Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015893 Camellia sinensis var. sinensis HOM05D006146 ORTHO05D007924 8.0e-219 763.5 383 100.0
CSS0011042 Camellia sinensis var. sinensis HOM05D006146 ORTHO05D007924 2.4e-199 698.7 383 93.7
CSS0000590 Camellia sinensis var. sinensis HOM05D006146 ORTHO05D007924 4.2e-175 618.2 497 69.2
CSS0012094 Camellia sinensis var. sinensis HOM05D006146 ORTHO05D007924 4.2e-175 618.2 497 69.2
CSS0039643 Camellia sinensis var. sinensis HOM05D006146 ORTHO05D007924 1.9e-143 513.1 424 68.6
vmacro20300 Vaccinium macrocarpon HOM05D006146 ORTHO05D007924 1.0e-141 507.3 506 57.1
Dinv16910 Davidia involucrata HOM05D006146 ORTHO05D007924 4.5e-137 491.9 503 57.1
Cfa017174 Carpinus fangiana HOM05D006146 ORTHO05D007924 1.9e-127 459.9 506 52.6
Cc06_g01080 Coffea canephora HOM05D006146 ORTHO05D007924 9.4e-127 457.6 502 52.6
Dinv13137 Davidia involucrata HOM05D006146 ORTHO05D007924 1.8e-125 453.4 495 53.7
Peaxi162Scf01132g00127 Petunia axillaris HOM05D006146 ORTHO05D007924 3.7e-123 445.7 505 51.9
Lj2C71G10 Lonicera japonica HOM05D003030 ORTHO05D003610 6.3e-123 444.9 507 51.9
COL.COLO4_14502 Corchorus olitorius HOM05D006146 ORTHO05D007924 1.8e-122 443.4 402 59.5
RcHm_v2.0_Chr3g0462541 Rosa chinensis HOM05D006146 ORTHO05D007924 1.3e-120 437.2 503 50.3
CiPaw.09G211700 Carya illinoinensis HOM05D006146 ORTHO05D007924 5.0e-120 435.3 502 51.0
TAR636G3413 Trochodendron aralioides HOM05D006146 ORTHO05D007924 8.5e-120 434.5 502 50.8
Prupe.6G280600 Prunus persica HOM05D006146 ORTHO05D007924 1.9e-119 433.3 506 50.0
Ciclev10011366m.g Citrus clementina HOM05D006146 ORTHO05D007924 5.5e-119 431.8 501 50.3
TWI53G1621 Tripterygium wilfordii HOM05D006146 ORTHO05D007924 6.1e-118 428.3 513 50.1
MD00G1062300 Malus domestica HOM05D006146 ORTHO05D007924 2.0e-116 423.3 502 48.8
QL07p034872 Quercus lobata HOM05D006146 ORTHO05D007924 2.6e-116 422.9 503 49.5
PGSC0003DMG400006271 Solanum tuberosum HOM05D006146 ORTHO05D007924 9.7e-116 421.0 515 48.3
FAN14G4754 Fragaria x ananassa HOM05D006146 ORTHO05D007924 2.2e-115 419.9 503 48.7
Manes.08G094300 Manihot esculenta HOM05D006146 ORTHO05D007924 2.8e-115 419.5 504 49.4
Haze_21031 Corylus avellana HOM05D006146 ORTHO05D007924 4.8e-115 418.7 505 49.9
ECA236G4528 Erigeron canadensis HOM05D006146 ORTHO05D007924 4.1e-114 415.6 501 49.1
FvH4_6g11110 Fragaria vesca HOM05D006146 ORTHO05D007924 4.1e-114 415.6 503 48.5
FAN02G2047 Fragaria x ananassa HOM05D006146 ORTHO05D007924 4.1e-114 415.6 503 48.5
CANSAT35G1531 Cannabis sativa HOM05D006146 ORTHO05D007924 5.3e-114 415.2 510 48.6
Thecc.05G012100 Theobroma cacao HOM05D006146 ORTHO05D007924 7.0e-114 414.8 513 48.3
Nn2g10908 Nelumbo nucifera HOM05D006146 ORTHO05D007924 9.1e-114 414.5 502 48.2
Rhsim05G0219200 Rhododendron simsii HOM05D006146 ORTHO05D007924 1.2e-113 414.1 272 75.4
MD12G1172300 Malus domestica HOM05D006146 ORTHO05D007924 4.5e-113 412.1 504 48.0
FAN05G4820 Fragaria x ananassa HOM05D006146 ORTHO05D007924 5.9e-113 411.8 502 48.6
Gohir.A09G166500 Gossypium hirsutum HOM05D006146 ORTHO05D007924 1.3e-112 410.6 514 46.9
Gorai.006G183800 Gossypium raimondii HOM05D006146 ORTHO05D007924 1.7e-112 410.2 514 46.7
CAN.G133.15 Capsicum annuum HOM05D006146 ORTHO05D007924 1.1e-111 407.5 504 48.0
Gohir.D09G162100 Gossypium hirsutum HOM05D006146 ORTHO05D007924 1.1e-111 407.5 514 46.3
Oeu042663.2 Olea europaea HOM05D006146 ORTHO05D007924 1.1e-111 407.5 505 48.7
SGA_v2.0_scaffold85G26717 Striga asiatica HOM05D006146 ORTHO05D007924 1.1e-111 407.5 518 46.7
Aqoxy4G02469 Aquilegia oxysepala HOM05D006146 ORTHO05D007924 4.2e-111 405.6 502 47.8
Sopen09g001100 Solanum pennellii HOM05D006146 ORTHO05D007924 2.1e-110 403.3 505 47.5
Solyc09g005120.3 Solanum lycopersicum HOM05D006146 ORTHO05D007924 1.0e-109 401.0 505 47.3
MBI03_g05510_MAGBIO Magnolia biondii HOM05D006146 ORTHO05D007924 1.2e-108 397.5 503 47.7
Atru.chr8.2278 Acer truncatum HOM05D006146 ORTHO05D007924 4.8e-107 392.1 502 47.6
Hma1.2p1_0362F.1_g136590 Hydrangea macrophylla HOM05D006146 ORTHO05D007924 2.4e-106 389.8 270 74.8
PSO384G0066 Papaver somniferum HOM05D006146 ORTHO05D007924 3.1e-106 389.4 505 47.7
MSTRG.5562 Avicennia marina HOM05D006146 ORTHO05D007924 1.2e-105 387.5 505 46.3
Hund14889 Selenicereus undatus HOM05D006146 ORTHO05D007924 2.7e-105 386.3 509 46.0
Glyma.18G204000 Glycine max HOM05D006146 ORTHO05D007924 7.7e-105 384.8 500 47.0
Gorai.012G116800 Gossypium raimondii HOM05D006146 ORTHO05D007924 1.3e-104 384.0 508 45.3
Sed0026013 Sechium edule HOM05D006146 ORTHO05D007924 2.9e-104 382.9 502 45.0
Lj1g0005300 Lotus japonicus HOM05D006146 ORTHO05D007924 3.8e-104 382.5 503 46.5
Eucgr.A00545 Eucalyptus grandis HOM05D006146 ORTHO05D007924 5.0e-104 382.1 464 50.2
PSO339G2519 Papaver somniferum HOM05D006146 ORTHO05D007924 6.5e-104 381.7 505 46.7
Gohir.A04G093600 Gossypium hirsutum HOM05D006146 ORTHO05D007924 8.5e-104 381.3 508 45.9
Hma1.2p1_0362F.1_g136580 Hydrangea macrophylla HOM05D006146 ORTHO05D007924 1.5e-103 380.6 283 71.4
ClCG10G022330 Citrullus lanatus HOM05D006146 ORTHO05D007924 2.5e-103 379.8 502 45.2
Lsat_1_v5_gn_8_100801 Lactuca sativa HOM05D006146 ORTHO05D007924 5.5e-103 378.6 503 45.1
Psat3g126240 Pisum sativum HOM05D006146 ORTHO05D007924 3.6e-102 375.9 504 46.4
GSVIVG01003939001 Vitis vinifera HOM05D006146 ORTHO05D007924 1.0e-101 374.4 276 67.0
Ah.12g058880 Amaranthus hybridus HOM05D006146 ORTHO05D007924 8.8e-101 371.3 533 42.6
Carub.0003s0810 Capsella rubella HOM05D006146 ORTHO05D007924 1.2e-100 370.9 505 45.0
arahy.Tifrunner.gnm1.ann1.D29HQK Arachis hypogaea HOM05D006146 ORTHO05D007924 4.4e-100 369.0 522 43.9
SalBow5G2678 Salvia bowleyana HOM05D006146 ORTHO05D007924 5.7e-100 368.6 499 44.9
Potri.016G120000 Populus trichocarpa HOM05D006146 ORTHO05D007924 1.3e-99 367.5 271 68.3
Eucgr.A00544 Eucalyptus grandis HOM05D006146 ORTHO05D007924 1.7e-99 367.1 505 44.6
AUR62030469 Chenopodium quinoa HOM05D006146 ORTHO05D007924 2.8e-99 366.3 514 43.6
MELO3C009146.2 Cucumis melo HOM05D006146 ORTHO05D007924 2.8e-99 366.3 500 44.2
arahy.Tifrunner.gnm1.ann1.S46L09 Arachis hypogaea HOM05D006146 ORTHO05D007924 8.3e-99 364.8 521 43.6
CsaV3_3G033560 Cucumis sativus L. HOM05D006146 ORTHO05D007924 1.1e-98 364.4 498 45.4
THA.LOC104816204 Tarenaya hassleriana HOM05D006146 ORTHO05D007924 1.1e-98 364.4 503 43.3
HanXRQChr12g0383181 Helianthus annuus HOM05D006146 ORTHO05D007924 4.1e-98 362.5 511 43.6
Nitab4.5_0003654g0010 Nicotiana tabacum HOM05D006146 ORTHO05D007924 1.6e-97 360.5 272 65.8
CSS0031746 Camellia sinensis var. sinensis HOM05D006146 ORTHO05D007924 2.0e-97 360.1 432 54.9
Migut.J00133 Erythranthe guttata HOM05D006146 ORTHO05D007924 2.0e-97 360.1 505 45.5
Medtr7g069480 Medicago truncatula HOM05D006146 ORTHO05D007924 2.7e-97 359.8 495 45.7
Nitab4.5_0000195g0240 Nicotiana tabacum HOM05D006146 ORTHO05D007924 2.7e-97 359.8 486 46.1
EL10Ac5g12530 Beta vulgaris HOM05D006146 ORTHO05D007924 3.5e-97 359.4 504 42.7
Glyma.07G152900 Glycine max HOM05D006146 ORTHO05D007924 1.3e-96 357.5 503 44.7
AT3G08970 Arabidopsis thaliana HOM05D006146 ORTHO05D007924 2.9e-96 356.3 504 44.2
AL3G19990 Arabidopsis lyrata HOM05D006146 ORTHO05D007924 3.3e-95 352.8 504 42.3
AUR62010446 Chenopodium quinoa HOM05D006146 ORTHO05D007924 3.3e-95 352.8 512 42.6
Thhalv10020374m.g Eutrema salsugineum HOM05D006146 ORTHO05D007924 7.3e-95 351.7 507 42.4
VMungo1383G3422 Vigna mungo HOM05D006146 ORTHO05D007924 4.7e-94 349.0 516 44.2
Sc22g0002570 Simmondsia chinensis HOM05D006146 ORTHO05D007924 1.5e-92 344.0 272 63.6
CARHR083310 Cardamine hirsuta HOM05D006146 ORTHO05D007924 7.5e-92 341.7 498 43.4
Actinidia11568 Actinidia chinensis HOM05D006146 ORTHO05D007924 2.9e-91 339.7 466 46.8
PGR031G2778 Punica granatum HOM05D006146 ORTHO05D007924 6.4e-91 338.6 522 41.6
Lalb_Chr03g0043371 Lupinus albus HOM05D006146 ORTHO05D007924 1.8e-90 337.0 511 42.7
TPR.G35447 Trifolium pratense HOM05D006146 ORTHO05D007924 9.2e-90 334.7 492 44.9
unitig_578.g15902 Utricularia gibba HOM05D003030 ORTHO05D003610 9.2e-90 334.7 502 42.4
Phvul.008G095600 Phaseolus vulgaris HOM05D006146 ORTHO05D007924 2.0e-89 333.6 272 64.0
HPP92_025101 Vanilla planifolia HOM05D006146 ORTHO05D007924 1.0e-88 331.3 498 40.4
Ca_07664_v3 Cicer arietinum L. HOM05D006146 ORTHO05D007924 1.3e-88 330.9 472 44.1
Zm00001eb396940 Zea mays HOM05D006146 ORTHO05D007924 3.3e-87 326.2 511 40.7
Aa31LG5G18940 Aethionema arabicum HOM05D006146 ORTHO05D007924 7.3e-87 325.1 493 41.2
Sp3g07390 Schrenkiella parvula HOM05D006146 ORTHO05D007924 9.5e-87 324.7 508 40.7
C05p58910 Brassica napus HOM05D006146 ORTHO05D007924 1.2e-86 324.3 273 59.0
BolC5t34544H Brassica oleracea HOM05D006146 ORTHO05D007924 2.8e-86 323.2 273 58.6
CDE06G0106 Ceratophyllum demersum HOM05D003030 ORTHO05D003610 3.6e-86 322.8 506 40.3
A05p39870 Brassica napus HOM05D006146 ORTHO05D007924 8.0e-86 321.6 273 58.6
CSS0030843 Camellia sinensis var. sinensis HOM05D006146 ORTHO05D007924 8.9e-85 318.2 348 55.7
Gohir.D04G132900 Gossypium hirsutum HOM05D006146 ORTHO05D007924 1.5e-84 317.4 271 60.1
BraA05t22771Z Brassica rapa HOM05D006146 ORTHO05D007924 2.9e-83 313.2 516 39.3
ATR0681G078 Amborella trichopoda HOM05D006146 ORTHO05D007924 2.0e-81 307.0 505 40.6
SHI12853 Sapria himalayana HOM05D006146 ORTHO05D007924 3.0e-80 303.1 503 39.6
Os03g0293000 Oryza sativa ssp. japonica HOM05D006146 ORTHO05D007924 1.8e-77 293.9 500 37.0
BcaC05g29631 Brassica carinata HOM05D006146 ORTHO05D007924 5.8e-76 288.9 450 41.6
Glyma.16G098700 Glycine max HOM05D006146 ORTHO05D007924 8.3e-75 285.0 231 64.5
QL08p015836 Quercus lobata HOM05D006146 ORTHO05D007924 6.0e-73 278.9 271 57.6
FAN09G2516 Fragaria x ananassa HOM05D006146 ORTHO05D007924 2.3e-72 276.9 216 64.4
DCAR_015389 Daucus carota HOM05D006146 ORTHO05D007924 9.5e-71 271.6 431 44.3
Cpa.g.sc120.50 Carica papaya HOM05D006146 ORTHO05D007924 2.4e-66 256.9 214 61.2
Sabra16G0115900 Salix brachista HOM05D006146 ORTHO05D007924 3.0e-64 250.0 490 36.7
Hund10972 Selenicereus undatus HOM05D006146 ORTHO05D007924 1.9e-63 247.3 214 59.8
SEGI_31782 Sequoiadendron giganteum HOM05D006146 ORTHO05D007924 9.3e-58 228.4 306 41.8
AagrBONN_evm.TU.Sc2ySwM_228.96 Anthoceros agrestis HOM05D006146 ORTHO05D007924 2.6e-44 183.7 269 36.8
Mapoly0184s0019 Marchantia polymorpha HOM05D006146 ORTHO05D007924 5.1e-40 169.5 282 37.2
Zm00001eb225170 Zea mays HOM05D006146 ORTHO05D007924 7.1e-34 149.1 162 50.6
Hund10973 Selenicereus undatus HOM05D006146 ORTHO05D007924 3.5e-33 146.7 296 36.1
Pp3c20_14730 Physcomitrium patens HOM05D006146 ORTHO05D007924 5.1e-32 142.9 245 34.3
SMO347G0184 Selaginella moellendorffii HOM05D006146 ORTHO05D007924 2.5e-31 140.6 274 32.8
QL07p034801 Quercus lobata HOM05D006146 ORTHO05D007924 1.5e-28 131.3 300 36.3
Zm00001eb032720 Zea mays HOM05D006146 ORTHO05D007924 6.1e-25 119.4 198 38.9
Rhsim01G0279400 Rhododendron simsii HOM05D000036 ORTHO05D005472 4.1e-21 106.7 76 67.1
Haze_20655 Corylus avellana HOM05D006146 ORTHO05D007924 4.5e-20 103.2 82 67.1
Thecc.05G011800 Theobroma cacao HOM05D006146 ORTHO05D007924 1.1e-18 98.6 79 58.2
Rhsim05G0215400 Rhododendron simsii HOM05D000003 ORTHO05D000004 4.2e-18 96.7 106 50.9
CBR_g38983 Chara braunii HOM05D000019 ORTHO05D000048 1.6e-09 68.2 100 43.0
Rhsim05G0219400 Rhododendron simsii HOM05D006146 ORTHO05D007924 7.9e-09 65.9 58 58.6


User provided reference genes

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