Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015944 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D004044 1.6e-149 532.7 271 100.0
CSS0007474 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D004044 1.2e-141 506.5 261 98.9
CSS0022708 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D004044 8.7e-111 404.1 261 79.3
Actinidia29292 Actinidia chinensis HOM05D000001 ORTHO05D004044 9.0e-108 394.0 261 77.4
vmacro00208 Vaccinium macrocarpon HOM05D000001 ORTHO05D004044 8.2e-101 370.9 261 72.8
Dinv40932 Davidia involucrata HOM05D000001 ORTHO05D004044 1.4e-100 370.2 266 72.9
Rhsim11G0001100 Rhododendron simsii HOM05D000001 ORTHO05D004044 6.5e-98 361.3 261 72.4
Actinidia16899 Actinidia chinensis HOM05D000001 ORTHO05D004044 1.9e-97 359.8 264 73.1
Actinidia39673 Actinidia chinensis HOM05D000001 ORTHO05D004044 9.7e-94 347.4 262 71.8
Actinidia29353 Actinidia chinensis HOM05D000001 ORTHO05D004044 1.7e-93 346.7 264 72.0
Hma1.2p1_0664F.1_g198920 Hydrangea macrophylla HOM05D000001 ORTHO05D004044 1.0e-90 337.4 266 67.3
Ciclev10007851m.g Citrus clementina HOM05D000001 ORTHO05D004044 1.1e-86 323.9 265 64.2
Potri.018G047700 Populus trichocarpa HOM05D000001 ORTHO05D004044 5.7e-86 321.6 269 65.1
Cc08_g00980 Coffea canephora HOM05D000001 ORTHO05D004044 1.4e-84 317.0 265 62.6
Atru.chr7.1828 Acer truncatum HOM05D000001 ORTHO05D004044 1.8e-84 316.6 266 65.0
Solyc08g061320.3 Solanum lycopersicum HOM05D000001 ORTHO05D004044 4.1e-84 315.5 265 66.4
COL.COLO4_21160 Corchorus olitorius HOM05D000001 ORTHO05D004044 5.3e-84 315.1 269 62.8
Manes.16G087000 Manihot esculenta HOM05D000001 ORTHO05D004044 7.0e-84 314.7 269 63.2
Sabra06G0168800 Salix brachista HOM05D000001 ORTHO05D004044 7.0e-84 314.7 269 64.7
PGSC0003DMG400012991 Solanum tuberosum HOM05D000001 ORTHO05D004044 7.0e-84 314.7 265 66.0
Sopen08g016700 Solanum pennellii HOM05D000001 ORTHO05D004044 9.1e-84 314.3 265 66.4
TAR667G0003 Trochodendron aralioides HOM05D000001 ORTHO05D004044 2.6e-83 312.8 264 62.1
CAN.G117.2 Capsicum annuum HOM05D000001 ORTHO05D004044 5.9e-83 311.6 265 66.8
QL02p017294 Quercus lobata HOM05D000001 ORTHO05D004044 1.7e-82 310.1 266 62.8
Haze_18323 Corylus avellana HOM05D000001 ORTHO05D004044 2.2e-82 309.7 265 62.6
Prupe.1G402100 Prunus persica HOM05D000001 ORTHO05D004044 2.2e-82 309.7 266 60.9
Potri.006G218900 Populus trichocarpa HOM05D000001 ORTHO05D004044 3.8e-82 308.9 269 63.9
Peaxi162Scf00327g00026 Petunia axillaris HOM05D000001 ORTHO05D004044 4.2e-81 305.4 265 63.0
MD15G1047700 Malus domestica HOM05D000001 ORTHO05D004044 2.1e-80 303.1 267 61.4
MD08G1046100 Malus domestica HOM05D000001 ORTHO05D004044 3.6e-80 302.4 267 61.0
Oeu003966.1 Olea europaea HOM05D000001 ORTHO05D004044 3.6e-80 302.4 265 61.1
TAR624G0865 Trochodendron aralioides HOM05D000001 ORTHO05D004044 4.7e-80 302.0 255 62.7
Sabra18G0045700 Salix brachista HOM05D000001 ORTHO05D004044 6.1e-80 301.6 268 62.3
Nitab4.5_0004440g0030 Nicotiana tabacum HOM05D000001 ORTHO05D004044 8.0e-80 301.2 265 62.6
ECA236G1474 Erigeron canadensis HOM05D000001 ORTHO05D004044 1.4e-79 300.4 265 61.1
FAN20G1082 Fragaria x ananassa HOM05D000001 ORTHO05D004044 5.2e-79 298.5 267 59.9
Nitab4.5_0009247g0020 Nicotiana tabacum HOM05D000001 ORTHO05D004044 8.8e-79 297.7 265 62.3
FvH4_2g30791 Fragaria vesca HOM05D000001 ORTHO05D004044 3.3e-78 295.8 267 59.2
FAN15G1549 Fragaria x ananassa HOM05D000001 ORTHO05D004044 3.3e-78 295.8 267 59.2
FAN27G1566 Fragaria x ananassa HOM05D000001 ORTHO05D004044 3.3e-78 295.8 267 59.2
Nn8g38610 Nelumbo nucifera HOM05D000001 ORTHO05D004044 7.4e-78 294.7 264 59.5
FAN24G2651 Fragaria x ananassa HOM05D000001 ORTHO05D004044 6.3e-77 291.6 267 58.4
TWI63G1385 Tripterygium wilfordii HOM05D000001 ORTHO05D000003 1.1e-76 290.8 269 59.5
CiPaw.16G067100 Carya illinoinensis HOM05D000001 ORTHO05D004044 3.1e-76 289.3 270 60.0
PGR142G0487 Punica granatum HOM05D000001 ORTHO05D004044 9.1e-76 287.7 266 59.8
TWI32G1352 Tripterygium wilfordii HOM05D000001 ORTHO05D004044 9.1e-76 287.7 266 58.3
TPR.G38869 Trifolium pratense HOM05D000001 ORTHO05D004044 1.6e-75 287.0 266 57.9
RcHm_v2.0_Chr6g0312051 Rosa chinensis HOM05D000001 ORTHO05D004044 2.6e-75 286.2 267 57.7
VMungo1309G1461 Vigna mungo HOM05D000001 ORTHO05D004044 3.5e-75 285.8 265 58.5
Gohir.A13G188300 Gossypium hirsutum HOM05D000001 ORTHO05D004044 7.7e-75 284.6 269 59.5
Gorai.013G221300 Gossypium raimondii HOM05D000001 ORTHO05D004044 7.7e-75 284.6 269 59.5
TWI34G0443 Tripterygium wilfordii HOM05D000001 ORTHO05D004044 1.0e-74 284.3 271 58.3
CsaV3_4G036160 Cucumis sativus L. HOM05D000001 ORTHO05D004044 1.3e-74 283.9 267 57.7
TAR626G1342 Trochodendron aralioides HOM05D000001 ORTHO05D004044 1.7e-74 283.5 265 58.9
arahy.Tifrunner.gnm1.ann1.EC7DMA Arachis hypogaea HOM05D000001 ORTHO05D004044 2.2e-74 283.1 266 58.3
MELO3C016924.2 Cucumis melo HOM05D000001 ORTHO05D004044 2.9e-74 282.7 267 57.3
Glyma.04G057200 Glycine max HOM05D000001 ORTHO05D004044 5.0e-74 282.0 265 58.1
Gohir.D13G195200 Gossypium hirsutum HOM05D000001 ORTHO05D004044 5.0e-74 282.0 269 59.5
Gorai.009G039900 Gossypium raimondii HOM05D000001 ORTHO05D004044 5.0e-74 282.0 267 58.1
arahy.Tifrunner.gnm1.ann1.1E00SW Arachis hypogaea HOM05D000001 ORTHO05D004044 6.5e-74 281.6 266 57.9
CiPaw.15G090000 Carya illinoinensis HOM05D000001 ORTHO05D004044 8.5e-74 281.2 266 58.6
DCAR_004372 Daucus carota HOM05D000001 ORTHO05D004044 1.1e-73 280.8 261 58.2
Gohir.D05G039400 Gossypium hirsutum HOM05D000001 ORTHO05D004044 1.5e-73 280.4 267 57.7
Glyma.06G057700 Glycine max HOM05D000001 ORTHO05D004044 1.9e-73 280.0 267 58.8
Gohir.A05G037900 Gossypium hirsutum HOM05D000001 ORTHO05D004044 4.2e-73 278.9 267 57.3
ClCG05G015870 Citrullus lanatus HOM05D000001 ORTHO05D004044 1.2e-72 277.3 267 56.2
Phvul.009G083600 Phaseolus vulgaris HOM05D000001 ORTHO05D004044 1.6e-72 276.9 265 57.4
THA.LOC104819898 Tarenaya hassleriana HOM05D000001 ORTHO05D004044 4.7e-72 275.4 268 56.0
Glyma.17G219600 Glycine max HOM05D000001 ORTHO05D004044 6.1e-72 275.0 266 57.5
Aqoxy7G04098 Aquilegia oxysepala HOM05D000001 ORTHO05D004044 1.0e-71 274.2 265 55.1
Glyma.14G106500 Glycine max HOM05D000001 ORTHO05D004044 1.8e-71 273.5 266 56.0
MSTRG.25995 Avicennia marina HOM05D000001 ORTHO05D004044 2.3e-71 273.1 266 57.1
ECA240G1094 Erigeron canadensis HOM05D000001 ORTHO05D004044 2.3e-71 273.1 265 58.1
Medtr1g014880 Medicago truncatula HOM05D000001 ORTHO05D004044 4.0e-71 272.3 291 52.2
Lj7C209T10 Lonicera japonica HOM05D000001 ORTHO05D004044 1.5e-70 270.4 267 58.4
SalBow1G0904 Salvia bowleyana HOM05D000001 ORTHO05D004044 1.5e-70 270.4 265 56.6
Psat6g024040 Pisum sativum HOM05D000001 ORTHO05D004044 4.4e-70 268.9 267 57.7
Ca_13092_v3 Cicer arietinum L. HOM05D000001 ORTHO05D004044 5.7e-70 268.5 267 57.7
arahy.Tifrunner.gnm1.ann1.WRM076 Arachis hypogaea HOM05D000001 ORTHO05D004044 1.3e-69 267.3 266 56.0
Phvul.001G044600 Phaseolus vulgaris HOM05D000001 ORTHO05D004044 1.3e-69 267.3 266 55.6
Nn6g35692 Nelumbo nucifera HOM05D000001 ORTHO05D004044 1.7e-69 266.9 264 56.1
arahy.Tifrunner.gnm1.ann1.8BKD36 Arachis hypogaea HOM05D000001 ORTHO05D004044 4.8e-69 265.4 266 55.6
Lj1g0000975 Lotus japonicus HOM05D000001 ORTHO05D004044 6.3e-69 265.0 265 57.0
Sed0004805 Sechium edule HOM05D000001 ORTHO05D004044 6.3e-69 265.0 267 56.2
Aa31LG5G9520 Aethionema arabicum HOM05D000001 ORTHO05D004044 8.2e-69 264.6 268 54.1
Manes.03G056801 Manihot esculenta HOM05D000001 ORTHO05D004044 8.2e-69 264.6 272 55.9
Eucgr.C00743 Eucalyptus grandis HOM05D000001 ORTHO05D004044 2.4e-68 263.1 266 53.0
Lj5g0004443 Lotus japonicus HOM05D000001 ORTHO05D004044 2.4e-68 263.1 268 55.2
Sp4g06560 Schrenkiella parvula HOM05D000001 ORTHO05D004044 9.1e-68 261.2 271 53.9
Thecc.09G065500 Theobroma cacao HOM05D000001 ORTHO05D004044 1.6e-67 260.4 269 56.5
VMungo0647G0604 Vigna mungo HOM05D000001 ORTHO05D004044 2.0e-67 260.0 266 55.6
DCAR_003727 Daucus carota HOM05D000001 ORTHO05D004044 2.7e-67 259.6 266 53.4
Sed0025024 Sechium edule HOM05D000001 ORTHO05D004044 1.0e-66 257.7 269 53.9
Lalb_Chr11g0063391 Lupinus albus HOM05D000001 ORTHO05D004044 1.7e-66 256.9 265 54.0
HanXRQChr05g0136451 Helianthus annuus HOM05D000001 ORTHO05D004044 3.8e-66 255.8 266 53.8
Duzib168G1373 Durio zibethinus HOM05D000001 ORTHO05D004044 6.5e-66 255.0 269 55.0
CANSAT25G0247 Cannabis sativa HOM05D000001 ORTHO05D004044 1.1e-65 254.2 265 55.8
Carub.0004s0615 Capsella rubella HOM05D000001 ORTHO05D004044 1.1e-65 254.2 267 53.9
Duzib187G1939 Durio zibethinus HOM05D000001 ORTHO05D004044 1.1e-65 254.2 267 53.9
PSO724G0994 Papaver somniferum HOM05D000001 ORTHO05D004044 5.5e-65 251.9 264 56.4
Dinv41848 Davidia involucrata HOM05D000001 ORTHO05D004044 7.2e-65 251.5 261 54.8
PSO135G0765 Papaver somniferum HOM05D000001 ORTHO05D004044 9.4e-65 251.1 264 56.4
Lalb_Chr22g0349641 Lupinus albus HOM05D000001 ORTHO05D004044 4.7e-64 248.8 266 54.5
Lsat_1_v5_gn_8_70460 Lactuca sativa HOM05D000001 ORTHO05D004044 6.1e-64 248.4 265 56.6
EL10Ac2g02405 Beta vulgaris HOM05D000001 ORTHO05D004044 8.8e-63 244.6 265 51.3
MBI19_g47982_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D004044 8.8e-63 244.6 266 54.1
Migut.E01787 Erythranthe guttata HOM05D000001 ORTHO05D004044 1.2e-62 244.2 262 53.1
Gohir.A08G247200 Gossypium hirsutum HOM05D000001 ORTHO05D004044 3.4e-62 242.7 271 51.7
AL4G18860 Arabidopsis lyrata HOM05D000001 ORTHO05D004044 4.4e-62 242.3 265 52.1
AT2G26280 Arabidopsis thaliana HOM05D000001 ORTHO05D004044 5.7e-62 241.9 265 53.2
Thhalv10001942m.g Eutrema salsugineum HOM05D000001 ORTHO05D004044 5.7e-62 241.9 278 51.4
Actinidia01324 Actinidia chinensis HOM05D000001 ORTHO05D004044 1.7e-61 240.4 152 80.3
Hund25544 Selenicereus undatus HOM05D000001 ORTHO05D004044 3.7e-61 239.2 266 51.1
GSVIVG01035490001 Vitis vinifera HOM05D000001 ORTHO05D004044 4.8e-61 238.8 265 55.1
SGA_v2.0_scaffold169G38720 Striga asiatica HOM05D000001 ORTHO05D004044 2.4e-60 236.5 266 53.8
HanXRQChr03g0067161 Helianthus annuus HOM05D000001 ORTHO05D004044 4.1e-60 235.7 267 55.1
Gorai.004G286100 Gossypium raimondii HOM05D000001 ORTHO05D004044 5.4e-60 235.3 271 50.9
AUR62037726 Chenopodium quinoa HOM05D000001 ORTHO05D004044 9.1e-60 234.6 269 48.0
Gohir.D08G268400 Gossypium hirsutum HOM05D000001 ORTHO05D004044 2.0e-59 233.4 271 50.6
Sc06g0000110 Simmondsia chinensis HOM05D000001 ORTHO05D004044 1.2e-56 224.2 265 48.7
THA.LOC104804451 Tarenaya hassleriana HOM05D000001 ORTHO05D004044 1.2e-56 224.2 261 53.3
Lalb_Chr24g0393701 Lupinus albus HOM05D000001 ORTHO05D004044 3.6e-56 222.6 267 51.7
unitig_32.g10913 Utricularia gibba HOM05D000001 ORTHO05D004044 3.0e-55 219.5 266 51.5
AUR62020279 Chenopodium quinoa HOM05D000001 ORTHO05D004044 2.0e-54 216.9 268 46.3
BcaB08g35273 Brassica carinata HOM05D000001 ORTHO05D004044 2.6e-54 216.5 263 47.9
Lsat_1_v5_gn_8_149721 Lactuca sativa HOM05D000001 ORTHO05D004044 7.5e-54 214.9 270 52.6
SGA_v2.0_scaffold163G37994 Striga asiatica HOM05D000001 ORTHO05D004044 4.9e-53 212.2 261 53.3
HanXRQChr09g0248701 Helianthus annuus HOM05D000001 ORTHO05D004044 2.7e-51 206.5 266 49.2
MBI19_g09929_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D004044 4.5e-51 205.7 243 51.0
Lalb_Chr14g0375461 Lupinus albus HOM05D000001 ORTHO05D004044 3.8e-50 202.6 263 50.6
Duzib150G1238 Durio zibethinus HOM05D000001 ORTHO05D004044 9.5e-49 198.0 265 45.7
unitig_748.g8235 Utricularia gibba HOM05D000001 ORTHO05D004044 6.8e-47 191.8 265 45.3
unitig_4.g30334 Utricularia gibba HOM05D000001 ORTHO05D004044 2.0e-46 190.3 265 44.9
CDE05G2793 Ceratophyllum demersum HOM05D000001 ORTHO05D004044 9.8e-46 188.0 265 43.0
CDE05G0380 Ceratophyllum demersum HOM05D000001 ORTHO05D004044 4.1e-44 182.6 262 44.7
BraA09t40935Z Brassica rapa HOM05D000001 ORTHO05D004044 4.6e-43 179.1 269 45.7
A09p55320 Brassica napus HOM05D000001 ORTHO05D004044 7.8e-43 178.3 269 45.4
BolC8t51400H Brassica oleracea HOM05D000001 ORTHO05D004044 7.8e-43 178.3 270 46.7
SalBow4G2835 Salvia bowleyana HOM05D000001 ORTHO05D004044 1.0e-42 177.9 240 47.5
Migut.A00058 Erythranthe guttata HOM05D000001 ORTHO05D004044 1.7e-42 177.2 253 44.3
TAR636G0641 Trochodendron aralioides HOM05D000001 ORTHO05D004044 2.3e-42 176.8 150 60.0
BcaC07g40830 Brassica carinata HOM05D000001 ORTHO05D004044 3.9e-42 176.0 274 45.3
C08p38250 Brassica napus HOM05D000001 ORTHO05D004044 3.9e-42 176.0 271 46.9
HPP92_016599 Vanilla planifolia HOM05D000001 ORTHO05D004044 6.6e-42 175.3 265 43.0
CARHR115120 Cardamine hirsuta HOM05D000001 ORTHO05D004044 7.0e-36 155.2 163 50.9
Os06g0199200 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D004044 2.1e-35 153.7 269 41.6
HPP92_011061 Vanilla planifolia HOM05D000001 ORTHO05D004044 2.1e-32 143.7 265 35.8
Oeu060162.1 Olea europaea HOM05D000001 ORTHO05D004044 3.2e-28 129.8 167 45.5
Zm00001eb278590 Zea mays HOM05D000001 ORTHO05D004044 4.1e-28 129.4 277 37.9
Os02g0780550 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D004044 2.7e-27 126.7 273 38.1
SGA_v2.0_scaffold20G09145 Striga asiatica HOM05D000001 ORTHO05D004044 3.5e-27 126.3 263 36.9
SEGI_25644 Sequoiadendron giganteum HOM05D000001 ORTHO05D004044 7.8e-27 125.2 263 37.6
Psat0s3154g0080 Pisum sativum HOM05D000001 ORTHO05D004044 7.3e-25 118.6 131 48.1
Psat0s3154g0240 Pisum sativum HOM05D000001 ORTHO05D004044 7.3e-25 118.6 125 52.0
Psat0s3775g0160 Pisum sativum HOM05D000001 ORTHO05D004044 7.3e-25 118.6 125 52.0
ATR0598G100 Amborella trichopoda HOM05D000001 ORTHO05D004044 2.1e-24 117.1 269 34.6
BcaB06g28092 Brassica carinata HOM05D000001 ORTHO05D004044 6.8e-23 112.1 252 34.5
Zm00001eb005950 Zea mays HOM05D000001 ORTHO05D004044 6.8e-23 112.1 209 35.4
A04p20320 Brassica napus HOM05D000001 ORTHO05D004044 2.9e-21 106.7 246 33.3
BcaC02g08289 Brassica carinata HOM05D000001 ORTHO05D004044 4.9e-21 105.9 246 35.0
C04p56020 Brassica napus HOM05D000001 ORTHO05D004044 8.4e-21 105.1 246 34.6
BolC4t27135H Brassica oleracea HOM05D000001 ORTHO05D004044 8.4e-21 105.1 246 34.6
BraA04t17611Z Brassica rapa HOM05D000001 ORTHO05D004044 1.1e-20 104.8 246 32.9
Os03g0180300 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D004044 1.2e-19 101.3 260 29.2
Pp3c4_25250 Physcomitrium patens HOM05D000001 ORTHO05D004044 7.8e-19 98.6 273 32.2
SHI28008 Sapria himalayana HOM05D000001 ORTHO05D004044 6.6e-18 95.5 264 35.6
Pp3c26_4880 Physcomitrium patens HOM05D000001 ORTHO05D004044 2.1e-16 90.5 259 30.1
Oeu024206.1 Olea europaea HOM05D000001 ORTHO05D004044 4.7e-16 89.4 144 41.7
SMO356G0739 Selaginella moellendorffii HOM05D000001 ORTHO05D004044 3.4e-14 83.2 250 29.2
DCAR_001243 Daucus carota HOM05D000399 ORTHO05D000304 3.0e-10 70.1 78 47.4
Zm00001eb373910 Zea mays HOM05D000001 ORTHO05D004044 7.3e-09 65.5 140 35.0


User provided reference genes

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