Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015890 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 1.6e-231 805.8 440 100.0
CSS0033207 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 4.0e-222 774.6 440 97.3
Actinidia32167 Actinidia chinensis HOM05D004436 ORTHO05D005179 4.2e-155 552.0 408 70.1
Dinv03512 Davidia involucrata HOM05D004436 ORTHO05D005179 6.9e-150 534.6 401 68.6
Rhsim08G0236100 Rhododendron simsii HOM05D004436 ORTHO05D005179 7.0e-142 508.1 398 66.1
vmacro22224 Vaccinium macrocarpon HOM05D004436 ORTHO05D005179 4.5e-141 505.4 391 67.3
Dinv30366 Davidia involucrata HOM05D004436 ORTHO05D005179 1.1e-136 490.7 357 70.6
TAR375G0086 Trochodendron aralioides HOM05D004436 ORTHO05D005179 4.5e-133 478.8 392 61.7
GSVIVG01016817001 Vitis vinifera HOM05D004436 ORTHO05D005179 5.5e-131 471.9 393 62.3
Lj5A40G74 Lonicera japonica HOM05D004436 ORTHO05D005179 7.2e-131 471.5 394 61.9
Rhsim10G0150900 Rhododendron simsii HOM05D004436 ORTHO05D005179 9.7e-128 461.1 514 54.3
CiPaw.05G181900 Carya illinoinensis HOM05D004436 ORTHO05D005179 2.2e-127 459.9 396 60.6
CiPaw.01G221800 Carya illinoinensis HOM05D004436 ORTHO05D005179 3.1e-126 456.1 396 60.1
Hma1.2p1_0496F.1_g166100 Hydrangea macrophylla HOM05D004436 ORTHO05D005179 5.9e-125 451.8 404 58.7
PGSC0003DMG400016304 Solanum tuberosum HOM05D004436 ORTHO05D005179 6.5e-124 448.4 396 59.3
Sopen06g018390 Solanum pennellii HOM05D004436 ORTHO05D005179 1.9e-123 446.8 396 59.3
Eucgr.F03167 Eucalyptus grandis HOM05D004436 ORTHO05D005179 3.2e-123 446.0 395 58.5
Solyc06g053330.4 Solanum lycopersicum HOM05D004436 ORTHO05D005179 3.2e-123 446.0 396 59.1
CAN.G540.4 Capsicum annuum HOM05D004436 ORTHO05D005179 8.0e-122 441.4 397 59.7
Nitab4.5_0000035g0090 Nicotiana tabacum HOM05D004436 ORTHO05D005179 4.0e-121 439.1 390 59.7
Oeu044709.1 Olea europaea HOM05D004436 ORTHO05D005179 2.2e-119 433.3 398 56.3
Ciclev10025597m.g Citrus clementina HOM05D004436 ORTHO05D005179 3.7e-119 432.6 393 56.2
Peaxi162Scf00943g00014 Petunia axillaris HOM05D004436 ORTHO05D005179 1.4e-118 430.6 392 57.4
MSTRG.22562 Avicennia marina HOM05D004436 ORTHO05D005179 3.5e-117 426.0 399 56.6
Peaxi162Scf00647g00219 Petunia axillaris HOM05D004436 ORTHO05D005179 7.7e-117 424.9 392 56.6
Oeu047041.1 Olea europaea HOM05D004436 ORTHO05D005179 1.5e-115 420.6 383 56.4
Thecc.03G227200 Theobroma cacao HOM05D004436 ORTHO05D005179 1.5e-115 420.6 416 53.4
Sc12g0010440 Simmondsia chinensis HOM05D004436 ORTHO05D005179 5.5e-115 418.7 390 57.2
Lsat_1_v5_gn_5_135221 Lactuca sativa HOM05D004436 ORTHO05D005179 7.2e-115 418.3 398 56.3
Nitab4.5_0012713g0010 Nicotiana tabacum HOM05D004436 ORTHO05D005179 7.2e-115 418.3 392 58.2
Haze_15997 Corylus avellana HOM05D004436 ORTHO05D005179 1.2e-114 417.5 433 53.1
ClCG09G000840 Citrullus lanatus HOM05D004436 ORTHO05D005179 2.1e-114 416.8 397 55.9
Actinidia21779 Actinidia chinensis HOM05D004436 ORTHO05D005179 1.0e-113 414.5 405 57.8
CsaV3_7G034640 Cucumis sativus L. HOM05D004436 ORTHO05D005179 1.0e-113 414.5 394 55.6
MELO3C024372.2 Cucumis melo HOM05D004436 ORTHO05D005179 5.2e-113 412.1 394 55.8
Cpa.g.sc25.86 Carica papaya HOM05D004436 ORTHO05D005179 6.8e-113 411.8 417 53.7
Manes.04G142200 Manihot esculenta HOM05D004436 ORTHO05D005179 2.0e-112 410.2 417 54.4
Prupe.3G044800 Prunus persica HOM05D004436 ORTHO05D005179 5.7e-112 408.7 390 54.6
Duzib205G0267 Durio zibethinus HOM05D004436 ORTHO05D005179 9.8e-112 407.9 406 54.2
TWI23G0436 Tripterygium wilfordii HOM05D004436 ORTHO05D005179 1.3e-111 407.5 393 56.0
Manes.11G023100 Manihot esculenta HOM05D004436 ORTHO05D005179 2.2e-111 406.8 423 53.2
Atru.chr1.3808 Acer truncatum HOM05D004436 ORTHO05D005179 4.9e-111 405.6 372 57.5
DCAR_026403 Daucus carota HOM05D004436 ORTHO05D005179 8.3e-111 404.8 393 53.2
HanXRQChr10g0312341 Helianthus annuus HOM05D004436 ORTHO05D005179 5.4e-110 402.1 393 55.5
Potri.001G198600 Populus trichocarpa HOM05D004436 ORTHO05D005179 9.2e-110 401.4 415 51.3
ECA234G4408 Erigeron canadensis HOM05D004436 ORTHO05D005179 4.5e-109 399.1 389 54.0
CANSAT56G1493 Cannabis sativa HOM05D004436 ORTHO05D005179 1.3e-108 397.5 393 54.2
Lj6g0016044 Lotus japonicus HOM05D004436 ORTHO05D005179 8.6e-108 394.8 391 50.9
Sed0020704 Sechium edule HOM05D004436 ORTHO05D005179 1.9e-107 393.7 392 53.8
PGR119G1065 Punica granatum HOM05D004436 ORTHO05D005179 3.3e-107 392.9 390 53.6
Sed0007780 Sechium edule HOM05D004436 ORTHO05D005179 4.3e-107 392.5 398 53.3
Hund20819 Selenicereus undatus HOM05D004436 ORTHO05D005179 2.8e-106 389.8 388 53.1
Lalb_Chr08g0233321 Lupinus albus HOM05D004436 ORTHO05D005179 4.7e-106 389.0 388 53.1
Sabra01G0155800 Salix brachista HOM05D004436 ORTHO05D005179 6.1e-106 388.7 428 49.3
MD09G1187900 Malus domestica HOM05D004436 ORTHO05D005179 1.4e-105 387.5 393 51.7
RcHm_v2.0_Chr2g0144531 Rosa chinensis HOM05D004436 ORTHO05D005179 1.8e-105 387.1 393 53.7
COL.COLO4_30482 Corchorus olitorius HOM05D004436 ORTHO05D005179 5.2e-105 385.6 411 52.6
FAN09G2135 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.5e-104 384.0 391 53.5
Glyma.15G165300 Glycine max HOM05D004436 ORTHO05D005179 2.0e-104 383.6 382 53.7
FAN02G3564 Fragaria x ananassa HOM05D004436 ORTHO05D005179 9.8e-104 381.3 391 52.9
Gohir.D03G171700 Gossypium hirsutum HOM05D004436 ORTHO05D005179 1.3e-103 380.9 409 50.1
SGA_v2.0_scaffold68G22895 Striga asiatica HOM05D004436 ORTHO05D005179 1.3e-103 380.9 391 52.2
Gorai.003G182300 Gossypium raimondii HOM05D004436 ORTHO05D005179 4.9e-103 379.0 409 50.1
FvH4_6g34180 Fragaria vesca HOM05D004436 ORTHO05D005179 6.4e-103 378.6 391 52.9
FAN05G5343 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.1e-102 377.9 391 52.4
THA.LOC104804933 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 3.2e-102 376.3 403 50.4
Migut.D00948 Erythranthe guttata HOM05D004436 ORTHO05D005179 7.0e-102 375.2 401 49.1
Gohir.A03G000500 Gossypium hirsutum HOM05D004436 ORTHO05D005179 7.0e-102 375.2 409 49.6
Cc04_g01610 Coffea canephora HOM05D004436 ORTHO05D005179 1.6e-101 374.0 317 62.1
PSO135G0558 Papaver somniferum HOM05D004436 ORTHO05D005179 6.6e-100 368.6 396 50.3
PSO724G1089 Papaver somniferum HOM05D004436 ORTHO05D005179 3.3e-99 366.3 396 50.5
Aqoxy2G00706 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 1.6e-98 364.0 394 49.2
FAN26G0630 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.6e-98 364.0 391 51.7
Sp3g12180 Schrenkiella parvula HOM05D004436 ORTHO05D005179 2.1e-98 363.6 389 47.8
FAN14G2695 Fragaria x ananassa HOM05D004436 ORTHO05D005179 6.2e-98 362.1 427 48.7
Aa31LG8G1130 Aethionema arabicum HOM05D004436 ORTHO05D005179 1.8e-97 360.5 397 49.1
Thhalv10020760m.g Eutrema salsugineum HOM05D004436 ORTHO05D005179 3.1e-97 359.8 394 49.0
CDE07G0038 Ceratophyllum demersum HOM05D004436 ORTHO05D005179 2.0e-96 357.1 408 47.8
RcHm_v2.0_Chr2g0166351 Rosa chinensis HOM05D004436 ORTHO05D005179 2.6e-96 356.7 393 52.2
Ca_02096_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 3.4e-96 356.3 391 50.1
Phvul.009G236700 Phaseolus vulgaris HOM05D004436 ORTHO05D005179 9.8e-96 354.8 385 50.6
AL3G26120 Arabidopsis lyrata HOM05D004436 ORTHO05D005179 2.9e-95 353.2 392 47.2
arahy.Tifrunner.gnm1.ann1.0TY6IG Arachis hypogaea HOM05D004436 ORTHO05D005179 4.9e-95 352.4 394 48.0
arahy.Tifrunner.gnm1.ann1.4RDH3B Arachis hypogaea HOM05D004436 ORTHO05D005179 2.4e-94 350.1 394 47.7
AT3G13940 Arabidopsis thaliana HOM05D004436 ORTHO05D005179 2.1e-93 347.1 392 46.9
AUR62009860 Chenopodium quinoa HOM05D004436 ORTHO05D005179 6.0e-93 345.5 392 47.2
COL.COLO4_17027 Corchorus olitorius HOM05D004436 ORTHO05D005179 6.0e-93 345.5 353 54.1
FvH4_6g47280 Fragaria vesca HOM05D004436 ORTHO05D005179 1.3e-92 344.4 400 51.0
QL05p009436 Quercus lobata HOM05D004436 ORTHO05D005179 1.3e-92 344.4 604 36.1
EL10Ac7g16380 Beta vulgaris HOM05D004436 ORTHO05D005179 1.9e-91 340.5 392 47.4
Peaxi162Scf00060g02815 Petunia axillaris HOM05D004436 ORTHO05D005179 7.3e-91 338.6 391 48.8
EL10Ac7g16378 Beta vulgaris HOM05D004436 ORTHO05D005179 1.2e-90 337.8 392 47.7
Carub.0003s1351 Capsella rubella HOM05D004436 ORTHO05D005179 1.6e-90 337.4 393 45.5
TPR.G13789 Trifolium pratense HOM05D004436 ORTHO05D005179 2.8e-90 336.7 392 47.4
Medtr2g037880 Medicago truncatula HOM05D004436 ORTHO05D005179 3.1e-89 333.2 391 46.3
BcaB04g20967 Brassica carinata HOM05D004436 ORTHO05D005179 4.0e-89 332.8 394 46.2
Medtr7g104810 Medicago truncatula HOM05D004436 ORTHO05D005179 5.2e-89 332.4 394 46.4
unitig_26.g9010 Utricularia gibba HOM05D000572 ORTHO05D002399 1.2e-88 331.3 394 47.0
CARHR088750 Cardamine hirsuta HOM05D004436 ORTHO05D005179 2.0e-88 330.5 406 44.1
Ah.07g197300 Amaranthus hybridus HOM05D004436 ORTHO05D005179 7.6e-88 328.6 390 46.2
BcaC09g48383 Brassica carinata HOM05D004436 ORTHO05D005179 2.9e-87 326.6 387 45.0
C01p50660 Brassica napus HOM05D004436 ORTHO05D005179 2.9e-87 326.6 387 45.0
BolC1t05015H Brassica oleracea HOM05D004436 ORTHO05D005179 2.9e-87 326.6 387 45.0
BraA01t04010Z Brassica rapa HOM05D004436 ORTHO05D005179 2.9e-87 326.6 387 45.2
AUR62001510 Chenopodium quinoa HOM05D004436 ORTHO05D005179 2.9e-87 326.6 417 43.9
A01p39710 Brassica napus HOM05D004436 ORTHO05D005179 3.7e-87 326.2 387 45.2
Psat1g144000 Pisum sativum HOM05D004436 ORTHO05D005179 6.4e-87 325.5 391 45.8
Medtr2g037460 Medicago truncatula HOM05D004436 ORTHO05D005179 1.9e-83 313.9 389 45.2
Nn6g35749 Nelumbo nucifera HOM05D004436 ORTHO05D005179 1.6e-82 310.8 392 46.4
Nitab4.5_0004287g0020 Nicotiana tabacum HOM05D004436 ORTHO05D005179 1.7e-79 300.8 389 46.5
MD17G1172300 Malus domestica HOM05D004436 ORTHO05D005179 9.6e-75 285.0 305 48.2
ATR0762G049 Amborella trichopoda HOM05D004436 ORTHO05D005179 1.8e-73 280.8 420 41.9
HPP92_009424 Vanilla planifolia HOM05D004436 ORTHO05D005179 1.5e-72 277.7 400 42.5
FAN24G2018 Fragaria x ananassa HOM05D004436 ORTHO05D005179 2.0e-72 277.3 384 44.3
Zm00001eb166800 Zea mays HOM05D004436 ORTHO05D005179 8.7e-60 235.3 392 38.0
FvH4_2g14600 Fragaria vesca HOM05D004436 ORTHO05D005179 1.5e-59 234.6 297 46.8
Lj6g0018808 Lotus japonicus HOM05D004436 ORTHO05D005179 1.6e-58 231.1 245 49.4
Os11g0615100 Oryza sativa ssp. japonica HOM05D004436 ORTHO05D005179 4.9e-55 219.5 396 38.1
TPR.G16505 Trifolium pratense HOM05D004436 ORTHO05D005179 1.2e-53 214.9 218 48.2
Ca_27339_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 4.6e-53 213.0 281 44.5
THA.LOC104822769 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 1.8e-52 211.1 238 51.3
Ah.08g216510 Amaranthus hybridus HOM05D004436 ORTHO05D005179 1.4e-49 201.4 308 40.6
Pp3c8_24340 Physcomitrium patens HOM05D004436 ORTHO05D005179 1.4e-49 201.4 419 35.8
Aqoxy7G00272 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 2.0e-48 197.6 197 50.8
Carub.0003s3547 Capsella rubella HOM05D004436 ORTHO05D005179 3.4e-48 196.8 360 36.9
AagrBONN_evm.TU.Sc2ySwM_368.2707 Anthoceros agrestis HOM05D004436 ORTHO05D005179 1.4e-46 191.4 444 33.6
DCAR_023423 Daucus carota HOM05D004436 ORTHO05D005179 1.4e-46 191.4 399 33.6
FAN14G5104 Fragaria x ananassa HOM05D002326 ORTHO05D005179 8.2e-42 175.6 230 43.9
FAN27G1625 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.5e-40 171.4 375 35.5
SEGI_22335 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 1.2e-37 161.8 259 40.9
SEGI_28110 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 2.3e-36 157.5 307 37.8
Aqoxy2G02914 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 5.1e-36 156.4 136 57.4
FAN09G3702 Fragaria x ananassa HOM05D002326 ORTHO05D005179 1.4e-33 148.3 394 34.0
FAN02G4131 Fragaria x ananassa HOM05D002326 ORTHO05D005179 5.3e-33 146.4 395 33.7
Haze_06394 Corylus avellana HOM05D004436 ORTHO05D005179 1.4e-30 138.3 307 35.8
THA.LOC104822775 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 1.2e-29 135.2 155 52.9
Oeu004353.1 Olea europaea HOM05D004436 ORTHO05D005179 7.9e-29 132.5 109 60.6
FAN15G1241 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.4e-28 131.7 388 30.2
FAN20G3048 Fragaria x ananassa HOM05D004436 ORTHO05D005179 2.0e-27 127.9 244 36.5
Dinv21190 Davidia involucrata HOM05D004436 ORTHO05D005179 7.4e-27 125.9 107 57.0
ATR0185G001 Amborella trichopoda HOM05D004436 ORTHO05D005179 1.4e-25 121.7 140 50.0
Mapoly0063s0055 Marchantia polymorpha HOM05D004436 ORTHO05D005179 4.1e-25 120.2 332 31.0
CBR_g45967 Chara braunii HOM05D004436 ORTHO05D005179 4.7e-21 106.7 454 24.7
AUR62000997 Chenopodium quinoa HOM05D004436 ORTHO05D005179 2.3e-20 104.4 136 43.4
TPR.G16496 Trifolium pratense HOM05D004436 ORTHO05D005179 2.3e-20 104.4 148 39.9
Aqoxy2G02915 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 5.7e-19 99.8 130 40.8
PGSC0003DMG400002436 Solanum tuberosum HOM05D004436 ORTHO05D005179 1.3e-18 98.6 92 57.6
Oeu027301.1 Olea europaea HOM05D004436 ORTHO05D005179 8.2e-18 95.9 146 42.5
AL1G64440 Arabidopsis lyrata HOM05D004436 ORTHO05D005179 2.4e-17 94.4 202 31.2
SEGI_36774 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 2.2e-15 87.8 97 47.4
SMO144G0124 Selaginella moellendorffii HOM05D004436 ORTHO05D005179 3.0e-12 77.4 89 42.7
Peaxi162Scf01131g00007 Petunia axillaris HOM05D004436 ORTHO05D005179 1.7e-10 71.6 131 35.1
PSO017G0055 Papaver somniferum HOM05D004436 ORTHO05D005179 4.5e-08 63.5 126 35.7
Psat6g077080 Pisum sativum HOM05D001891 ORTHO05D005832 1.7e-07 61.6 122 36.1
Psat6g077120 Pisum sativum HOM05D001891 ORTHO05D005832 1.7e-07 61.6 122 36.1
Cre01.g070567 Chlamydomonas reinhardtii HOM05D004436 ORTHO05D005179 3.2e-06 57.4 392 23.7
TPR.G26235 Trifolium pratense HOM05D001104 ORTHO05D006535 5.5e-06 56.6 98 35.7


User provided reference genes

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