071 Helianthus annuus HOM05D005438 ORTHO05D006744 5.1e-12 76.3 39 92.3
BcaNung05361 Brassica carinata HOM05D005438 ORTHO05D006744 1.1e-11 75.1 199 38.2
ATR0661G444 Amborella trichopoda HOM05D005438 ORTHO05D006744 9.0e-09 65.5 199 30.2
ECA246G3112 Erigeron canadensis HOM05D005438 ORTHO05D006744 1.5e-08 64.7 76 48.7
Cre01.g054000 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D006744 2.9e-07 60.5 79 40.5


User provided reference genes

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