Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015887 Camellia sinensis var. sinensis HOM05D000770 ORTHO05D000586 1.4e-83 313.2 181 100.0
CSS0007042 Camellia sinensis var. sinensis HOM05D000770 ORTHO05D000586 1.3e-30 137.1 135 62.2
TAR636G3576 Trochodendron aralioides HOM05D000770 ORTHO05D000586 2.7e-15 86.3 70 68.6
Aqoxy2G03468 Aquilegia oxysepala HOM05D000770 ORTHO05D000586 3.5e-15 85.9 70 67.1
VMungo0720G1226 Vigna mungo HOM05D000770 ORTHO05D000586 3.5e-15 85.9 70 67.1
EL10Ac3g06503 Beta vulgaris HOM05D000770 ORTHO05D000586 4.6e-15 85.5 70 67.1
Oeu058957.2 Olea europaea HOM05D000770 ORTHO05D000586 4.6e-15 85.5 111 46.8
Glyma.10G243300 Glycine max HOM05D000770 ORTHO05D000586 6.0e-15 85.1 70 67.1
Phvul.007G062400 Phaseolus vulgaris HOM05D000770 ORTHO05D000586 7.8e-15 84.7 70 67.1
TAR365G1031 Trochodendron aralioides HOM05D000770 ORTHO05D000586 7.8e-15 84.7 70 68.6
TAR383G0990 Trochodendron aralioides HOM05D000770 ORTHO05D000586 7.8e-15 84.7 70 68.6
Glyma.20G150900 Glycine max HOM05D000770 ORTHO05D000586 1.3e-14 84.0 70 65.7
Ca_10842_v3 Cicer arietinum L. HOM05D000770 ORTHO05D000586 3.0e-14 82.8 70 65.7
MD13G1201000 Malus domestica HOM05D000770 ORTHO05D000586 3.0e-14 82.8 70 65.7
Solyc09g082780.3 Solanum lycopersicum HOM05D000770 ORTHO05D000586 3.0e-14 82.8 70 64.3
Sopen09g031630 Solanum pennellii HOM05D000770 ORTHO05D000586 3.0e-14 82.8 70 64.3
PGSC0003DMG400030170 Solanum tuberosum HOM05D000770 ORTHO05D000586 3.0e-14 82.8 70 64.3
Nitab4.5_0007166g0030 Nicotiana tabacum HOM05D000770 ORTHO05D000586 3.9e-14 82.4 70 64.3
RcHm_v2.0_Chr4g0388131 Rosa chinensis HOM05D000770 ORTHO05D000586 3.9e-14 82.4 70 65.7
FAN12G2084 Fragaria x ananassa HOM05D000770 ORTHO05D000586 5.1e-14 82.0 78 59.0
MD16G1200200 Malus domestica HOM05D000770 ORTHO05D000586 5.1e-14 82.0 70 64.3
Oeu063367.1 Olea europaea HOM05D000770 ORTHO05D000586 5.1e-14 82.0 70 62.9
Nitab4.5_0002652g0010 Nicotiana tabacum HOM05D000770 ORTHO05D000586 6.6e-14 81.6 70 64.3
Sc19g0003930 Simmondsia chinensis HOM05D000770 ORTHO05D000586 1.5e-13 80.5 70 62.9
Prupe.1G022400 Prunus persica HOM05D000770 ORTHO05D000586 1.9e-13 80.1 70 64.3
TPR.G32788 Trifolium pratense HOM05D000770 ORTHO05D000586 2.5e-13 79.7 70 64.3
Cc03_g04340 Coffea canephora HOM05D000770 ORTHO05D000586 3.3e-13 79.3 70 65.7
Lj3A725T49 Lonicera japonica HOM05D000770 ORTHO05D000586 4.3e-13 79.0 70 61.4
arahy.Tifrunner.gnm1.ann1.RC06K7 Arachis hypogaea HOM05D000770 ORTHO05D000586 5.6e-13 78.6 70 62.9
arahy.Tifrunner.gnm1.ann1.U6FHN5 Arachis hypogaea HOM05D000770 ORTHO05D000586 5.6e-13 78.6 70 62.9
FvH4_4g01560 Fragaria vesca HOM05D000770 ORTHO05D000586 7.3e-13 78.2 70 62.9
FAN17G0653 Fragaria x ananassa HOM05D000770 ORTHO05D000586 7.3e-13 78.2 70 61.4
FAN22G2101 Fragaria x ananassa HOM05D000770 ORTHO05D000586 7.3e-13 78.2 70 62.9
Hma1.2p1_0549F.1_g177050 Hydrangea macrophylla HOM05D000770 ORTHO05D000586 7.3e-13 78.2 70 61.4
Hma1.2p1_1311F.1_g274850 Hydrangea macrophylla HOM05D000770 ORTHO05D000586 7.3e-13 78.2 70 61.4
Lalb_Chr03g0037481 Lupinus albus HOM05D000770 ORTHO05D000586 7.3e-13 78.2 70 64.3
Peaxi162Scf00316g00330 Petunia axillaris HOM05D000770 ORTHO05D000586 7.3e-13 78.2 70 61.4
Sabra08G0120700 Salix brachista HOM05D000770 ORTHO05D000586 7.3e-13 78.2 70 58.6
Cpa.g.sc44.127 Carica papaya HOM05D000770 ORTHO05D000586 9.6e-13 77.8 70 61.4
Lj5g0024204 Lotus japonicus HOM05D000770 ORTHO05D000586 9.6e-13 77.8 70 62.9
Potri.010G081600 Populus trichocarpa HOM05D000770 ORTHO05D000586 9.6e-13 77.8 70 60.0
SGA_v2.0_scaffold79G25598 Striga asiatica HOM05D000770 ORTHO05D000586 9.6e-13 77.8 70 58.6
CiPaw.01G194800 Carya illinoinensis HOM05D000770 ORTHO05D000586 2.1e-12 76.6 109 44.0
PSO461G0060 Papaver somniferum HOM05D000770 ORTHO05D000586 2.1e-12 76.6 71 57.7
Lj6A646T81 Lonicera japonica HOM05D000770 ORTHO05D000586 2.8e-12 76.3 72 63.9
Manes.03G172750 Manihot esculenta HOM05D000770 ORTHO05D000586 2.8e-12 76.3 70 60.0
TPR.G26104 Trifolium pratense HOM05D005582 ORTHO05D007028 2.8e-12 76.3 70 61.4
Haze_11237 Corylus avellana HOM05D000770 ORTHO05D000586 3.6e-12 75.9 70 64.3
Gohir.A01G024100 Gossypium hirsutum HOM05D000770 ORTHO05D000586 3.6e-12 75.9 88 53.4
Psat6g103520 Pisum sativum HOM05D000770 ORTHO05D000586 3.6e-12 75.9 70 61.4
Sabra10G0061300 Salix brachista HOM05D000770 ORTHO05D000586 3.6e-12 75.9 70 58.6
AUR62034681 Chenopodium quinoa HOM05D000770 ORTHO05D000586 4.7e-12 75.5 70 60.0
CAN.G1435.10 Capsicum annuum HOM05D000770 ORTHO05D000586 6.2e-12 75.1 70 58.6
Migut.G00387 Erythranthe guttata HOM05D000770 ORTHO05D000586 6.2e-12 75.1 71 62.0
Gohir.D01G022100 Gossypium hirsutum HOM05D000770 ORTHO05D000586 6.2e-12 75.1 70 58.6
Gorai.002G024600 Gossypium raimondii HOM05D000770 ORTHO05D000586 6.2e-12 75.1 70 58.6
QL06p000840 Quercus lobata HOM05D000770 ORTHO05D000586 6.2e-12 75.1 70 61.4
CANSAT78G2309 Cannabis sativa HOM05D000770 ORTHO05D000586 8.1e-12 74.7 70 60.0
Ciclev10005714m.g Citrus clementina HOM05D000770 ORTHO05D000586 8.1e-12 74.7 70 58.6
ECA240G2056 Erigeron canadensis HOM05D000770 ORTHO05D000586 8.1e-12 74.7 72 58.3
Oeu018186.1 Olea europaea HOM05D000770 ORTHO05D000586 8.1e-12 74.7 71 54.9
PSO210G0002 Papaver somniferum HOM05D000770 ORTHO05D000586 8.1e-12 74.7 71 56.3
MSTRG.9947 Avicennia marina HOM05D000770 ORTHO05D000586 1.1e-11 74.3 70 58.6
Cfa008429 Carpinus fangiana HOM05D000770 ORTHO05D000586 1.1e-11 74.3 70 62.9
Hund02866 Selenicereus undatus HOM05D000770 ORTHO05D000586 1.1e-11 74.3 89 49.4
CiPaw.02G119900 Carya illinoinensis HOM05D000770 ORTHO05D000586 1.4e-11 73.9 70 60.0
AUR62042981 Chenopodium quinoa HOM05D000770 ORTHO05D000586 1.4e-11 73.9 70 61.4
Migut.N00214 Erythranthe guttata HOM05D000770 ORTHO05D000586 1.4e-11 73.9 68 55.9
Manes.15G033200 Manihot esculenta HOM05D000770 ORTHO05D000586 1.4e-11 73.9 70 58.6
Rhsim04G0196800 Rhododendron simsii HOM05D000770 ORTHO05D000586 1.4e-11 73.9 70 62.9
TWI09G0455 Tripterygium wilfordii HOM05D000770 ORTHO05D000586 1.4e-11 73.9 109 42.2
Ah.13g071790 Amaranthus hybridus HOM05D000770 ORTHO05D000586 1.8e-11 73.6 70 61.4
COL.COLO4_21573 Corchorus olitorius HOM05D000770 ORTHO05D000586 1.8e-11 73.6 109 42.2
DCAR_030690 Daucus carota HOM05D000770 ORTHO05D000586 1.8e-11 73.6 69 63.8
GSVIVG01018050001 Vitis vinifera HOM05D000770 ORTHO05D000586 1.8e-11 73.6 70 58.6
DCAR_002365 Daucus carota HOM05D000770 ORTHO05D000586 2.4e-11 73.2 70 61.4
Gohir.A09G057000 Gossypium hirsutum HOM05D000770 ORTHO05D000586 2.4e-11 73.2 109 39.4
Potri.008G158400 Populus trichocarpa HOM05D000770 ORTHO05D000586 2.4e-11 73.2 70 55.7
Medtr1g102680 Medicago truncatula HOM05D000770 ORTHO05D000586 3.1e-11 72.8 70 62.9
CSS0017632 Camellia sinensis var. sinensis HOM05D000770 ORTHO05D000586 4.0e-11 72.4 70 60.0
Carub.0003s2299 Capsella rubella HOM05D000770 ORTHO05D000586 4.0e-11 72.4 70 57.1
Gohir.D09G056200 Gossypium hirsutum HOM05D000770 ORTHO05D000586 4.0e-11 72.4 109 39.4
Gorai.006G069700 Gossypium raimondii HOM05D000770 ORTHO05D000586 4.0e-11 72.4 109 39.4
Medtr1g041380 Medicago truncatula HOM05D000770 ORTHO05D000586 4.0e-11 72.4 70 60.0
Actinidia04507 Actinidia chinensis HOM05D000770 ORTHO05D000586 5.2e-11 72.0 70 61.4
Ah.11g050190 Amaranthus hybridus HOM05D000770 ORTHO05D000586 5.2e-11 72.0 70 54.3
AL3G37190 Arabidopsis lyrata HOM05D000770 ORTHO05D000586 5.2e-11 72.0 70 57.1
Thhalv10021396m.g Eutrema salsugineum HOM05D000770 ORTHO05D000586 5.2e-11 72.0 70 55.7
THA.LOC104801111 Tarenaya hassleriana HOM05D000770 ORTHO05D000586 5.2e-11 72.0 70 55.7
Thecc.04G239500 Theobroma cacao HOM05D000770 ORTHO05D000586 5.2e-11 72.0 70 54.3
BcaC01g03413 Brassica carinata HOM05D000770 ORTHO05D000586 6.8e-11 71.6 80 51.2
C03p52810 Brassica napus HOM05D000770 ORTHO05D000586 6.8e-11 71.6 80 51.2
BolC3t17550H Brassica oleracea HOM05D000770 ORTHO05D000586 6.8e-11 71.6 80 51.2
Duzib212G0482 Durio zibethinus HOM05D000770 ORTHO05D000586 6.8e-11 71.6 70 55.7
Lsat_1_v5_gn_7_66020 Lactuca sativa HOM05D000770 ORTHO05D000586 6.8e-11 71.6 70 54.3
MELO3C006497.2 Cucumis melo HOM05D000770 ORTHO05D000586 8.9e-11 71.2 70 58.6
CsaV3_3G012870 Cucumis sativus L. HOM05D000770 ORTHO05D000586 8.9e-11 71.2 70 57.1
HanXRQChr09g0250351 Helianthus annuus HOM05D000770 ORTHO05D000586 8.9e-11 71.2 70 54.3
PGR142G3508 Punica granatum HOM05D000770 ORTHO05D000586 8.9e-11 71.2 70 57.1
Actinidia40115 Actinidia chinensis HOM05D000770 ORTHO05D000586 1.2e-10 70.9 76 57.9
BcaC01g03414 Brassica carinata HOM05D000770 ORTHO05D000586 1.2e-10 70.9 69 56.5
CARHR098740 Cardamine hirsuta HOM05D000770 ORTHO05D000586 1.2e-10 70.9 70 57.1
Dinv44579 Davidia involucrata HOM05D000770 ORTHO05D000586 1.2e-10 70.9 69 60.9
Duzib151G0013 Durio zibethinus HOM05D000770 ORTHO05D000586 1.2e-10 70.9 109 40.4
CSS0042653 Camellia sinensis var. sinensis HOM05D000770 ORTHO05D000586 1.5e-10 70.5 89 47.2
AT3G22850 Arabidopsis thaliana HOM05D000770 ORTHO05D000586 2.0e-10 70.1 70 55.7
ClCG05G004830 Citrullus lanatus HOM05D000770 ORTHO05D000586 2.0e-10 70.1 94 48.9
Nn1g02466 Nelumbo nucifera HOM05D000770 ORTHO05D000586 2.6e-10 69.7 70 55.7
SalBow2G2536 Salvia bowleyana HOM05D000770 ORTHO05D000586 2.6e-10 69.7 70 55.7
vmacro08380 Vaccinium macrocarpon HOM05D000770 ORTHO05D000586 2.6e-10 69.7 70 57.1
Atru.chr4.2335 Acer truncatum HOM05D000770 ORTHO05D000586 3.4e-10 69.3 81 54.3
AL8G16320 Arabidopsis lyrata HOM05D000770 ORTHO05D000586 3.4e-10 69.3 70 51.4
A03p43000 Brassica napus HOM05D000770 ORTHO05D000586 3.4e-10 69.3 80 50.0
SalBow3G4136 Salvia bowleyana HOM05D000770 ORTHO05D000586 3.4e-10 69.3 70 51.4
Hund20643 Selenicereus undatus HOM05D000770 ORTHO05D000586 3.4e-10 69.3 69 55.1
AT5G43830 Arabidopsis thaliana HOM05D000770 ORTHO05D000586 4.4e-10 68.9 70 51.4
BraA03t13444Z Brassica rapa HOM05D000770 ORTHO05D000586 4.4e-10 68.9 70 54.3
Carub.0008s0479 Capsella rubella HOM05D000770 ORTHO05D000586 4.4e-10 68.9 70 51.4
Lalb_Chr21g0304791 Lupinus albus HOM05D000770 ORTHO05D000586 4.4e-10 68.9 70 57.1
Gohir.A10G117800 Gossypium hirsutum HOM05D000770 ORTHO05D000586 5.8e-10 68.6 109 38.5
Gohir.D10G149000 Gossypium hirsutum HOM05D000770 ORTHO05D000586 5.8e-10 68.6 109 38.5
Gorai.011G166300 Gossypium raimondii HOM05D000770 ORTHO05D000586 5.8e-10 68.6 109 38.5
BcaB03g14646 Brassica carinata HOM05D000770 ORTHO05D000586 7.6e-10 68.2 80 50.0
AUR62032280 Chenopodium quinoa HOM05D000770 ORTHO05D000586 7.6e-10 68.2 89 48.3
Aa31LG8G9370 Aethionema arabicum HOM05D000770 ORTHO05D000586 9.9e-10 67.8 70 57.1
Dinv14049 Davidia involucrata HOM05D003368 ORTHO05D001293 9.9e-10 67.8 65 61.5
THA.LOC104826065 Tarenaya hassleriana HOM05D000770 ORTHO05D000586 9.9e-10 67.8 74 55.4
CARHR179610 Cardamine hirsuta HOM05D000770 ORTHO05D000586 1.3e-09 67.4 70 50.0
Sp3g20570 Schrenkiella parvula HOM05D000770 ORTHO05D000586 1.3e-09 67.4 70 54.3
Sed0009004 Sechium edule HOM05D000770 ORTHO05D000586 1.3e-09 67.4 70 57.1
EL10Ac5g10489 Beta vulgaris HOM05D000770 ORTHO05D000586 2.2e-09 66.6 89 47.2
Lj6g0024293 Lotus japonicus HOM05D000770 ORTHO05D000586 2.2e-09 66.6 70 55.7
TWI73G0311 Tripterygium wilfordii HOM05D000770 ORTHO05D000586 2.2e-09 66.6 70 52.9
Lj5g0013143 Lotus japonicus HOM05D000770 ORTHO05D000586 2.9e-09 66.2 70 54.3
HPP92_001011 Vanilla planifolia HOM05D000770 ORTHO05D000586 6.4e-09 65.1 70 50.0
MSTRG.4065 Avicennia marina HOM05D000770 ORTHO05D000586 8.4e-09 64.7 70 50.0
Sc05g0001340 Simmondsia chinensis HOM05D000770 ORTHO05D000586 8.4e-09 64.7 70 50.0
AUR62011968 Chenopodium quinoa HOM05D000770 ORTHO05D000586 1.1e-08 64.3 89 47.2
Thhalv10003263m.g Eutrema salsugineum HOM05D000770 ORTHO05D000586 1.4e-08 63.9 70 50.0
SHI00521 Sapria himalayana HOM05D000770 ORTHO05D000586 3.2e-08 62.8 70 51.4
unitig_736.g22458 Utricularia gibba HOM05D000770 ORTHO05D000586 4.2e-08 62.4 72 50.0
ATR0665G593 Amborella trichopoda HOM05D000770 ORTHO05D000586 5.4e-08 62.0 89 43.8
THA.LOC104808575 Tarenaya hassleriana HOM05D000770 ORTHO05D000586 5.4e-08 62.0 68 48.5
Sp2g08630 Schrenkiella parvula HOM05D000770 ORTHO05D000586 9.3e-08 61.2 70 48.6
Aa31LG5G3460 Aethionema arabicum HOM05D000770 ORTHO05D000586 1.2e-07 60.8 70 51.4
Zm00001eb060680 Zea mays HOM05D000770 ORTHO05D000586 2.1e-07 60.1 70 47.1
Sed0012833 Sechium edule HOM05D000770 ORTHO05D000586 2.7e-07 59.7 67 53.7
Os03g0744600 Oryza sativa ssp. japonica HOM05D000770 ORTHO05D000586 3.5e-07 59.3 70 44.3
BcaC04g21900 Brassica carinata HOM05D000770 ORTHO05D000586 6.0e-07 58.5 70 48.6
C09p26010 Brassica napus HOM05D000770 ORTHO05D000586 6.0e-07 58.5 70 48.6
BolC9t55504H Brassica oleracea HOM05D000770 ORTHO05D000586 6.0e-07 58.5 70 48.6
BcaB07g31002 Brassica carinata HOM05D000770 ORTHO05D000586 7.8e-07 58.2 71 50.7
CDE10G0163 Ceratophyllum demersum HOM05D000770 ORTHO05D000586 1.0e-06 57.8 69 49.3
Zm00001eb056930 Zea mays HOM05D000770 ORTHO05D000586 3.0e-06 56.2 73 45.2
CDE10G0924 Ceratophyllum demersum HOM05D000770 ORTHO05D000586 3.9e-06 55.8 69 46.4
MBI11_g21319_MAGBIO Magnolia biondii HOM05D000770 ORTHO05D000586 3.9e-06 55.8 72 47.2
A09p20570 Brassica napus HOM05D000770 ORTHO05D000586 6.6e-06 55.1 70 47.1
BraA09t37663Z Brassica rapa HOM05D000770 ORTHO05D000586 6.6e-06 55.1 70 47.1


User provided reference genes

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