Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015891 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 5.1e-148 527.7 262 100.0
CSS0005966 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 9.6e-131 470.3 280 87.1
CSS0035751 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 1.7e-103 379.8 241 80.9
CSS0049777 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 3.4e-96 355.5 244 75.8
CSS0012376 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 2.0e-88 329.7 300 63.0
CSS0030635 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 5.7e-83 311.6 214 76.6
vmacro05920 Vaccinium macrocarpon HOM05D004846 ORTHO05D005630 5.9e-72 275.0 237 62.9
Rhsim10G0011500 Rhododendron simsii HOM05D004846 ORTHO05D005630 6.5e-71 271.6 211 68.2
Actinidia05946 Actinidia chinensis HOM05D004846 ORTHO05D005630 2.7e-69 266.2 212 66.0
Dinv25698 Davidia involucrata HOM05D004846 ORTHO05D005630 2.0e-67 260.0 212 63.7
GSVIVG01027213001 Vitis vinifera HOM05D004846 ORTHO05D005630 2.7e-64 249.6 212 61.3
Sabra16G0218700 Salix brachista HOM05D004846 ORTHO05D005630 5.9e-64 248.4 247 53.4
Dinv00597 Davidia involucrata HOM05D004846 ORTHO05D005630 5.5e-62 241.9 211 60.7
Atru.chr6.2483 Acer truncatum HOM05D004846 ORTHO05D005630 9.4e-62 241.1 215 57.2
Thecc.04G024900 Theobroma cacao HOM05D004846 ORTHO05D005630 2.1e-61 240.0 212 58.5
Manes.15G092600 Manihot esculenta HOM05D004846 ORTHO05D005630 4.7e-61 238.8 241 54.4
Potri.001G338000 Populus trichocarpa HOM05D004846 ORTHO05D005630 4.7e-61 238.8 247 52.2
CANSAT64G0871 Cannabis sativa HOM05D004846 ORTHO05D005630 3.0e-60 236.1 232 54.7
Duzib187G0011 Durio zibethinus HOM05D004846 ORTHO05D005630 5.2e-60 235.3 241 52.7
Gohir.D10G085400 Gossypium hirsutum HOM05D004846 ORTHO05D005630 8.8e-60 234.6 241 53.1
Hma1.2p1_0279F.1_g112220 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 8.8e-60 234.6 209 60.3
TAR371G0224 Trochodendron aralioides HOM05D004846 ORTHO05D005630 8.8e-60 234.6 210 58.6
Eucgr.J02281 Eucalyptus grandis HOM05D004846 ORTHO05D005630 2.0e-59 233.4 212 58.0
Cpa.g.sc130.45 Carica papaya HOM05D004846 ORTHO05D005630 2.6e-59 233.0 215 58.1
Gorai.011G093300 Gossypium raimondii HOM05D004846 ORTHO05D005630 2.6e-59 233.0 241 52.7
CiPaw.03G050100 Carya illinoinensis HOM05D004846 ORTHO05D005630 7.5e-59 231.5 214 56.5
DCAR_013672 Daucus carota HOM05D004846 ORTHO05D005630 7.5e-59 231.5 210 59.0
Ciclev10014098m.g Citrus clementina HOM05D004846 ORTHO05D005630 9.8e-59 231.1 215 54.9
Haze_14810 Corylus avellana HOM05D004846 ORTHO05D005630 2.2e-58 229.9 209 56.9
COL.COLO4_29272 Corchorus olitorius HOM05D004846 ORTHO05D005630 2.8e-58 229.6 212 57.1
Peaxi162Scf00420g00255 Petunia axillaris HOM05D004846 ORTHO05D005630 2.8e-58 229.6 237 53.6
QL02p072992 Quercus lobata HOM05D004846 ORTHO05D005630 4.8e-58 228.8 209 57.4
Glyma.16G063300 Glycine max HOM05D004846 ORTHO05D005630 6.3e-58 228.4 209 56.0
Lj3C906G17 Lonicera japonica HOM05D004846 ORTHO05D005630 8.3e-58 228.0 210 58.1
Gohir.A10G160700 Gossypium hirsutum HOM05D004846 ORTHO05D005630 1.1e-57 227.6 241 51.0
MD17G1018500 Malus domestica HOM05D004846 ORTHO05D005630 1.1e-57 227.6 238 51.7
Phvul.008G148206 Phaseolus vulgaris HOM05D004846 ORTHO05D005630 1.1e-57 227.6 212 57.5
ECA233G5463 Erigeron canadensis HOM05D004846 ORTHO05D005630 1.4e-57 227.3 212 58.5
Lj1g0007607 Lotus japonicus HOM05D004846 ORTHO05D005630 1.4e-57 227.3 211 57.3
Cfa007283 Carpinus fangiana HOM05D004846 ORTHO05D005630 1.8e-57 226.9 209 56.5
TPR.G9064 Trifolium pratense HOM05D004846 ORTHO05D005630 1.8e-57 226.9 212 56.6
CsaV3_3G046520 Cucumis sativus L. HOM05D004846 ORTHO05D005630 2.4e-57 226.5 203 58.6
Nn7g36106 Nelumbo nucifera HOM05D004846 ORTHO05D005630 2.4e-57 226.5 210 57.1
PGR083G2372 Punica granatum HOM05D004846 ORTHO05D005630 2.4e-57 226.5 212 57.1
Medtr7g037280 Medicago truncatula HOM05D004846 ORTHO05D005630 4.1e-57 225.7 211 56.9
PSO210G2073 Papaver somniferum HOM05D004846 ORTHO05D005630 7.0e-57 224.9 209 55.5
Lsat_1_v5_gn_5_21981 Lactuca sativa HOM05D004846 ORTHO05D005630 9.1e-57 224.6 207 58.0
FvH4_6g52480 Fragaria vesca HOM05D004846 ORTHO05D005630 1.6e-56 223.8 234 52.1
Prupe.3G299200 Prunus persica HOM05D004846 ORTHO05D005630 1.6e-56 223.8 238 52.1
FAN09G4064 Fragaria x ananassa HOM05D004846 ORTHO05D005630 2.0e-56 223.4 234 52.1
CAN.G473.55 Capsicum annuum HOM05D004846 ORTHO05D005630 2.7e-56 223.0 212 56.6
VMungo1127G0826 Vigna mungo HOM05D004846 ORTHO05D005630 2.7e-56 223.0 209 56.5
FAN05G3122 Fragaria x ananassa HOM05D004846 ORTHO05D005630 3.5e-56 222.6 234 51.7
HanXRQChr07g0193151 Helianthus annuus HOM05D004846 ORTHO05D005630 3.5e-56 222.6 207 56.0
Lalb_Chr24g0403411 Lupinus albus HOM05D004846 ORTHO05D005630 3.5e-56 222.6 212 56.6
Nitab4.5_0001863g0210 Nicotiana tabacum HOM05D004846 ORTHO05D005630 3.5e-56 222.6 247 51.0
Solyc02g093770.3 Solanum lycopersicum HOM05D004846 ORTHO05D005630 3.5e-56 222.6 210 56.2
SalBow2G2965 Salvia bowleyana HOM05D004846 ORTHO05D005630 4.5e-56 222.2 211 55.9
Sopen02g038410 Solanum pennellii HOM05D004846 ORTHO05D005630 4.5e-56 222.2 210 56.2
MD09G1017700 Malus domestica HOM05D004846 ORTHO05D005630 5.9e-56 221.9 238 50.4
PGSC0003DMG402020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 5.9e-56 221.9 210 56.7
PGSC0003DMG403020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 5.9e-56 221.9 210 56.7
TWI15G0720 Tripterygium wilfordii HOM05D004846 ORTHO05D005630 7.7e-56 221.5 211 55.0
ClCG05G017040 Citrullus lanatus HOM05D004846 ORTHO05D005630 1.0e-55 221.1 202 58.9
FAN14G2722 Fragaria x ananassa HOM05D004846 ORTHO05D005630 1.3e-55 220.7 234 51.7
Sc09g0010530 Simmondsia chinensis HOM05D004846 ORTHO05D005630 1.3e-55 220.7 212 54.2
MELO3C003688.2 Cucumis melo HOM05D004846 ORTHO05D005630 1.7e-55 220.3 202 57.9
Psat3g169160 Pisum sativum HOM05D004846 ORTHO05D005630 1.7e-55 220.3 233 52.4
RcHm_v2.0_Chr2g0174121 Rosa chinensis HOM05D004846 ORTHO05D005630 2.3e-55 219.9 206 56.8
BcaC06g31008 Brassica carinata HOM05D004846 ORTHO05D005630 2.9e-55 219.5 209 57.4
Glyma.19G082100 Glycine max HOM05D004846 ORTHO05D005630 2.9e-55 219.5 209 55.5
SGA_v2.0_scaffold66G22277 Striga asiatica HOM05D004846 ORTHO05D005630 5.0e-55 218.8 207 56.5
ATR0751G144 Amborella trichopoda HOM05D004846 ORTHO05D005630 8.6e-55 218.0 205 56.6
Oeu062399.1 Olea europaea HOM05D004846 ORTHO05D005630 8.6e-55 218.0 207 55.6
PSO210G2938 Papaver somniferum HOM05D004846 ORTHO05D005630 8.6e-55 218.0 209 54.1
Sed0014062 Sechium edule HOM05D004846 ORTHO05D005630 1.1e-54 217.6 202 58.4
HanXRQChr02g0054051 Helianthus annuus HOM05D004846 ORTHO05D005630 1.9e-54 216.9 212 56.1
Sed0008655 Sechium edule HOM05D004846 ORTHO05D005630 3.3e-54 216.1 202 57.4
arahy.Tifrunner.gnm1.ann1.EI4BFE Arachis hypogaea HOM05D004846 ORTHO05D005630 4.2e-54 215.7 209 53.6
FAN02G3962 Fragaria x ananassa HOM05D004846 ORTHO05D005630 4.2e-54 215.7 234 50.9
A06p41290 Brassica napus HOM05D004846 ORTHO05D005630 5.5e-54 215.3 209 56.5
BraA06t27054Z Brassica rapa HOM05D004846 ORTHO05D005630 5.5e-54 215.3 209 56.5
arahy.Tifrunner.gnm1.ann1.QFX8QT Arachis hypogaea HOM05D004846 ORTHO05D005630 9.5e-54 214.5 209 53.1
SGA_v2.0_scaffold135G34938 Striga asiatica HOM05D004846 ORTHO05D005630 1.2e-53 214.2 207 56.5
Migut.H00055 Erythranthe guttata HOM05D004846 ORTHO05D005630 1.6e-53 213.8 242 50.8
HPP92_021915 Vanilla planifolia HOM05D004846 ORTHO05D005630 2.8e-53 213.0 249 49.4
BcaC06g33832 Brassica carinata HOM05D004846 ORTHO05D005630 3.6e-53 212.6 236 52.1
C07p36370 Brassica napus HOM05D004846 ORTHO05D005630 3.6e-53 212.6 236 52.1
BolC7t44153H Brassica oleracea HOM05D004846 ORTHO05D005630 3.6e-53 212.6 236 52.1
Hund19592 Selenicereus undatus HOM05D004846 ORTHO05D005630 3.6e-53 212.6 214 53.3
Aa31LG2G5360 Aethionema arabicum HOM05D004846 ORTHO05D005630 4.7e-53 212.2 207 55.6
Cc07_g00370 Coffea canephora HOM05D004846 ORTHO05D005630 6.1e-53 211.8 209 55.0
THA.LOC104805347 Tarenaya hassleriana HOM05D004846 ORTHO05D005630 6.1e-53 211.8 205 54.6
Zm00001eb308720 Zea mays HOM05D004846 ORTHO05D005630 6.1e-53 211.8 236 47.9
Thhalv10003555m.g Eutrema salsugineum HOM05D004846 ORTHO05D005630 1.0e-52 211.1 213 54.0
MBI15_g38527_MAGBIO Magnolia biondii HOM05D004846 ORTHO05D005630 1.0e-52 211.1 212 52.4
EL10Ac2g04126 Beta vulgaris HOM05D004846 ORTHO05D005630 1.4e-52 210.7 206 53.9
AUR62031596 Chenopodium quinoa HOM05D004846 ORTHO05D005630 1.8e-52 210.3 202 56.4
AT3G27325 Arabidopsis thaliana HOM05D004846 ORTHO05D005630 8.9e-52 208.0 221 53.8
MSTRG.24063 Avicennia marina HOM05D004846 ORTHO05D005630 8.9e-52 208.0 208 52.4
Carub.0005s0560 Capsella rubella HOM05D004846 ORTHO05D005630 8.9e-52 208.0 248 49.2
Sp2g16490 Schrenkiella parvula HOM05D004846 ORTHO05D005630 8.9e-52 208.0 215 53.0
AUR62012470 Chenopodium quinoa HOM05D004846 ORTHO05D005630 2.0e-51 206.8 202 55.4
AL5G16590 Arabidopsis lyrata HOM05D004846 ORTHO05D005630 5.7e-51 205.3 255 48.2
CARHR040910 Cardamine hirsuta HOM05D004846 ORTHO05D005630 1.3e-50 204.1 236 50.4
C02p54070 Brassica napus HOM05D004846 ORTHO05D005630 3.7e-50 202.6 201 55.2
BolC2t11469H Brassica oleracea HOM05D004846 ORTHO05D005630 3.7e-50 202.6 201 55.2
SEGI_08787 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 3.2e-49 199.5 242 45.9
A02p35330 Brassica napus HOM05D004846 ORTHO05D005630 9.2e-49 198.0 203 53.7
BraA02t08536Z Brassica rapa HOM05D004846 ORTHO05D005630 9.2e-49 198.0 203 53.7
Os09g0266400 Oryza sativa ssp. japonica HOM05D004846 ORTHO05D005630 1.6e-48 197.2 236 45.3
Gohir.A09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 2.7e-48 196.4 209 51.2
Ah.10g035510 Amaranthus hybridus HOM05D004846 ORTHO05D005630 4.5e-48 195.7 207 51.7
Gohir.D09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 1.7e-47 193.7 209 50.7
Gorai.006G037800 Gossypium raimondii HOM05D004846 ORTHO05D005630 1.7e-47 193.7 209 50.7
Mapoly0133s0025 Marchantia polymorpha HOM05D004846 ORTHO05D005630 5.0e-39 165.6 203 45.3
CDE02G2253 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 3.6e-37 159.5 215 46.0
AagrBONN_evm.TU.Sc2ySwM_228.569 Anthoceros agrestis HOM05D004846 ORTHO05D005630 2.9e-34 149.8 214 38.3
Pp3c12_23520 Physcomitrium patens HOM05D004846 ORTHO05D005630 2.7e-32 143.3 206 41.3
SMO119G0307 Selaginella moellendorffii HOM05D004846 ORTHO05D005630 5.1e-31 139.0 189 42.9
Pp3c14_5780 Physcomitrium patens HOM05D004846 ORTHO05D005630 6.6e-31 138.7 207 40.1
Pp3c3_36830 Physcomitrium patens HOM05D004846 ORTHO05D005630 8.6e-31 138.3 204 41.7
CDE01G0149 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 4.3e-22 109.4 73 74.0
CBR_g922 Chara braunii HOM05D004846 ORTHO05D005630 1.4e-20 104.4 203 34.5
HanXRQChr02g0047501 Helianthus annuus HOM05D004846 ORTHO05D005630 4.6e-16 89.4 91 56.0
unitig_1.g29345 Utricularia gibba HOM05D004846 ORTHO05D005630 1.7e-15 87.4 110 48.2
unitig_747.g22069 Utricularia gibba HOM05D004846 ORTHO05D005630 1.7e-15 87.4 110 48.2
CSS0012369 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.4e-09 67.8 42 81.0
CSS0025976 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.4e-09 67.8 42 81.0
CSS0029627 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.4e-09 67.8 42 81.0
CSS0035603 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.4e-09 67.8 42 81.0
CSS0003755 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 4.2e-09 66.2 42 78.6
CSS0050182 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.0e-07 61.6 42 76.2


User provided reference genes

Program Settings