Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015836 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 1.5e-74 282.7 138 100.0
CSS0022213 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 1.0e-67 260.0 140 92.9
CSS0002847 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 2.2e-17 92.8 43 100.0
CSS0025780 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 2.2e-17 92.8 43 100.0
GSVIVG01022203001 Vitis vinifera HOM05D004487 ORTHO05D005483 5.6e-13 78.2 45 91.1
Hma1.2p1_0375F.1_g138570 Hydrangea macrophylla HOM05D004487 ORTHO05D005483 1.6e-12 76.6 39 97.4
Hma1.2p1_0486F.1_g163280 Hydrangea macrophylla HOM05D004487 ORTHO05D005483 2.1e-12 76.3 39 94.9
HanXRQChr14g0458831 Helianthus annuus HOM05D004487 ORTHO05D005483 1.1e-11 73.9 43 86.0
Rhsim05G0180000 Rhododendron simsii HOM05D004487 ORTHO05D005483 1.1e-11 73.9 51 76.5
FAN28G1272 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.8e-11 73.2 71 56.3
FAN28G1914 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.8e-11 73.2 71 56.3
Ah.04g161200 Amaranthus hybridus HOM05D004487 ORTHO05D005483 2.3e-11 72.8 38 94.7
CiPaw.04G093900 Carya illinoinensis HOM05D004487 ORTHO05D005483 2.3e-11 72.8 39 94.9
Nitab4.5_0001495g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 2.3e-11 72.8 39 94.9
Nitab4.5_0007717g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 2.3e-11 72.8 39 94.9
Peaxi162Scf00171g00006 Petunia axillaris HOM05D004487 ORTHO05D005483 2.3e-11 72.8 48 81.2
QL06p033465 Quercus lobata HOM05D004487 ORTHO05D005483 2.3e-11 72.8 39 94.9
Solyc03g019910.3 Solanum lycopersicum HOM05D004487 ORTHO05D005483 2.3e-11 72.8 39 94.9
Sopen03g029710 Solanum pennellii HOM05D004487 ORTHO05D005483 2.3e-11 72.8 39 94.9
PGSC0003DMG400015213 Solanum tuberosum HOM05D004487 ORTHO05D005483 2.3e-11 72.8 39 94.9
Duzib147G1438 Durio zibethinus HOM05D004487 ORTHO05D005483 3.1e-11 72.4 39 92.3
Thecc.01G110300 Theobroma cacao HOM05D004487 ORTHO05D005483 3.1e-11 72.4 39 92.3
TWI53G0384 Tripterygium wilfordii HOM05D004487 ORTHO05D005483 3.1e-11 72.4 40 87.5
TAR626G1474 Trochodendron aralioides HOM05D004487 ORTHO05D005483 3.1e-11 72.4 43 83.7
CAN.G861.28 Capsicum annuum HOM05D004487 ORTHO05D005483 4.0e-11 72.0 40 92.5
AUR62005250 Chenopodium quinoa HOM05D004487 ORTHO05D005483 5.2e-11 71.6 38 94.7
Nn8g40276 Nelumbo nucifera HOM05D004487 ORTHO05D005483 6.8e-11 71.2 39 89.7
Sc16g0008840 Simmondsia chinensis HOM05D004487 ORTHO05D005483 6.8e-11 71.2 38 89.5
TAR625G1215 Trochodendron aralioides HOM05D004487 ORTHO05D005483 6.8e-11 71.2 43 81.4
vmacro21317 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 6.8e-11 71.2 40 87.5
Cc02_g15410 Coffea canephora HOM05D004487 ORTHO05D005483 1.2e-10 70.5 38 92.1
Haze_05964 Corylus avellana HOM05D004487 ORTHO05D005483 1.5e-10 70.1 39 92.3
ECA238G1615 Erigeron canadensis HOM05D004487 ORTHO05D005483 1.5e-10 70.1 39 87.2
Nitab4.5_0000477g0120 Nicotiana tabacum HOM05D004487 ORTHO05D005483 1.5e-10 70.1 40 87.5
Prupe.6G176600 Prunus persica HOM05D004487 ORTHO05D005483 1.5e-10 70.1 39 89.7
Prupe.8G078400 Prunus persica HOM05D004487 ORTHO05D005483 1.5e-10 70.1 39 89.7
TWI74G0090 Tripterygium wilfordii HOM05D004487 ORTHO05D005483 1.5e-10 70.1 39 87.2
CANSAT01G2370 Cannabis sativa HOM05D004487 ORTHO05D005483 2.0e-10 69.7 39 92.3
ClCG01G019130 Citrullus lanatus HOM05D004487 ORTHO05D005483 2.0e-10 69.7 43 79.1
ClCG05G021300 Citrullus lanatus HOM05D004487 ORTHO05D005483 2.0e-10 69.7 43 79.1
COL.COLO4_11036 Corchorus olitorius HOM05D004487 ORTHO05D005483 2.0e-10 69.7 38 92.1
MELO3C012399.2 Cucumis melo HOM05D004487 ORTHO05D005483 2.0e-10 69.7 43 79.1
CsaV3_5G036000 Cucumis sativus L. HOM05D004487 ORTHO05D005483 2.0e-10 69.7 47 74.5
CsaV3_6G045820 Cucumis sativus L. HOM05D004487 ORTHO05D005483 2.0e-10 69.7 43 79.1
Glyma.09G092600 Glycine max HOM05D004487 ORTHO05D005483 2.0e-10 69.7 39 89.7
Glyma.15G199500 Glycine max HOM05D004487 ORTHO05D005483 2.0e-10 69.7 39 89.7
Lalb_Chr11g0075201 Lupinus albus HOM05D004487 ORTHO05D005483 2.0e-10 69.7 39 89.7
MD01G1016500 Malus domestica HOM05D004487 ORTHO05D005483 2.0e-10 69.7 39 87.2
CDE04G3174 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 2.6e-10 69.3 40 85.0
FAN19G3081 Fragaria x ananassa HOM05D004487 ORTHO05D005483 2.6e-10 69.3 82 52.4
HanXRQChr07g0202331 Helianthus annuus HOM05D004487 ORTHO05D005483 2.6e-10 69.3 44 75.0
Potri.007G085100 Populus trichocarpa HOM05D004487 ORTHO05D005483 2.6e-10 69.3 39 89.7
vmacro18624 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 2.6e-10 69.3 44 81.8
Phvul.009G211400 Phaseolus vulgaris HOM05D004487 ORTHO05D005483 3.4e-10 68.9 39 87.2
arahy.Tifrunner.gnm1.ann1.0Q3DRY Arachis hypogaea HOM05D004487 ORTHO05D005483 4.4e-10 68.6 39 89.7
arahy.Tifrunner.gnm1.ann1.10QJ8K Arachis hypogaea HOM05D004487 ORTHO05D005483 4.4e-10 68.6 39 89.7
arahy.Tifrunner.gnm1.ann1.7417N6 Arachis hypogaea HOM05D004487 ORTHO05D005483 4.4e-10 68.6 39 89.7
arahy.Tifrunner.gnm1.ann1.9RVJ5A Arachis hypogaea HOM05D004487 ORTHO05D005483 4.4e-10 68.6 39 89.7
arahy.Tifrunner.gnm1.ann1.NRP8RH Arachis hypogaea HOM05D004487 ORTHO05D005483 4.4e-10 68.6 39 89.7
arahy.Tifrunner.gnm1.ann1.S1NDRU Arachis hypogaea HOM05D004487 ORTHO05D005483 4.4e-10 68.6 39 89.7
arahy.Tifrunner.gnm1.ann1.Z7G166 Arachis hypogaea HOM05D004487 ORTHO05D005483 4.4e-10 68.6 39 89.7
EL10Ac4g09863 Beta vulgaris HOM05D004487 ORTHO05D005483 4.4e-10 68.6 39 84.6
Ca_23004_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 4.4e-10 68.6 39 87.2
MELO3C007790.2 Cucumis melo HOM05D004487 ORTHO05D005483 4.4e-10 68.6 39 84.6
MD15G1334800 Malus domestica HOM05D004487 ORTHO05D005483 4.4e-10 68.6 39 84.6
Manes.12G140400 Manihot esculenta HOM05D004487 ORTHO05D005483 4.4e-10 68.6 39 89.7
Nn2g14563 Nelumbo nucifera HOM05D004487 ORTHO05D005483 4.4e-10 68.6 39 87.2
TPR.G33715 Trifolium pratense HOM05D004487 ORTHO05D005483 4.4e-10 68.6 39 87.2
MSTRG.14740 Avicennia marina HOM05D004487 ORTHO05D005483 5.8e-10 68.2 42 83.3
TPR.G36682 Trifolium pratense HOM05D005330 ORTHO05D006489 5.8e-10 68.2 42 81.0
Aqoxy2G03854 Aquilegia oxysepala HOM05D004487 ORTHO05D005483 7.5e-10 67.8 40 87.5
AUR62000713 Chenopodium quinoa HOM05D004487 ORTHO05D005483 9.8e-10 67.4 38 92.1
Ca_25628_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 9.8e-10 67.4 42 78.6
Lsat_1_v5_gn_2_120680 Lactuca sativa HOM05D004487 ORTHO05D005483 9.8e-10 67.4 39 84.6
Oeu040918.3 Olea europaea HOM05D004487 ORTHO05D005483 9.8e-10 67.4 44 77.3
Sabra07G0070400 Salix brachista HOM05D004487 ORTHO05D005483 9.8e-10 67.4 41 82.9
arahy.Tifrunner.gnm1.ann1.4M30AQ Arachis hypogaea HOM05D004487 ORTHO05D005483 1.3e-09 67.0 40 85.0
arahy.Tifrunner.gnm1.ann1.L7ETT7 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.3e-09 67.0 40 85.0
CDE04G3300 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 1.3e-09 67.0 39 84.6
DCAR_014253 Daucus carota HOM05D004487 ORTHO05D005483 1.3e-09 67.0 39 84.6
FvH4_1g21950 Fragaria vesca HOM05D004487 ORTHO05D005483 1.3e-09 67.0 39 84.6
FAN19G1427 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.3e-09 67.0 39 84.6
FAN23G0375 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.3e-09 67.0 39 84.6
Gohir.1Z049552 Gossypium hirsutum HOM05D004487 ORTHO05D005483 1.3e-09 67.0 39 84.6
Gohir.A11G053300 Gossypium hirsutum HOM05D004487 ORTHO05D005483 1.3e-09 67.0 39 84.6
Gohir.D11G056800 Gossypium hirsutum HOM05D004487 ORTHO05D005483 1.3e-09 67.0 39 84.6
Gorai.007G062000 Gossypium raimondii HOM05D004487 ORTHO05D005483 1.3e-09 67.0 39 84.6
Actinidia33369 Actinidia chinensis HOM05D004487 ORTHO05D005483 1.7e-09 66.6 38 86.8
Migut.H01422 Erythranthe guttata HOM05D004487 ORTHO05D005483 1.7e-09 66.6 42 81.0
FAN26G2580 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.7e-09 66.6 39 82.1
Lj3g0008934 Lotus japonicus HOM05D004487 ORTHO05D005483 1.7e-09 66.6 39 87.2
Lj6g0018564 Lotus japonicus HOM05D004487 ORTHO05D005483 1.7e-09 66.6 39 87.2
Nitab4.5_0007222g0010 Nicotiana tabacum HOM05D004487 ORTHO05D005483 1.7e-09 66.6 39 87.2
Zm00001eb192330 Zea mays HOM05D004487 ORTHO05D005483 2.2e-09 66.2 51 66.7
FvH4_1g25670 Fragaria vesca HOM05D004487 ORTHO05D005483 2.9e-09 65.9 39 82.1
Atru.chr3.204 Acer truncatum HOM05D004487 ORTHO05D005483 3.7e-09 65.5 39 84.6
AT4G39630 Arabidopsis thaliana HOM05D004487 ORTHO05D005483 4.9e-09 65.1 33 90.9
Psat2g176760 Pisum sativum HOM05D004487 ORTHO05D005483 6.4e-09 64.7 38 84.2
PGR004G1100 Punica granatum HOM05D004487 ORTHO05D005483 6.4e-09 64.7 44 75.0
Sabra05G0067500 Salix brachista HOM05D004487 ORTHO05D005483 6.4e-09 64.7 39 82.1
ATR0210G008 Amborella trichopoda HOM05D004487 ORTHO05D005483 1.1e-08 63.9 38 81.6
arahy.Tifrunner.gnm1.ann1.32WU9K Arachis hypogaea HOM05D004487 ORTHO05D005483 1.1e-08 63.9 39 84.6
arahy.Tifrunner.gnm1.ann1.I45DC0 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.1e-08 63.9 39 84.6
Lj2A929T16 Lonicera japonica HOM05D004487 ORTHO05D005483 1.1e-08 63.9 43 76.7
SGA_v2.0_scaffold106G30591 Striga asiatica HOM05D004487 ORTHO05D005483 1.1e-08 63.9 38 84.2
A04p10610 Brassica napus HOM05D004487 ORTHO05D005483 1.4e-08 63.5 48 68.8
Eucgr.I00528 Eucalyptus grandis HOM05D004487 ORTHO05D005483 1.4e-08 63.5 38 84.2
RcHm_v2.0_Chr2g0115971 Rosa chinensis HOM05D004487 ORTHO05D005483 1.4e-08 63.5 39 82.1
BolC4t26003H Brassica oleracea HOM05D004487 ORTHO05D005483 1.9e-08 63.2 74 52.7
Carub.0007s0150 Capsella rubella HOM05D004487 ORTHO05D005483 1.9e-08 63.2 39 82.1
Ciclev10026392m.g Citrus clementina HOM05D004487 ORTHO05D005483 1.9e-08 63.2 33 87.9
Lj2A942G27 Lonicera japonica HOM05D004487 ORTHO05D005483 1.9e-08 63.2 44 75.0
Aa31LG6G15640 Aethionema arabicum HOM05D004487 ORTHO05D005483 2.4e-08 62.8 33 87.9
AL7G11780 Arabidopsis lyrata HOM05D004487 ORTHO05D005483 2.4e-08 62.8 33 87.9
BraA04t16724Z Brassica rapa HOM05D004487 ORTHO05D005483 2.4e-08 62.8 86 48.8
CARHR247100 Cardamine hirsuta HOM05D004487 ORTHO05D005483 2.4e-08 62.8 33 87.9
Os08g0290400 Oryza sativa ssp. japonica HOM05D004487 ORTHO05D005483 2.4e-08 62.8 39 79.5
Potri.005G082500 Populus trichocarpa HOM05D004487 ORTHO05D005483 4.1e-08 62.0 39 79.5
unitig_22.g6757 Utricularia gibba HOM05D004487 ORTHO05D005483 5.4e-08 61.6 38 84.2
Oeu043116.1 Olea europaea HOM05D004487 ORTHO05D005483 7.1e-08 61.2 40 77.5
SHI54251 Sapria himalayana HOM05D004487 ORTHO05D005483 7.1e-08 61.2 38 78.9
Sp7g36260 Schrenkiella parvula HOM05D004487 ORTHO05D005483 7.1e-08 61.2 43 74.4
THA.LOC104807718 Tarenaya hassleriana HOM05D004487 ORTHO05D005483 9.2e-08 60.8 33 84.8
VMungo1309G0247 Vigna mungo HOM05D004487 ORTHO05D005483 9.2e-08 60.8 38 76.3
arahy.Tifrunner.gnm1.ann1.Y72RXW Arachis hypogaea HOM05D004487 ORTHO05D005483 1.2e-07 60.5 39 79.5
CARHR215520 Cardamine hirsuta HOM05D004487 ORTHO05D005483 1.2e-07 60.5 33 84.8
Thhalv10027902m.g Eutrema salsugineum HOM05D004487 ORTHO05D005483 1.2e-07 60.5 33 84.8
Sp7g04740 Schrenkiella parvula HOM05D004487 ORTHO05D005483 1.2e-07 60.5 33 84.8
BcaC02g09572 Brassica carinata HOM05D004487 ORTHO05D005483 3.5e-07 58.9 33 81.8
C04p44290 Brassica napus HOM05D004487 ORTHO05D005483 3.5e-07 58.9 33 81.8
HPP92_005242 Vanilla planifolia HOM05D004487 ORTHO05D005483 4.6e-07 58.5 39 74.4
BcaB06g27071 Brassica carinata HOM05D004487 ORTHO05D005483 6.0e-07 58.2 33 81.8
SEGI_02201 Sequoiadendron giganteum HOM05D004487 ORTHO05D005483 1.7e-06 56.6 32 78.1
Actinidia08329 Actinidia chinensis HOM05D004487 ORTHO05D005483 2.3e-06 56.2 28 92.9
SGA_v2.0_scaffold83G26423 Striga asiatica HOM05D004487 ORTHO05D005483 2.3e-06 56.2 39 71.8


User provided reference genes

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