Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015856 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 2.8e-55 218.4 110 100.0
CSS0009011 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 2.0e-50 202.2 118 89.0
CSS0005005 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 1.3e-49 199.5 114 89.5
CSS0044821 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 2.9e-49 198.4 114 88.6
Dinv35809 Davidia involucrata HOM05D003643 ORTHO05D005001 3.2e-43 178.3 116 76.7
vmacro11251 Vaccinium macrocarpon HOM05D003643 ORTHO05D005001 3.2e-43 178.3 114 78.1
Glyma.20G021900 Glycine max HOM05D003643 ORTHO05D005001 4.1e-43 177.9 114 75.4
GSVIVG01012096001 Vitis vinifera HOM05D003643 ORTHO05D005001 4.1e-43 177.9 114 78.9
Actinidia22386 Actinidia chinensis HOM05D003643 ORTHO05D005001 7.0e-43 177.2 114 78.1
Glyma.07G222900 Glycine max HOM05D003643 ORTHO05D005001 1.2e-42 176.4 114 74.6
TWI77G0757 Tripterygium wilfordii HOM05D003643 ORTHO05D005001 1.2e-42 176.4 114 76.3
Lj1g0022937 Lotus japonicus HOM05D003643 ORTHO05D005001 2.0e-42 175.6 114 74.6
Lj1g0023184 Lotus japonicus HOM05D003643 ORTHO05D005001 2.0e-42 175.6 114 74.6
Manes.01G122000 Manihot esculenta HOM05D003643 ORTHO05D005001 2.0e-42 175.6 114 76.3
VMungo0251G0454 Vigna mungo HOM05D003643 ORTHO05D005001 2.7e-42 175.3 114 73.7
Phvul.002G099300 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 3.5e-42 174.9 114 74.6
Phvul.003G000252 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 3.5e-42 174.9 114 74.6
Phvul.003G000304 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 3.5e-42 174.9 114 74.6
Phvul.L001601 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 3.5e-42 174.9 114 74.6
Phvul.L008901 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 3.5e-42 174.9 114 74.6
Phvul.L009001 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 3.5e-42 174.9 114 74.6
SGA_v2.0_scaffold95G28766 Striga asiatica HOM05D003643 ORTHO05D005001 4.6e-42 174.5 114 77.2
Atru.chr1.1970 Acer truncatum HOM05D003643 ORTHO05D005001 7.8e-42 173.7 114 74.6
Potri.004G075600 Populus trichocarpa HOM05D003643 ORTHO05D005001 7.8e-42 173.7 114 75.4
Phvul.L001739 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.0e-41 173.3 111 76.6
Cc09_g06330 Coffea canephora HOM05D003643 ORTHO05D005001 1.7e-41 172.6 114 74.6
Cfa023544 Carpinus fangiana HOM05D003643 ORTHO05D005001 3.0e-41 171.8 114 74.6
Ca_18772_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 5.0e-41 171.0 114 73.7
Ciclev10003667m.g Citrus clementina HOM05D003643 ORTHO05D005001 5.0e-41 171.0 114 71.1
Psat0s5231g0040 Pisum sativum HOM05D003643 ORTHO05D005001 6.6e-41 170.6 114 73.7
Psat6g043080 Pisum sativum HOM05D003643 ORTHO05D005001 6.6e-41 170.6 114 73.7
Sabra04G0050300 Salix brachista HOM05D003643 ORTHO05D005001 6.6e-41 170.6 114 75.4
SGA_v2.0_scaffold298G47674 Striga asiatica HOM05D003643 ORTHO05D005001 6.6e-41 170.6 114 75.4
arahy.Tifrunner.gnm1.ann1.EU78CH Arachis hypogaea HOM05D003643 ORTHO05D005001 1.1e-40 169.9 106 72.6
CiPaw.03G114100 Carya illinoinensis HOM05D003643 ORTHO05D005001 1.1e-40 169.9 114 71.9
Cpa.g.sc178.8 Carica papaya HOM05D003643 ORTHO05D005001 1.5e-40 169.5 114 72.8
TPR.G20995 Trifolium pratense HOM05D003643 ORTHO05D005001 1.9e-40 169.1 114 71.9
Sopen02g018250 Solanum pennellii HOM05D003643 ORTHO05D005001 3.3e-40 168.3 114 73.7
TAR365G0076 Trochodendron aralioides HOM05D003643 ORTHO05D005001 3.3e-40 168.3 114 73.7
PGSC0003DMG400010363 Solanum tuberosum HOM05D003643 ORTHO05D005001 4.3e-40 167.9 114 72.8
Ah.12g057940 Amaranthus hybridus HOM05D003643 ORTHO05D005001 5.6e-40 167.5 106 70.8
Lalb_Chr16g0385301 Lupinus albus HOM05D003643 ORTHO05D005001 7.3e-40 167.2 114 71.9
Nitab4.5_0004569g0010 Nicotiana tabacum HOM05D003643 ORTHO05D005001 7.3e-40 167.2 114 73.7
Solyc02g069120.3 Solanum lycopersicum HOM05D003643 ORTHO05D005001 7.3e-40 167.2 114 72.8
HanXRQChr14g0433091 Helianthus annuus HOM05D003643 ORTHO05D005001 9.5e-40 166.8 114 73.7
CsaV3_1G046560 Cucumis sativus L. HOM05D003643 ORTHO05D005001 1.2e-39 166.4 114 70.2
Oeu060347.1 Olea europaea HOM05D003643 ORTHO05D005001 1.2e-39 166.4 112 72.3
PGR083G1065 Punica granatum HOM05D003643 ORTHO05D005001 1.2e-39 166.4 116 71.6
Sed0017297 Sechium edule HOM05D003643 ORTHO05D005001 1.2e-39 166.4 114 71.1
Eucgr.D01040 Eucalyptus grandis HOM05D003643 ORTHO05D005001 1.6e-39 166.0 114 71.9
FvH4_3g12070 Fragaria vesca HOM05D003643 ORTHO05D005001 2.1e-39 165.6 114 71.9
FAN21G1938 Fragaria x ananassa HOM05D003643 ORTHO05D005001 2.1e-39 165.6 114 71.9
THA.LOC104822105 Tarenaya hassleriana HOM05D003643 ORTHO05D005001 2.8e-39 165.2 114 69.3
Nitab4.5_0002056g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 3.6e-39 164.9 114 72.8
Oeu052674.3 Olea europaea HOM05D003643 ORTHO05D005001 3.6e-39 164.9 112 72.3
RcHm_v2.0_Chr5g0019781 Rosa chinensis HOM05D003643 ORTHO05D005001 3.6e-39 164.9 114 71.1
Hund14697 Selenicereus undatus HOM05D003643 ORTHO05D005001 3.6e-39 164.9 114 71.1
FAN16G1159 Fragaria x ananassa HOM05D003643 ORTHO05D005001 4.7e-39 164.5 114 71.1
CAN.G1222.6 Capsicum annuum HOM05D003643 ORTHO05D005001 6.2e-39 164.1 114 71.1
Lj1C1143T1 Lonicera japonica HOM05D003643 ORTHO05D005001 6.2e-39 164.1 114 71.1
SalBow8G4557 Salvia bowleyana HOM05D003643 ORTHO05D005001 6.2e-39 164.1 112 71.4
SalBow8G5428 Salvia bowleyana HOM05D003643 ORTHO05D005001 6.2e-39 164.1 112 71.4
unitig_32.g11672 Utricularia gibba HOM05D003643 ORTHO05D005001 6.2e-39 164.1 113 69.0
Prupe.4G109100 Prunus persica HOM05D003643 ORTHO05D005001 8.0e-39 163.7 113 69.9
Thecc.04G162500 Theobroma cacao HOM05D003643 ORTHO05D005001 8.0e-39 163.7 106 77.4
arahy.Tifrunner.gnm1.ann1.PVMC8E Arachis hypogaea HOM05D003643 ORTHO05D005001 1.4e-38 162.9 114 67.5
CANSAT21G2447 Cannabis sativa HOM05D003643 ORTHO05D005001 2.3e-38 162.2 114 69.3
FAN25G0143 Fragaria x ananassa HOM05D003643 ORTHO05D005001 2.3e-38 162.2 114 70.2
TPR.G9485 Trifolium pratense HOM05D003643 ORTHO05D005001 4.0e-38 161.4 114 71.1
MD05G1254800 Malus domestica HOM05D003643 ORTHO05D005001 5.2e-38 161.0 113 69.0
SpUn0005_0160 Schrenkiella parvula HOM05D003643 ORTHO05D005001 6.8e-38 160.6 114 69.3
Medtr4g083780 Medicago truncatula HOM05D003643 ORTHO05D005001 8.9e-38 160.2 114 69.3
Duzib268G1178 Durio zibethinus HOM05D003643 ORTHO05D005001 1.2e-37 159.8 106 74.5
Gohir.D10G121400 Gossypium hirsutum HOM05D003643 ORTHO05D005001 1.2e-37 159.8 105 77.1
Gorai.011G133500 Gossypium raimondii HOM05D003643 ORTHO05D005001 1.2e-37 159.8 105 77.1
MD10G1234900 Malus domestica HOM05D003643 ORTHO05D005001 1.2e-37 159.8 113 68.1
BcaB08g36427 Brassica carinata HOM05D003643 ORTHO05D005001 1.5e-37 159.5 114 69.3
ECA246G0187 Erigeron canadensis HOM05D003643 ORTHO05D005001 1.5e-37 159.5 114 68.4
AL6G33500 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 2.0e-37 159.1 114 69.3
A10p18340 Brassica napus HOM05D003643 ORTHO05D005001 2.0e-37 159.1 114 69.3
BraA10t43914Z Brassica rapa HOM05D003643 ORTHO05D005001 2.0e-37 159.1 114 69.3
BcaC04g19578 Brassica carinata HOM05D003643 ORTHO05D005001 2.6e-37 158.7 114 69.3
C09p54110 Brassica napus HOM05D003643 ORTHO05D005001 2.6e-37 158.7 114 69.3
BolC9t58281H Brassica oleracea HOM05D003643 ORTHO05D005001 2.6e-37 158.7 114 69.3
Hund01937 Selenicereus undatus HOM05D003643 ORTHO05D005001 2.6e-37 158.7 113 69.0
Thhalv10013358m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 3.4e-37 158.3 114 68.4
BcaB01g04707 Brassica carinata HOM05D003643 ORTHO05D005001 5.8e-37 157.5 114 68.4
BcaC01g06578 Brassica carinata HOM05D003643 ORTHO05D005001 5.8e-37 157.5 114 68.4
BolC3t13712H Brassica oleracea HOM05D003643 ORTHO05D005001 5.8e-37 157.5 114 68.4
Carub.0006s2022 Capsella rubella HOM05D003643 ORTHO05D005001 5.8e-37 157.5 114 68.4
CARHR191050 Cardamine hirsuta HOM05D003643 ORTHO05D005001 5.8e-37 157.5 114 68.4
ECA238G3555 Erigeron canadensis HOM05D003643 ORTHO05D005001 5.8e-37 157.5 114 69.3
Thhalv10027733m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 5.8e-37 157.5 114 68.4
AL7G45920 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 9.8e-37 156.8 114 69.3
COL.COLO4_08070 Corchorus olitorius HOM05D003643 ORTHO05D005001 9.8e-37 156.8 155 54.2
DCAR_007797 Daucus carota HOM05D003643 ORTHO05D005001 9.8e-37 156.8 114 68.4
Migut.M01969 Erythranthe guttata HOM05D003643 ORTHO05D005001 9.8e-37 156.8 112 69.6
BraA08t33014Z Brassica rapa HOM05D003643 ORTHO05D005001 1.3e-36 156.4 114 68.4
Lsat_1_v5_gn_2_29841 Lactuca sativa HOM05D003643 ORTHO05D005001 1.3e-36 156.4 106 73.6
A03p10790 Brassica napus HOM05D003643 ORTHO05D005001 1.7e-36 156.0 114 68.4
BraA03t10388Z Brassica rapa HOM05D003643 ORTHO05D005001 1.7e-36 156.0 114 68.4
AUR62010551 Chenopodium quinoa HOM05D003643 ORTHO05D005001 1.7e-36 156.0 114 65.8
AUR62017342 Chenopodium quinoa HOM05D003643 ORTHO05D005001 1.7e-36 156.0 114 65.8
Rhsim04G0157300 Rhododendron simsii HOM05D003643 ORTHO05D005001 1.7e-36 156.0 114 71.1
Sp6g22770 Schrenkiella parvula HOM05D003643 ORTHO05D005001 1.7e-36 156.0 114 67.5
AT5G22480 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 2.2e-36 155.6 114 67.5
AT5G37340 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 2.2e-36 155.6 114 68.4
BcaB04g18097 Brassica carinata HOM05D003643 ORTHO05D005001 2.9e-36 155.2 114 66.7
A08p10150 Brassica napus HOM05D003643 ORTHO05D005001 6.4e-36 154.1 114 67.5
BcaC07g37705 Brassica carinata HOM05D003643 ORTHO05D005001 1.1e-35 153.3 114 67.5
CARHR215770 Cardamine hirsuta HOM05D003643 ORTHO05D005001 1.1e-35 153.3 114 65.8
MELO3C021772.2 Cucumis melo HOM05D003643 ORTHO05D005001 1.9e-35 152.5 114 66.7
Lsat_1_v5_gn_5_36401 Lactuca sativa HOM05D003643 ORTHO05D005001 1.9e-35 152.5 106 69.8
HPP92_015903 Vanilla planifolia HOM05D003643 ORTHO05D005001 3.2e-35 151.8 114 64.0
ClCG01G009340 Citrullus lanatus HOM05D003643 ORTHO05D005001 5.4e-35 151.0 114 65.8
HanXRQChr07g0189641 Helianthus annuus HOM05D003643 ORTHO05D005001 5.4e-35 151.0 106 69.8
TPR.G20778 Trifolium pratense HOM05D003643 ORTHO05D005001 9.2e-35 150.2 116 64.7
MBI07_g18519_MAGBIO Magnolia biondii HOM05D003643 ORTHO05D005001 2.7e-34 148.7 104 72.1
Ca_20206_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 3.5e-34 148.3 113 66.4
Pp3c15_5070 Physcomitrium patens HOM05D003643 ORTHO05D005001 6.0e-34 147.5 113 62.8
EL10Ac5g12673 Beta vulgaris HOM05D003643 ORTHO05D005001 1.0e-33 146.7 125 57.6
Zm00001eb058120 Zea mays HOM05D003643 ORTHO05D005001 3.9e-33 144.8 116 62.9
CDE02G0779 Ceratophyllum demersum HOM05D003643 ORTHO05D005001 6.6e-33 144.1 105 68.6
Nn7g37591 Nelumbo nucifera HOM05D003643 ORTHO05D005001 1.1e-32 143.3 105 69.5
Os08g0471900 Oryza sativa ssp. japonica HOM05D003643 ORTHO05D005001 1.9e-32 142.5 116 62.9
Sc22g0000430 Simmondsia chinensis HOM05D003643 ORTHO05D005001 1.9e-32 142.5 106 67.0
CBR_g34896 Chara braunii HOM05D003643 ORTHO05D005001 2.8e-31 138.7 113 60.2
CBR_g6566 Chara braunii HOM05D003643 ORTHO05D005001 2.8e-31 138.7 113 60.2
Mapoly0085s0072 Marchantia polymorpha HOM05D003643 ORTHO05D005001 3.6e-31 138.3 116 60.3
Nitab4.5_0002463g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 2.3e-30 135.6 101 69.3
PSO017G1140 Papaver somniferum HOM05D003643 ORTHO05D005001 2.3e-30 135.6 115 63.5
PSO675G9021 Papaver somniferum HOM05D003643 ORTHO05D005001 3.1e-30 135.2 115 63.5
Aa31LG9G17620 Aethionema arabicum HOM05D003643 ORTHO05D005001 2.0e-29 132.5 101 65.3
ATR0743G136 Amborella trichopoda HOM05D003643 ORTHO05D005001 2.0e-29 132.5 101 66.3
Lj1g0023481 Lotus japonicus HOM05D003643 ORTHO05D005001 2.6e-29 132.1 114 59.6
Atru.chr8.2585 Acer truncatum HOM05D003643 ORTHO05D005001 3.4e-29 131.7 96 70.8
Peaxi162Scf00128g01142 Petunia axillaris HOM05D003643 ORTHO05D005001 5.8e-29 131.0 100 67.0
Atru.chr3.103 Acer truncatum HOM05D003643 ORTHO05D005001 2.2e-28 129.0 96 70.8
Aqoxy5G01635 Aquilegia oxysepala HOM05D003643 ORTHO05D005001 2.2e-28 129.0 103 64.1
Haze_13620 Corylus avellana HOM05D003643 ORTHO05D005001 2.2e-28 129.0 73 86.3
SMO203G0021 Selaginella moellendorffii HOM05D003643 ORTHO05D005001 2.4e-27 125.6 111 55.9
CBR_g6568 Chara braunii HOM05D003643 ORTHO05D005001 6.0e-26 120.9 113 54.0
DCAR_017792 Daucus carota HOM05D003643 ORTHO05D005001 3.3e-24 115.2 74 78.4
QL07p008150 Quercus lobata HOM05D003643 ORTHO05D005001 3.8e-20 101.7 271 30.3
Peaxi162Scf00149g01017 Petunia axillaris HOM05D003643 ORTHO05D018815 1.9e-19 99.4 62 72.6
Cfa025656 Carpinus fangiana HOM05D003643 ORTHO05D005001 1.6e-18 96.3 124 41.1
Lsat_1_v5_gn_5_36361 Lactuca sativa HOM05D003643 ORTHO05D018815 3.9e-17 91.7 72 63.9
BolC8t48075H Brassica oleracea HOM05D003643 ORTHO05D018815 6.2e-15 84.3 70 60.0
BolC8t48076H Brassica oleracea HOM05D003643 ORTHO05D005001 2.9e-12 75.5 45 77.8
Peaxi162Scf00149g01022 Petunia axillaris HOM05D003643 ORTHO05D005001 2.4e-11 72.4 41 82.9
Gohir.1Z049309 Gossypium hirsutum HOM05D003643 ORTHO05D005001 1.7e-09 66.2 36 86.1
Phvul.003G000226 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.9e-08 62.8 33 84.8
Actinidia36045 Actinidia chinensis HOM05D003643 ORTHO05D005001 5.3e-06 54.7 31 74.2
RcHm_v2.0_Chr5g0019801 Rosa chinensis HOM05D003643 ORTHO05D005001 5.3e-06 54.7 48 66.7


User provided reference genes

Program Settings