Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015973 Camellia sinensis var. sinensis HOM05D007369 ORTHO05D009369 2.6e-239 831.6 422 100.0
Dinv38329 Davidia involucrata HOM05D007369 ORTHO05D009369 4.5e-154 548.5 439 69.7
Actinidia40222 Actinidia chinensis HOM05D007369 ORTHO05D009369 3.5e-151 538.9 406 73.6
Actinidia23432 Actinidia chinensis HOM05D007369 ORTHO05D009369 7.9e-143 511.1 421 69.6
Rhsim04G0215900 Rhododendron simsii HOM05D007369 ORTHO05D009369 3.1e-139 499.2 443 64.6
Hma1.2p1_0078F.1_g040800 Hydrangea macrophylla HOM05D007369 ORTHO05D009369 8.8e-126 454.5 429 59.0
TAR636G2558 Trochodendron aralioides HOM05D007369 ORTHO05D009369 6.1e-111 405.2 446 54.3
QL06p007318 Quercus lobata HOM05D007369 ORTHO05D009369 1.0e-110 404.4 438 54.6
GSVIVG01017812001 Vitis vinifera HOM05D007369 ORTHO05D009369 1.7e-108 397.1 418 54.5
Thecc.04G277200 Theobroma cacao HOM05D007369 ORTHO05D009369 1.1e-99 367.9 439 51.5
Dinv44429 Davidia involucrata HOM05D007369 ORTHO05D009369 1.8e-99 367.1 349 59.9
Cfa015498 Carpinus fangiana HOM05D007369 ORTHO05D009369 1.2e-98 364.4 438 52.1
Manes.15G017400 Manihot esculenta HOM05D007369 ORTHO05D009369 1.7e-97 360.5 420 50.0
vmacro08206 Vaccinium macrocarpon HOM05D007369 ORTHO05D009369 2.5e-96 356.7 453 51.7
Ciclev10005057m.g Citrus clementina HOM05D007369 ORTHO05D009369 1.8e-94 350.5 440 50.9
Prupe.1G142600 Prunus persica HOM05D007369 ORTHO05D009369 8.8e-94 348.2 435 49.9
Gohir.A09G061800 Gossypium hirsutum HOM05D007369 ORTHO05D009369 2.0e-93 347.1 414 51.2
Gohir.D09G060700 Gossypium hirsutum HOM05D007369 ORTHO05D009369 5.7e-93 345.5 420 50.7
Potri.008G195300 Populus trichocarpa HOM05D007369 ORTHO05D009369 1.4e-91 340.9 438 49.3
CiPaw.02G086900 Carya illinoinensis HOM05D007369 ORTHO05D009369 3.1e-91 339.7 435 50.1
Gorai.006G075300 Gossypium raimondii HOM05D007369 ORTHO05D009369 5.4e-91 339.0 438 49.3
MD13G1174200 Malus domestica HOM05D007369 ORTHO05D009369 3.5e-90 336.3 437 48.7
Duzib052G0382 Durio zibethinus HOM05D007369 ORTHO05D009369 1.1e-88 331.3 420 47.9
Nn3g21294 Nelumbo nucifera HOM05D007369 ORTHO05D009369 2.6e-85 320.1 440 47.7
Oeu044796.2 Olea europaea HOM05D007369 ORTHO05D009369 7.5e-85 318.5 439 47.6
COL.COLO4_13933 Corchorus olitorius HOM05D007369 ORTHO05D009369 7.8e-82 308.5 510 42.9
Duzib151G0340 Durio zibethinus HOM05D007369 ORTHO05D009369 1.0e-81 308.1 435 46.0
Manes.03G190800 Manihot esculenta HOM05D007369 ORTHO05D009369 3.3e-80 303.1 356 51.4
Haze_01056 Corylus avellana HOM05D007369 ORTHO05D009369 1.2e-79 301.2 473 44.4
ATR0706G035 Amborella trichopoda HOM05D007369 ORTHO05D009369 2.1e-79 300.4 448 44.9
RcHm_v2.0_Chr4g0420931 Rosa chinensis HOM05D007369 ORTHO05D009369 1.0e-78 298.1 433 44.6
Glyma.13G214800 Glycine max HOM05D007369 ORTHO05D009369 1.4e-78 297.7 437 45.1
Cc03_g02400 Coffea canephora HOM05D007369 ORTHO05D009369 9.8e-77 291.6 417 46.8
CANSAT78G0356 Cannabis sativa HOM05D007369 ORTHO05D009369 2.2e-76 290.4 439 43.7
TPR.G37368 Trifolium pratense HOM05D007369 ORTHO05D009369 2.9e-76 290.0 422 44.8
MBI19_g37517_MAGBIO Magnolia biondii HOM05D007369 ORTHO05D009369 6.4e-76 288.9 436 45.6
Phvul.006G161000 Phaseolus vulgaris HOM05D007369 ORTHO05D009369 3.2e-75 286.6 437 42.3
CAN.G223.8 Capsicum annuum HOM05D007369 ORTHO05D009369 4.1e-75 286.2 437 43.9
Sopen01g029630 Solanum pennellii HOM05D007369 ORTHO05D009369 4.1e-75 286.2 436 44.0
Glyma.15G098300 Glycine max HOM05D007369 ORTHO05D009369 2.0e-74 283.9 430 44.0
Aqoxy2G03087 Aquilegia oxysepala HOM05D007369 ORTHO05D009369 4.6e-74 282.7 440 44.3
FvH4_4g17160 Fragaria vesca HOM05D007369 ORTHO05D009369 9.5e-72 275.0 438 44.1
FAN12G1425 Fragaria x ananassa HOM05D007369 ORTHO05D009369 9.5e-72 275.0 438 44.1
Medtr8g093650 Medicago truncatula HOM05D007369 ORTHO05D009369 1.6e-71 274.2 469 39.7
VMungo0540G1702 Vigna mungo HOM05D007369 ORTHO05D009369 3.6e-71 273.1 444 42.6
FAN12G3176 Fragaria x ananassa HOM05D007369 ORTHO05D009369 1.4e-70 271.2 438 43.8
Oeu062882.1 Olea europaea HOM05D007369 ORTHO05D009369 1.8e-70 270.8 339 48.1
FAN17G0929 Fragaria x ananassa HOM05D007369 ORTHO05D009369 3.1e-70 270.0 438 42.0
Nitab4.5_0003067g0040 Nicotiana tabacum HOM05D007369 ORTHO05D009369 3.1e-70 270.0 423 43.3
Eucgr.B01264 Eucalyptus grandis HOM05D007369 ORTHO05D009369 2.0e-69 267.3 430 40.5
FAN07G2486 Fragaria x ananassa HOM05D007369 ORTHO05D009369 5.4e-67 259.2 436 42.2
Nn4g26033 Nelumbo nucifera HOM05D007369 ORTHO05D009369 1.6e-66 257.7 432 41.7
Lalb_Chr18g0055751 Lupinus albus HOM05D007369 ORTHO05D009369 2.7e-66 256.9 437 39.6
Solyc01g067700.3 Solanum lycopersicum HOM05D007369 ORTHO05D009369 3.5e-66 256.5 351 45.9
Psat1g187040 Pisum sativum HOM05D007369 ORTHO05D009369 3.0e-65 253.4 488 38.1
Sed0026345 Sechium edule HOM05D007369 ORTHO05D009369 3.6e-63 246.5 402 41.3
arahy.Tifrunner.gnm1.ann1.ED76E0 Arachis hypogaea HOM05D007369 ORTHO05D009369 8.1e-63 245.4 403 41.2
arahy.Tifrunner.gnm1.ann1.IR05CW Arachis hypogaea HOM05D007369 ORTHO05D009369 6.8e-62 242.3 420 41.9
Peaxi162Scf00386g00219 Petunia axillaris HOM05D007369 ORTHO05D009369 5.8e-61 239.2 324 45.4
Nitab4.5_0000197g0120 Nicotiana tabacum HOM05D007369 ORTHO05D009369 9.2e-59 231.9 414 40.3
SalBow2G2600 Salvia bowleyana HOM05D007369 ORTHO05D009369 1.7e-57 227.6 434 39.6
DCAR_002440 Daucus carota HOM05D007369 ORTHO05D009369 3.0e-57 226.9 311 47.6
Ca_00577_v3 Cicer arietinum L. HOM05D007369 ORTHO05D009369 2.1e-55 220.7 344 41.6
Ca_17638_v3 Cicer arietinum L. HOM05D007369 ORTHO05D009369 2.8e-55 220.3 489 35.6
Potri.010G031250 Populus trichocarpa HOM05D007369 ORTHO05D009369 2.8e-55 220.3 212 59.9
FAN22G0049 Fragaria x ananassa HOM05D007369 ORTHO05D009369 6.2e-55 219.2 438 39.7
SGA_v2.0_scaffold57G20253 Striga asiatica HOM05D007369 ORTHO05D009369 9.9e-53 211.8 432 36.6
ClCG05G005770 Citrullus lanatus HOM05D007369 ORTHO05D009369 1.1e-51 208.4 392 38.5
CsaV3_3G014100 Cucumis sativus L. HOM05D007369 ORTHO05D009369 3.2e-51 206.8 405 37.8
LjContig00389g0017607 Lotus japonicus HOM05D007369 ORTHO05D009369 3.5e-50 203.4 363 39.1
TWI73G1273 Tripterygium wilfordii HOM05D007369 ORTHO05D009369 3.5e-50 203.4 226 54.0
Sabra08G0148500 Salix brachista HOM05D007369 ORTHO05D009369 1.2e-47 194.9 171 61.4
Migut.G00214 Erythranthe guttata HOM05D007369 ORTHO05D009369 1.2e-45 188.3 175 58.3
TAR365G0645 Trochodendron aralioides HOM05D007369 ORTHO05D009369 2.0e-45 187.6 245 46.9
Sc13g0003630 Simmondsia chinensis HOM05D007369 ORTHO05D009369 8.4e-44 182.2 359 37.0
THA.LOC104820236 Tarenaya hassleriana HOM05D007369 ORTHO05D009369 4.6e-42 176.4 396 34.3
MELO3C031713.2 Cucumis melo HOM05D007369 ORTHO05D009369 3.9e-41 173.3 416 35.3
HanXRQChr03g0080111 Helianthus annuus HOM05D007369 ORTHO05D009369 5.6e-40 169.5 304 39.8
ECA240G2128 Erigeron canadensis HOM05D007369 ORTHO05D009369 2.1e-39 167.5 395 35.4
FAN17G3125 Fragaria x ananassa HOM05D007369 ORTHO05D009369 1.5e-37 161.4 132 64.4
Mapoly0126s0031 Marchantia polymorpha HOM05D007369 ORTHO05D009369 1.5e-37 161.4 356 35.1
MD16G1175500 Malus domestica HOM05D007369 ORTHO05D009369 3.2e-35 153.7 253 42.3
Atru.chr4.2750 Acer truncatum HOM05D007369 ORTHO05D009369 2.1e-34 151.0 181 45.3
Atru.chr4.2749 Acer truncatum HOM05D007369 ORTHO05D009369 1.9e-32 144.4 156 55.1
Hund24911 Selenicereus undatus HOM05D007369 ORTHO05D009369 4.8e-31 139.8 455 31.4
MD16G1175700 Malus domestica HOM05D007369 ORTHO05D009369 1.4e-30 138.3 93 76.3
Lsat_1_v5_gn_5_50560 Lactuca sativa HOM05D007369 ORTHO05D009369 1.2e-18 98.6 394 29.4
AagrBONN_evm.TU.Sc2ySwM_362.2687 Anthoceros agrestis HOM05D007369 ORTHO05D009369 2.7e-18 97.4 98 52.0
Zm00001eb410560 Zea mays HOM05D007369 ORTHO05D009369 3.1e-14 84.0 159 36.5
SEGI_26846 Sequoiadendron giganteum HOM05D007369 ORTHO05D009369 4.2e-11 73.6 223 29.6
MD16G1175600 Malus domestica HOM05D007369 ORTHO05D009369 1.6e-10 71.6 86 43.0
Mapoly0008s0171 Marchantia polymorpha HOM05D007369 ORTHO05D009369 7.9e-10 69.3 105 38.1
Lalb_Chr20g0118171 Lupinus albus HOM05D007369 ORTHO05D009369 1.0e-09 68.9 56 66.1
PGSC0003DMG401010654 Solanum tuberosum HOM05D007369 ORTHO05D009369 6.7e-09 66.2 51 64.7
HanXRQChr03g0080081 Helianthus annuus HOM05D007369 ORTHO05D009369 2.5e-08 64.3 213 29.1
Lalb_Chr20g0118161 Lupinus albus HOM05D007369 ORTHO05D009369 2.2e-07 61.2 218 27.1
CBR_g38889 Chara braunii HOM05D007369 ORTHO05D009369 3.1e-06 57.4 50 50.0


User provided reference genes

Program Settings