Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015855 Camellia sinensis var. sinensis HOM05D049105 ORTHO05D112853 1.6e-40 169.1 93 100.0
CSS0035810 Camellia sinensis var. sinensis HOM05D049105 ORTHO05D111432 8.6e-34 146.7 83 98.8
Actinidia18904 Actinidia chinensis HOM05D000137 ORTHO05D000503 1.2e-19 99.8 102 63.7
Actinidia35119 Actinidia chinensis HOM05D000137 ORTHO05D000503 9.6e-17 90.1 102 52.0
CSS0006093 Camellia sinensis var. sinensis HOM05D000137 ORTHO05D000503 8.1e-16 87.0 92 53.3
Hma1.2p1_0669F.1_g200230 Hydrangea macrophylla HOM05D000137 ORTHO05D000503 3.4e-14 81.6 96 47.9
Dinv10184 Davidia involucrata HOM05D000137 ORTHO05D000503 4.4e-14 81.3 123 45.5
Rhsim12G0139300 Rhododendron simsii HOM05D000137 ORTHO05D000503 3.2e-12 75.1 97 58.8
Dinv26404 Davidia involucrata HOM05D000137 ORTHO05D000503 4.2e-12 74.7 119 39.5
SalBow1G1721 Salvia bowleyana HOM05D000137 ORTHO05D000503 3.5e-11 71.6 94 46.8
Ah.11g045270 Amaranthus hybridus HOM05D000137 ORTHO05D000503 1.7e-10 69.3 98 45.9
Potri.012G048600 Populus trichocarpa HOM05D000137 ORTHO05D000503 1.7e-10 69.3 92 41.3
TAR622G0127 Trochodendron aralioides HOM05D000137 ORTHO05D000503 2.3e-10 68.9 102 44.1
Nitab4.5_0006613g0010 Nicotiana tabacum HOM05D000137 ORTHO05D000503 3.0e-10 68.6 99 50.5
Nitab4.5_0000150g0100 Nicotiana tabacum HOM05D000137 ORTHO05D000503 8.7e-10 67.0 94 43.6
CAN.G463.7 Capsicum annuum HOM05D000137 ORTHO05D000503 1.5e-09 66.2 95 46.3
Nitab4.5_0005182g0020 Nicotiana tabacum HOM05D000137 ORTHO05D000503 1.5e-09 66.2 94 42.6
Nitab4.5_0024848g0010 Nicotiana tabacum HOM05D000137 ORTHO05D000503 2.5e-09 65.5 99 49.5
Cc04_g06490 Coffea canephora HOM05D000137 ORTHO05D000503 9.6e-09 63.5 97 44.3
Duzib205G1280 Durio zibethinus HOM05D000137 ORTHO05D000503 9.6e-09 63.5 99 40.4
MSTRG.4567 Avicennia marina HOM05D000137 ORTHO05D000503 1.6e-08 62.8 100 42.0
Solyc12g040680.2 Solanum lycopersicum HOM05D000137 ORTHO05D000503 1.6e-08 62.8 95 42.1
Sopen12g020260 Solanum pennellii HOM05D000137 ORTHO05D000503 1.6e-08 62.8 95 42.1
PGSC0003DMG400002452 Solanum tuberosum HOM05D000137 ORTHO05D000503 2.8e-08 62.0 93 41.9
EL10Ac5g11525 Beta vulgaris HOM05D000137 ORTHO05D000503 3.6e-08 61.6 104 50.0
Oeu041174.1 Olea europaea HOM05D000137 ORTHO05D000503 3.6e-08 61.6 87 39.1
Migut.D01568 Erythranthe guttata HOM05D000137 ORTHO05D000503 6.2e-08 60.8 107 40.2
TAR629G1860 Trochodendron aralioides HOM05D000137 ORTHO05D000503 6.2e-08 60.8 92 43.5
Ciclev10007788m.g Citrus clementina HOM05D000137 ORTHO05D000503 8.1e-08 60.5 105 48.6
Oeu031784.1 Olea europaea HOM05D000137 ORTHO05D000503 8.1e-08 60.5 104 41.3
Oeu061233.1 Olea europaea HOM05D000137 ORTHO05D000503 8.1e-08 60.5 101 41.6
SGA_v2.0_scaffold168G38496 Striga asiatica HOM05D000137 ORTHO05D000503 1.1e-07 60.1 109 41.3
Lj4g0001322 Lotus japonicus HOM05D000137 ORTHO05D000503 3.1e-07 58.5 94 45.7
Potri.015G040300 Populus trichocarpa HOM05D000137 ORTHO05D000503 3.1e-07 58.5 102 39.2
Peaxi162Scf00571g00036 Petunia axillaris HOM05D000137 ORTHO05D000503 5.3e-07 57.8 95 45.3
Gohir.A12G268500 Gossypium hirsutum HOM05D000137 ORTHO05D000503 6.9e-07 57.4 99 40.4
Gorai.008G289200 Gossypium raimondii HOM05D000137 ORTHO05D000503 6.9e-07 57.4 99 40.4
Manes.14G169900 Manihot esculenta HOM05D000137 ORTHO05D000503 9.0e-07 57.0 111 38.7
Sed0022940 Sechium edule HOM05D000137 ORTHO05D000503 9.0e-07 57.0 124 37.1
Gohir.D12G268900 Gossypium hirsutum HOM05D000137 ORTHO05D000503 1.2e-06 56.6 99 40.4
Sabra15G0056700 Salix brachista HOM05D000137 ORTHO05D000503 1.2e-06 56.6 108 38.9
Peaxi162Scf00207g00033 Petunia axillaris HOM05D000137 ORTHO05D000503 2.0e-06 55.8 114 36.0
VMungo0251G0589 Vigna mungo HOM05D000137 ORTHO05D000503 2.6e-06 55.5 94 37.2
Glyma.05G244600 Glycine max HOM05D000137 ORTHO05D000503 3.4e-06 55.1 100 47.0
Manes.06G008000 Manihot esculenta HOM05D000137 ORTHO05D000503 4.4e-06 54.7 119 36.1
Sp1g16140 Schrenkiella parvula HOM05D000137 ORTHO05D000503 4.4e-06 54.7 97 41.2
PGSC0003DMG402028796 Solanum tuberosum HOM05D000137 ORTHO05D000503 5.8e-06 54.3 102 35.3
unitig_699.g19067 Utricularia gibba HOM05D000137 ORTHO05D000503 5.8e-06 54.3 98 36.7
GSVIVG01011749001 Vitis vinifera HOM05D000137 ORTHO05D000503 5.8e-06 54.3 99 45.5
Phvul.002G328300 Phaseolus vulgaris HOM05D000137 ORTHO05D000503 7.6e-06 53.9 94 36.2
Prupe.5G231400 Prunus persica HOM05D000137 ORTHO05D000503 9.9e-06 53.5 126 41.3


User provided reference genes

Program Settings