Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015862 Camellia sinensis var. sinensis HOM05D004925 ORTHO05D005643 1.0e-165 586.6 291 100.0
Dinv43491 Davidia involucrata HOM05D004925 ORTHO05D005643 1.0e-48 198.0 136 73.5
Dinv43931 Davidia involucrata HOM05D004925 ORTHO05D005643 1.0e-48 198.0 135 73.3
Hma1.2p1_0860F.1_g229570 Hydrangea macrophylla HOM05D004925 ORTHO05D005643 3.0e-40 169.9 138 63.8
Rhsim01G0134400 Rhododendron simsii HOM05D004925 ORTHO05D005643 7.3e-39 165.2 134 67.2
vmacro12585 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 3.4e-36 156.4 135 63.7
GSVIVG01001367001 Vitis vinifera HOM05D004925 ORTHO05D005643 2.9e-35 153.3 136 61.0
Actinidia15855 Actinidia chinensis HOM05D004925 ORTHO05D005643 2.1e-33 147.1 132 62.9
vmacro21156 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 2.7e-33 146.7 135 60.7
vmacro21157 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 2.7e-33 146.7 135 60.7
TAR623G0394 Trochodendron aralioides HOM05D004925 ORTHO05D005643 3.9e-32 142.9 137 55.5
Rhsim06G0015600 Rhododendron simsii HOM05D004925 ORTHO05D005643 3.3e-31 139.8 148 56.1
TAR369G0809 Trochodendron aralioides HOM05D004925 ORTHO05D005643 1.6e-30 137.5 137 54.7
Nn2g15712 Nelumbo nucifera HOM05D004925 ORTHO05D005643 3.6e-30 136.3 138 54.3
vmacro21158 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 2.4e-29 133.7 118 61.9
CANSAT11G0505 Cannabis sativa HOM05D004925 ORTHO05D005643 4.9e-27 125.9 146 52.7
CsaV3_3G032460 Cucumis sativus L. HOM05D004925 ORTHO05D005643 1.9e-23 114.0 134 48.5
MELO3C030929.2 Cucumis melo HOM05D004925 ORTHO05D005643 4.3e-23 112.8 134 47.8
ClCG10G012660 Citrullus lanatus HOM05D004925 ORTHO05D005643 4.8e-22 109.4 134 47.0
Haze_10419 Corylus avellana HOM05D006965 ORTHO05D008652 4.8e-22 109.4 139 46.8
Haze_10424 Corylus avellana HOM05D006965 ORTHO05D008652 4.8e-22 109.4 139 46.8
CiPaw.13G000800 Carya illinoinensis HOM05D004925 ORTHO05D005643 6.2e-22 109.0 137 52.6
Cfa004806 Carpinus fangiana HOM05D004925 ORTHO05D005643 1.1e-21 108.2 138 46.4
Sed0010000 Sechium edule HOM05D004925 ORTHO05D005643 2.4e-21 107.1 134 46.3
TWI73G1095 Tripterygium wilfordii HOM05D004925 ORTHO05D005643 2.6e-20 103.6 142 45.8
Sabra16G0137500 Salix brachista HOM05D004925 ORTHO05D005643 7.6e-20 102.1 155 43.9
Hma1.2p1_3637F.1_g337120 Hydrangea macrophylla HOM05D004925 ORTHO05D005643 9.9e-20 101.7 85 61.2
Potri.001G229800 Populus trichocarpa HOM05D004925 ORTHO05D005643 1.7e-19 100.9 155 45.2
TWI09G1281 Tripterygium wilfordii HOM05D004925 ORTHO05D005643 2.2e-19 100.5 148 43.9
Manes.10G151100 Manihot esculenta HOM05D004925 ORTHO05D005643 3.8e-19 99.8 165 43.0
Solyc01g073920.3 Solanum lycopersicum HOM05D004925 ORTHO05D005643 1.9e-18 97.4 143 42.7
Sopen01g033490 Solanum pennellii HOM05D004925 ORTHO05D005643 1.9e-18 97.4 143 42.7
Nitab4.5_0000892g0140 Nicotiana tabacum HOM05D004925 ORTHO05D005643 2.4e-18 97.1 132 44.7
Peaxi162Scf00878g00036 Petunia axillaris HOM05D004925 ORTHO05D005643 3.5e-17 93.2 136 44.1
Oeu024926.1 Olea europaea HOM05D004925 ORTHO05D005643 1.3e-16 91.3 137 42.3
Atru.chr11.2695 Acer truncatum HOM05D004925 ORTHO05D005643 5.1e-16 89.4 147 44.2
Prupe.2G004100 Prunus persica HOM05D004925 ORTHO05D005643 4.3e-15 86.3 133 42.9
SGA_v2.0_scaffold4G02236 Striga asiatica HOM05D001227 ORTHO05D001082 5.6e-15 85.9 141 41.1
Nitab4.5_0005278g0010 Nicotiana tabacum HOM05D004925 ORTHO05D005643 2.1e-14 84.0 152 40.8
MD02G1318600 Malus domestica HOM05D004925 ORTHO05D005643 3.7e-14 83.2 136 41.9
Aqoxy1G00133 Aquilegia oxysepala HOM05D004925 ORTHO05D005643 4.8e-14 82.8 134 40.3
Oeu053533.1 Olea europaea HOM05D004925 ORTHO05D005643 8.1e-14 82.0 137 41.6
Ciclev10032226m.g Citrus clementina HOM05D004925 ORTHO05D005643 1.1e-13 81.6 147 41.5
Lsat_1_v5_gn_1_110881 Lactuca sativa HOM05D004925 ORTHO05D005643 1.4e-13 81.3 140 42.1
MD07G1002600 Malus domestica HOM05D004925 ORTHO05D005643 1.4e-13 81.3 136 40.4
THA.LOC104801020 Tarenaya hassleriana HOM05D004925 ORTHO05D005643 1.4e-13 81.3 139 41.0
SalBow4G1354 Salvia bowleyana HOM05D004925 ORTHO05D005643 2.4e-13 80.5 143 38.5
SalBow4G3044 Salvia bowleyana HOM05D004925 ORTHO05D005643 2.4e-13 80.5 143 38.5
Cc02_g27070 Coffea canephora HOM05D004925 ORTHO05D005643 4.0e-13 79.7 158 39.9
MBI19_g23208_MAGBIO Magnolia biondii HOM05D004925 ORTHO05D005643 4.0e-13 79.7 142 40.8
QL04p000066 Quercus lobata HOM05D004925 ORTHO05D005643 4.0e-13 79.7 149 38.3
QL04p003160 Quercus lobata HOM05D004925 ORTHO05D005643 4.0e-13 79.7 149 38.3
SGA_v2.0_scaffold95G28775 Striga asiatica HOM05D004925 ORTHO05D005643 5.3e-13 79.3 134 40.3
Migut.N01664 Erythranthe guttata HOM05D004925 ORTHO05D005643 6.9e-13 79.0 136 41.2
MSTRG.5000 Avicennia marina HOM05D004925 ORTHO05D005643 2.0e-12 77.4 141 39.7
AL4G28340 Arabidopsis lyrata HOM05D004925 ORTHO05D005643 3.4e-12 76.6 135 42.2
Lj7A564G31 Lonicera japonica HOM05D004925 ORTHO05D005643 3.4e-12 76.6 67 56.7
Sc17g0006850 Simmondsia chinensis HOM05D004925 ORTHO05D005643 1.7e-11 74.3 137 40.9
PGR119G0958 Punica granatum HOM05D004925 ORTHO05D005643 2.9e-11 73.6 134 40.3
Actinidia21578 Actinidia chinensis HOM05D004925 ORTHO05D005643 3.8e-11 73.2 51 72.5
Carub.0004s1427 Capsella rubella HOM05D004925 ORTHO05D005643 2.5e-10 70.5 133 39.8
ECA248G0029 Erigeron canadensis HOM05D004925 ORTHO05D005643 3.2e-10 70.1 132 40.9
CAN.G261.6 Capsicum annuum HOM05D004925 ORTHO05D005643 9.3e-10 68.6 79 46.8
Hund25510 Selenicereus undatus HOM05D004925 ORTHO05D005643 1.6e-09 67.8 152 36.2
HanXRQChr01g0018661 Helianthus annuus HOM05D004925 ORTHO05D005643 2.7e-09 67.0 130 36.9
Thhalv10016920m.g Eutrema salsugineum HOM05D004925 ORTHO05D005643 3.5e-09 66.6 132 37.1
Sp1g03770 Schrenkiella parvula HOM05D004925 ORTHO05D005643 6.0e-09 65.9 137 38.0
AT2G32840 Arabidopsis thaliana HOM05D004925 ORTHO05D005643 3.9e-08 63.2 134 36.6
Aa31LG5G4490 Aethionema arabicum HOM05D004925 ORTHO05D005643 6.7e-08 62.4 130 39.2
Thecc.01G416300 Theobroma cacao HOM05D004925 ORTHO05D005643 6.7e-08 62.4 137 34.3
AT1G04930 Arabidopsis thaliana HOM05D004925 ORTHO05D005643 1.9e-07 60.8 132 33.3
COL.COLO4_25137 Corchorus olitorius HOM05D004925 ORTHO05D005643 1.9e-07 60.8 130 36.2
arahy.Tifrunner.gnm1.ann1.WEBP2W Arachis hypogaea HOM05D004925 ORTHO05D005643 3.3e-07 60.1 133 34.6
Gohir.A08G026720 Gossypium hirsutum HOM05D004925 ORTHO05D005643 3.3e-07 60.1 133 34.6
Lj3g0011601 Lotus japonicus HOM05D004925 ORTHO05D005643 4.3e-07 59.7 134 36.6
Sp4g15220 Schrenkiella parvula HOM05D004925 ORTHO05D005643 9.6e-07 58.5 132 34.8
unitig_22.g5889 Utricularia gibba HOM05D004925 ORTHO05D005643 2.1e-06 57.4 129 34.1
Ca_02951_v3 Cicer arietinum L. HOM05D004925 ORTHO05D005643 4.8e-06 56.2 133 36.1
CDE04G0753 Ceratophyllum demersum HOM05D004925 ORTHO05D005643 8.2e-06 55.5 137 35.0


User provided reference genes

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