Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015967 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 0.0e+00 1113.6 566 100.0
CSS0022046 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 0.0e+00 1110.5 566 99.6
Actinidia07259 Actinidia chinensis HOM05D004765 ORTHO05D005900 5.0e-286 987.3 560 89.1
Actinidia24229 Actinidia chinensis HOM05D004765 ORTHO05D005900 5.0e-286 987.3 560 88.6
CSS0013873 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 2.8e-284 981.5 553 90.2
CSS0028820 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 8.0e-284 979.9 553 90.2
Dinv08934 Davidia involucrata HOM05D004765 ORTHO05D005900 5.6e-277 957.2 566 85.0
Dinv22819 Davidia involucrata HOM05D004765 ORTHO05D005900 5.8e-274 947.2 560 84.8
vmacro14340 Vaccinium macrocarpon HOM05D004765 ORTHO05D005900 6.4e-273 943.7 552 87.1
GSVIVG01036081001 Vitis vinifera HOM05D004765 ORTHO05D005900 6.6e-270 933.7 560 83.9
Rhsim01G0203800 Rhododendron simsii HOM05D004765 ORTHO05D005900 1.7e-265 919.1 603 79.9
Cfa009988 Carpinus fangiana HOM05D004765 ORTHO05D005900 5.1e-262 907.5 559 81.8
Potri.009G160400 Populus trichocarpa HOM05D004765 ORTHO05D005900 8.6e-262 906.7 561 80.4
CiPaw.14G098100 Carya illinoinensis HOM05D004765 ORTHO05D005900 1.5e-261 906.0 560 80.7
Thecc.09G278900 Theobroma cacao HOM05D004765 ORTHO05D005900 1.5e-261 906.0 563 81.2
Prupe.6G135800 Prunus persica HOM05D004765 ORTHO05D005900 7.3e-261 903.7 556 81.7
Manes.11G164300 Manihot esculenta HOM05D004765 ORTHO05D005900 6.2e-260 900.6 559 79.2
Ciclev10028115m.g Citrus clementina HOM05D004765 ORTHO05D005900 1.8e-259 899.0 560 80.0
RcHm_v2.0_Chr5g0045881 Rosa chinensis HOM05D004765 ORTHO05D005900 2.4e-259 898.7 559 80.7
Sabra09G0125600 Salix brachista HOM05D004765 ORTHO05D005900 3.4e-258 894.8 567 79.4
QL01p011857 Quercus lobata HOM05D004765 ORTHO05D005900 1.3e-257 892.9 563 79.9
MD03G1149800 Malus domestica HOM05D004765 ORTHO05D005900 2.9e-257 891.7 569 79.3
TWI31G1403 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 3.8e-257 891.3 557 80.8
COL.COLO4_34006 Corchorus olitorius HOM05D004765 ORTHO05D005900 6.4e-257 890.6 563 79.9
Potri.004G198200 Populus trichocarpa HOM05D004765 ORTHO05D005900 3.2e-256 888.3 562 78.5
MD11G1168600 Malus domestica HOM05D004765 ORTHO05D005900 1.6e-255 885.9 554 80.5
Glyma.11G181400 Glycine max HOM05D004765 ORTHO05D005900 2.7e-255 885.2 560 79.5
Gorai.009G084100 Gossypium raimondii HOM05D004765 ORTHO05D005900 2.7e-255 885.2 549 80.5
PGR119G0504 Punica granatum HOM05D004765 ORTHO05D005900 2.7e-255 885.2 560 79.6
Glyma.12G091700 Glycine max HOM05D004765 ORTHO05D005900 3.5e-255 884.8 560 79.6
Sabra04G0134200 Salix brachista HOM05D004765 ORTHO05D005900 3.5e-255 884.8 562 78.1
Gohir.D05G082500 Gossypium hirsutum HOM05D004765 ORTHO05D005900 6.0e-255 884.0 549 80.3
Haze_23347 Corylus avellana HOM05D004765 ORTHO05D005900 1.3e-254 882.9 627 73.0
Phvul.011G096100 Phaseolus vulgaris HOM05D004765 ORTHO05D005900 1.3e-254 882.9 563 79.0
Gohir.A05G079600 Gossypium hirsutum HOM05D004765 ORTHO05D005900 1.7e-254 882.5 549 80.3
Cpa.g.sc195.23 Carica papaya HOM05D004765 ORTHO05D005900 6.6e-254 880.6 550 80.2
DCAR_006171 Daucus carota HOM05D004765 ORTHO05D005900 2.5e-253 878.6 553 80.1
TWI79G1303 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 9.6e-253 876.7 557 78.5
FAN16G1441 Fragaria x ananassa HOM05D004765 ORTHO05D005900 1.4e-251 872.8 563 78.0
Cc01_g08830 Coffea canephora HOM05D004765 ORTHO05D005900 1.8e-251 872.5 560 78.8
TPR.G17196 Trifolium pratense HOM05D004765 ORTHO05D005900 2.4e-251 872.1 565 78.1
FAN11G2377 Fragaria x ananassa HOM05D004765 ORTHO05D005900 4.0e-251 871.3 562 77.8
Gorai.006G113500 Gossypium raimondii HOM05D004765 ORTHO05D005900 5.3e-251 870.9 552 79.2
Gohir.D09G096800 Gossypium hirsutum HOM05D004765 ORTHO05D005900 1.5e-250 869.4 552 79.2
Gohir.A09G097000 Gossypium hirsutum HOM05D004765 ORTHO05D005900 2.0e-250 869.0 552 79.0
CANSAT54G2137 Cannabis sativa HOM05D004765 ORTHO05D005900 4.4e-250 867.8 566 76.9
Ca_19442_v3 Cicer arietinum L. HOM05D004765 ORTHO05D005900 5.8e-250 867.5 565 77.7
Medtr4g052530 Medicago truncatula HOM05D004765 ORTHO05D005900 7.6e-250 867.1 585 75.4
MSTRG.18770 Avicennia marina HOM05D004765 ORTHO05D005900 1.9e-248 862.4 566 77.6
FAN21G2648 Fragaria x ananassa HOM05D004765 ORTHO05D005900 9.3e-248 860.1 578 75.6
arahy.Tifrunner.gnm1.ann1.HXUJ4C Arachis hypogaea HOM05D004765 ORTHO05D005900 2.1e-247 859.0 560 77.3
Lalb_Chr01g0004931 Lupinus albus HOM05D004765 ORTHO05D005900 2.7e-247 858.6 546 78.0
Lsat_1_v5_gn_1_77581 Lactuca sativa HOM05D004765 ORTHO05D005900 6.0e-247 857.4 555 77.5
Migut.N02474 Erythranthe guttata HOM05D004765 ORTHO05D005900 7.9e-247 857.1 571 77.2
FAN25G0471 Fragaria x ananassa HOM05D004765 ORTHO05D005900 7.9e-247 857.1 586 74.6
Sc12g0004610 Simmondsia chinensis HOM05D004765 ORTHO05D005900 1.0e-246 856.7 553 77.2
arahy.Tifrunner.gnm1.ann1.E8Y1JT Arachis hypogaea HOM05D004765 ORTHO05D005900 1.3e-246 856.3 560 77.1
Lj3g0002417 Lotus japonicus HOM05D004765 ORTHO05D005900 6.6e-246 854.0 565 76.8
Atru.chr3.3169 Acer truncatum HOM05D004765 ORTHO05D005900 1.5e-245 852.8 545 79.6
Lalb_Chr03g0028231 Lupinus albus HOM05D004765 ORTHO05D005900 1.5e-245 852.8 565 75.4
HanXRQChr01g0024031 Helianthus annuus HOM05D004765 ORTHO05D005900 5.6e-245 850.9 556 75.9
Peaxi162Scf00224g00217 Petunia axillaris HOM05D004765 ORTHO05D005900 2.8e-244 848.6 563 76.9
ECA248G3663 Erigeron canadensis HOM05D004765 ORTHO05D005900 1.1e-243 846.7 554 77.3
Nitab4.5_0003068g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 2.4e-243 845.5 550 78.2
ClCG01G011820 Citrullus lanatus HOM05D004765 ORTHO05D005900 4.0e-243 844.7 560 77.0
Sopen11g027390 Solanum pennellii HOM05D004765 ORTHO05D005900 5.3e-243 844.3 551 77.9
PSO801G0028 Papaver somniferum HOM05D004765 ORTHO05D005900 6.9e-243 844.0 555 77.1
PSO339G1244 Papaver somniferum HOM05D004765 ORTHO05D005900 1.2e-242 843.2 555 76.9
Hund20934 Selenicereus undatus HOM05D004765 ORTHO05D005900 2.6e-242 842.0 550 75.6
Nn6g34806 Nelumbo nucifera HOM05D004765 ORTHO05D005900 4.5e-242 841.3 559 77.6
Nitab4.5_0000227g0370 Nicotiana tabacum HOM05D004765 ORTHO05D005900 4.5e-242 841.3 550 77.8
Solyc11g068670.2 Solanum lycopersicum HOM05D004765 ORTHO05D005900 4.5e-242 841.3 551 77.7
HanXRQChr11g0343661 Helianthus annuus HOM05D004765 ORTHO05D005900 1.3e-241 839.7 556 75.5
Peaxi162Scf00345g01023 Petunia axillaris HOM05D004765 ORTHO05D005900 2.2e-241 839.0 552 76.6
Sed0019641 Sechium edule HOM05D004765 ORTHO05D005900 2.2e-241 839.0 560 75.7
Eucgr.J00522 Eucalyptus grandis HOM05D004765 ORTHO05D005900 6.4e-241 837.4 533 78.0
ATR0081G060 Amborella trichopoda HOM05D004765 ORTHO05D005900 1.1e-240 836.6 557 74.3
Nitab4.5_0008177g0070 Nicotiana tabacum HOM05D004765 ORTHO05D005900 2.1e-239 832.4 611 72.3
Solyc01g009380.3 Solanum lycopersicum HOM05D004765 ORTHO05D005900 4.6e-239 831.2 558 76.0
Duzib170G0619 Durio zibethinus HOM05D004765 ORTHO05D005900 7.9e-239 830.5 563 74.6
Carub.0005s1005 Capsella rubella HOM05D004765 ORTHO05D005900 3.0e-238 828.6 553 75.4
CsaV3_1G015080 Cucumis sativus L. HOM05D004765 ORTHO05D005900 3.9e-238 828.2 559 75.1
THA.LOC104814781 Tarenaya hassleriana HOM05D004765 ORTHO05D005900 3.9e-238 828.2 552 75.4
MELO3C025589.2 Cucumis melo HOM05D004765 ORTHO05D005900 6.7e-238 827.4 559 75.1
CAN.G745.10 Capsicum annuum HOM05D004765 ORTHO05D005900 3.3e-237 825.1 547 76.2
Nitab4.5_0000731g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 3.3e-237 825.1 549 77.4
CARHR104550 Cardamine hirsuta HOM05D004765 ORTHO05D005900 7.4e-237 823.9 551 75.0
Sp5g16890 Schrenkiella parvula HOM05D004765 ORTHO05D005900 8.1e-236 820.5 560 73.9
Thhalv10010249m.g Eutrema salsugineum HOM05D004765 ORTHO05D005900 1.1e-235 820.1 560 73.6
SalBow6G2851 Salvia bowleyana HOM05D004765 ORTHO05D005900 1.4e-235 819.7 598 71.4
Aqoxy2G01052 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 1.8e-235 819.3 558 73.1
AT3G44330 Arabidopsis thaliana HOM05D004765 ORTHO05D005900 5.3e-235 817.8 554 74.2
AL5G22480 Arabidopsis lyrata HOM05D004765 ORTHO05D005900 5.8e-234 814.3 554 73.8
Oeu051604.1 Olea europaea HOM05D004765 ORTHO05D005900 2.9e-233 812.0 564 74.6
SGA_v2.0_scaffold177G39433 Striga asiatica HOM05D004765 ORTHO05D005900 8.4e-233 810.4 568 72.5
BcaB01g01169 Brassica carinata HOM05D004765 ORTHO05D005900 1.1e-232 810.1 553 72.9
A06p26850 Brassica napus HOM05D004765 ORTHO05D005900 1.9e-232 809.3 561 73.1
BcaC01g02231 Brassica carinata HOM05D004765 ORTHO05D005900 2.5e-232 808.9 563 72.6
Aqoxy4G02718 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 5.5e-232 807.7 599 69.3
BraA06t25294Z Brassica rapa HOM05D004765 ORTHO05D005900 9.3e-232 807.0 551 73.3
A06p22050 Brassica napus HOM05D004765 ORTHO05D005900 6.0e-231 804.3 554 72.7
C03p69330 Brassica napus HOM05D004765 ORTHO05D005900 1.0e-230 803.5 550 73.5
BolC3t19191H Brassica oleracea HOM05D004765 ORTHO05D005900 1.0e-230 803.5 550 73.5
BcaC01g02031 Brassica carinata HOM05D004765 ORTHO05D005900 6.7e-230 800.8 550 73.1
AUR62020257 Chenopodium quinoa HOM05D004765 ORTHO05D005900 6.7e-230 800.8 538 74.9
BcaB02g10755 Brassica carinata HOM05D004765 ORTHO05D005900 7.4e-229 797.3 567 71.6
Psat7g187280 Pisum sativum HOM05D004765 ORTHO05D005900 3.7e-228 795.0 523 76.3
SGA_v2.0_scaffold295G47508 Striga asiatica HOM05D004765 ORTHO05D005900 4.8e-228 794.7 569 70.5
CDE08G1681 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 5.3e-227 791.2 537 72.4
EL10Ac7g16329 Beta vulgaris HOM05D004765 ORTHO05D005900 6.5e-225 784.3 629 65.2
Aa31LG4G13830 Aethionema arabicum HOM05D004765 ORTHO05D005900 5.5e-224 781.2 533 73.5
Duzib168G0312 Durio zibethinus HOM05D004765 ORTHO05D005900 1.0e-222 776.9 563 71.6
Lj1A257T30 Lonicera japonica HOM05D004765 ORTHO05D005900 1.1e-221 773.5 452 86.5
Os08g0102100 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D005900 7.4e-221 770.8 553 68.5
HPP92_006357 Vanilla planifolia HOM05D004765 ORTHO05D005900 9.7e-221 770.4 553 70.2
Zm00001eb259900 Zea mays HOM05D004765 ORTHO05D005900 2.2e-212 742.7 554 66.4
FvH4_3g25670 Fragaria vesca HOM05D004765 ORTHO05D005900 4.8e-212 741.5 480 76.5
unitig_0.g1473 Utricularia gibba HOM05D004765 ORTHO05D005900 1.4e-211 740.0 577 65.7
Migut.D02363 Erythranthe guttata HOM05D004765 ORTHO05D005900 2.9e-209 732.3 484 75.4
Sc12g0004660 Simmondsia chinensis HOM05D004765 ORTHO05D005900 2.2e-201 706.1 474 74.3
CDE02G4012 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 6.7e-198 694.5 558 64.3
Mapoly0185s0020 Marchantia polymorpha HOM05D004765 ORTHO05D005900 1.4e-195 686.8 560 61.4
Zm00001eb198750 Zea mays HOM05D004765 ORTHO05D005900 4.1e-195 685.3 505 65.5
Pp3c12_11630 Physcomitrium patens HOM05D004765 ORTHO05D005900 1.3e-185 653.7 548 60.6
SMO141G0161 Selaginella moellendorffii HOM05D004765 ORTHO05D005900 1.5e-181 640.2 559 59.0
AUR62001526 Chenopodium quinoa HOM05D004765 ORTHO05D005900 1.6e-178 630.2 418 74.9
TAR633G2468 Trochodendron aralioides HOM05D004765 ORTHO05D005900 1.8e-171 606.7 365 82.7
Oeu014468.1 Olea europaea HOM05D004765 ORTHO05D005900 8.0e-167 591.3 359 83.3
BraA06t25618Z Brassica rapa HOM05D004765 ORTHO05D005900 1.2e-162 577.4 400 71.8
C03p67600 Brassica napus HOM05D004765 ORTHO05D005900 1.3e-161 573.9 402 70.9
BolSC21t60262H Brassica oleracea HOM05D004765 ORTHO05D005900 1.5e-160 570.5 402 70.6
CBR_g17963 Chara braunii HOM05D004765 ORTHO05D005900 3.0e-145 519.6 562 49.8
Sopen01g004890 Solanum pennellii HOM05D004765 ORTHO05D005900 1.2e-133 481.1 327 74.0
AagrBONN_evm.TU.Sc2ySwM_368.2350 Anthoceros agrestis HOM05D004765 ORTHO05D005900 4.9e-132 475.7 534 46.1
VMungo1127G1239 Vigna mungo HOM05D004765 ORTHO05D005900 3.1e-126 456.4 269 83.6
CAN.G226.4 Capsicum annuum HOM05D004765 ORTHO05D005900 6.0e-122 442.2 336 67.9
SEGI_38882 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 7.7e-101 372.1 220 80.0
CAN.G30.1 Capsicum annuum HOM05D004765 ORTHO05D005900 3.5e-85 320.1 195 76.9
Migut.D02428 Erythranthe guttata HOM05D004765 ORTHO05D005900 2.1e-82 310.8 200 81.0
Psat4g157520 Pisum sativum HOM05D004765 ORTHO05D005900 6.1e-66 256.1 195 68.7
SEGI_20304 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 6.4e-55 219.5 139 79.1
CAN.G198.33 Capsicum annuum HOM05D004765 ORTHO05D005900 1.6e-50 204.9 152 65.8
CAN.G1211.3 Capsicum annuum HOM05D004765 ORTHO05D005900 1.8e-49 201.4 147 68.0
CAN.G79.6 Capsicum annuum HOM05D004765 ORTHO05D005900 3.5e-45 187.2 189 56.1
CAN.G79.7 Capsicum annuum HOM05D004765 ORTHO05D005900 1.5e-43 181.8 117 74.4
TAR633G0557 Trochodendron aralioides HOM05D004765 ORTHO05D005900 7.1e-30 136.3 82 87.8
Lj1C257T9 Lonicera japonica HOM05D004765 ORTHO05D030006 1.7e-28 131.7 116 62.1
VMungo0251G2550 Vigna mungo HOM05D000107 ORTHO05D000001 4.4e-24 117.1 115 53.9
Sc12g0004650 Simmondsia chinensis HOM05D004765 ORTHO05D030006 3.8e-23 114.0 78 71.8
SEGI_19690 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 4.2e-22 110.5 84 61.9
SEGI_24377 Sequoiadendron giganteum HOM05D004765 ORTHO05D030006 2.1e-21 108.2 86 59.3
QL04p027443 Quercus lobata HOM05D004765 ORTHO05D030006 5.6e-19 100.1 78 65.4
Os12g0509400 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D296799 1.5e-08 65.5 55 56.4
Pp3c10_16910 Physcomitrium patens HOM05D004765 ORTHO05D315325 7.6e-08 63.2 112 35.7
Zm00001eb190390 Zea mays HOM05D002544 ORTHO05D007856 6.4e-07 60.1 352 23.3


User provided reference genes

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