Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015831 Camellia sinensis var. sinensis HOM05D006297 ORTHO05D007873 2.6e-162 575.5 326 100.0
Actinidia33772 Actinidia chinensis HOM05D006297 ORTHO05D007873 1.2e-82 310.8 362 56.1
Dinv34277 Davidia involucrata HOM05D006297 ORTHO05D007873 4.0e-78 295.8 322 56.5
CSS0020880 Camellia sinensis var. sinensis HOM05D006297 ORTHO05D007873 5.4e-67 258.8 338 50.6
Hma1.2p1_0615F.1_g189690 Hydrangea macrophylla HOM05D006297 ORTHO05D007873 5.4e-67 258.8 325 52.6
Rhsim13G0077500 Rhododendron simsii HOM05D000001 ORTHO05D010418 5.6e-64 248.8 332 50.0
QL01p030412 Quercus lobata HOM05D006297 ORTHO05D007873 1.6e-58 230.7 360 47.5
Manes.02G129500 Manihot esculenta HOM05D006297 ORTHO05D007873 4.8e-55 219.2 376 43.4
PGR119G2469 Punica granatum HOM05D006297 ORTHO05D007873 3.1e-54 216.5 361 42.7
Sabra09G0025100 Salix brachista HOM05D006297 ORTHO05D010418 3.4e-53 213.0 328 44.8
CiPaw.13G089900 Carya illinoinensis HOM05D006297 ORTHO05D007873 2.2e-52 210.3 367 43.6
Migut.D00880 Erythranthe guttata HOM05D006297 ORTHO05D007873 8.4e-52 208.4 385 41.0
Potri.009G035300 Populus trichocarpa HOM05D006297 ORTHO05D007873 1.0e-49 201.4 351 41.3
MSTRG.18559 Avicennia marina HOM05D006297 ORTHO05D007873 1.3e-49 201.1 409 36.9
Nitab4.5_0006916g0050 Nicotiana tabacum HOM05D006297 ORTHO05D007873 1.8e-49 200.7 314 44.3
GSVIVG01031399001 Vitis vinifera HOM05D006297 ORTHO05D007873 3.9e-49 199.5 309 45.3
Peaxi162Scf00481g00328 Petunia axillaris HOM05D006297 ORTHO05D007873 1.1e-48 198.0 311 42.4
TWI79G0566 Tripterygium wilfordii HOM05D000001 ORTHO05D010418 2.2e-47 193.7 348 44.0
Haze_24152 Corylus avellana HOM05D006297 ORTHO05D007873 4.8e-47 192.6 382 42.4
Cc01_g13310 Coffea canephora HOM05D006297 ORTHO05D007873 5.3e-46 189.1 394 39.3
Ciclev10029821m.g Citrus clementina HOM05D006297 ORTHO05D007873 1.0e-44 184.9 331 44.1
Eucgr.B02311 Eucalyptus grandis HOM05D006297 ORTHO05D007873 3.8e-44 183.0 382 39.3
CsaV3_1G034520 Cucumis sativus L. HOM05D006297 ORTHO05D007873 5.0e-44 182.6 345 41.4
Cfa011548 Carpinus fangiana HOM05D006297 ORTHO05D007873 1.2e-42 177.9 387 39.3
ClCG03G001300 Citrullus lanatus HOM05D006297 ORTHO05D007873 1.2e-42 177.9 355 42.0
Sopen06g032780 Solanum pennellii HOM05D006297 ORTHO05D007873 3.6e-42 176.4 339 41.6
Dinv42987 Davidia involucrata HOM05D006297 ORTHO05D007873 1.0e-41 174.9 341 40.8
DCAR_007431 Daucus carota HOM05D006297 ORTHO05D000003 1.4e-41 174.5 289 43.3
MELO3C020609.2 Cucumis melo HOM05D006297 ORTHO05D007873 2.3e-41 173.7 354 38.7
Solyc06g076370.4 Solanum lycopersicum HOM05D006297 ORTHO05D007873 1.5e-40 171.0 338 41.4
Potri.001G243900 Populus trichocarpa HOM05D006297 ORTHO05D007873 4.8e-39 166.0 421 35.4
CAN.G394.75 Capsicum annuum HOM05D006297 ORTHO05D007873 1.8e-38 164.1 351 38.2
MD11G1095400 Malus domestica HOM05D006297 ORTHO05D007873 2.4e-38 163.7 464 33.8
Prupe.6G070900 Prunus persica HOM05D006297 ORTHO05D007873 2.4e-38 163.7 405 35.1
Nitab4.5_0023946g0010 Nicotiana tabacum HOM05D006297 ORTHO05D007873 5.3e-38 162.5 329 38.6
Sed0011562 Sechium edule HOM05D006297 ORTHO05D007873 5.3e-38 162.5 332 39.2
Sed0017584 Sechium edule HOM05D006297 ORTHO05D007873 2.0e-37 160.6 324 37.7
TAR369G0304 Trochodendron aralioides HOM05D006297 ORTHO05D007873 2.6e-37 160.2 301 42.2
Duzib168G2114 Durio zibethinus HOM05D006297 ORTHO05D007873 3.4e-37 159.8 317 41.0
COL.COLO4_18571 Corchorus olitorius HOM05D006297 ORTHO05D007873 1.3e-36 157.9 309 38.8
Thecc.09G316300 Theobroma cacao HOM05D006297 ORTHO05D007873 6.5e-36 155.6 351 36.5
PGSC0003DMG400030329 Solanum tuberosum HOM05D006297 ORTHO05D007873 1.9e-35 154.1 239 46.0
A06p20810 Brassica napus HOM05D006297 ORTHO05D007873 4.2e-35 152.9 317 38.2
Ca_20618_v3 Cicer arietinum L. HOM05D006297 ORTHO05D007873 2.1e-34 150.6 434 32.5
Medtr4g064830 Medicago truncatula HOM05D006297 ORTHO05D007873 2.1e-34 150.6 436 33.0
THA.LOC104799430 Tarenaya hassleriana HOM05D006297 ORTHO05D007873 2.7e-34 150.2 341 34.6
Nn2g13426 Nelumbo nucifera HOM05D006297 ORTHO05D007873 4.7e-34 149.4 457 33.0
Lalb_Chr22g0352441 Lupinus albus HOM05D006297 ORTHO05D007873 7.9e-34 148.7 360 36.9
CANSAT54G0582 Cannabis sativa HOM05D006297 ORTHO05D007873 1.4e-33 147.9 439 33.5
Sc12g0001260 Simmondsia chinensis HOM05D006297 ORTHO05D007873 2.2e-31 140.6 388 32.2
BcaB05g23510 Brassica carinata HOM05D006297 ORTHO05D007873 3.7e-31 139.8 374 32.1
BcaC01g01889 Brassica carinata HOM05D006297 ORTHO05D007873 3.7e-31 139.8 337 35.9
C03p70940 Brassica napus HOM05D006297 ORTHO05D007873 3.7e-31 139.8 337 35.9
BolC3t19369H Brassica oleracea HOM05D006297 ORTHO05D007873 3.7e-31 139.8 337 35.9
Sp5g14970 Schrenkiella parvula HOM05D006297 ORTHO05D007873 6.3e-31 139.0 366 34.7
SGA_v2.0_scaffold54G19479 Striga asiatica HOM05D006297 ORTHO05D007873 8.2e-31 138.7 351 36.2
Duzib170G0989 Durio zibethinus HOM05D006297 ORTHO05D007873 3.1e-30 136.7 219 45.2
A01p26050 Brassica napus HOM05D006297 ORTHO05D007873 2.0e-29 134.0 376 37.2
Sabra16G0148100 Salix brachista HOM05D000026 ORTHO05D000094 2.6e-29 133.7 428 31.3
Thhalv10002567m.g Eutrema salsugineum HOM05D006297 ORTHO05D007873 1.0e-28 131.7 379 35.4
Aqoxy1G00878 Aquilegia oxysepala HOM05D006297 ORTHO05D007873 2.9e-28 130.2 417 33.1
BcaC09g49771 Brassica carinata HOM05D006297 ORTHO05D007873 2.9e-28 130.2 379 35.9
BraA01t02522Z Brassica rapa HOM05D006297 ORTHO05D007873 3.8e-28 129.8 364 36.3
CARHR154920 Cardamine hirsuta HOM05D006297 ORTHO05D007873 8.5e-28 128.6 373 31.6
Psat7g210960 Pisum sativum HOM05D006297 ORTHO05D007873 1.1e-27 128.3 451 30.8
Carub.0005s1301 Capsella rubella HOM05D006297 ORTHO05D007873 4.2e-27 126.3 393 35.9
RcHm_v2.0_Chr5g0066301 Rosa chinensis HOM05D006297 ORTHO05D007873 4.2e-27 126.3 520 29.2
TPR.G23574 Trifolium pratense HOM05D006297 ORTHO05D007873 5.5e-27 125.9 396 31.8
Glyma.11G136300 Glycine max HOM05D006297 ORTHO05D007873 7.2e-27 125.6 452 31.0
Lj3g0014453 Lotus japonicus HOM05D006297 ORTHO05D007873 1.6e-26 124.4 440 30.9
AT3G46750 Arabidopsis thaliana HOM05D006297 ORTHO05D007873 2.7e-26 123.6 386 34.5
BolC1t03251H Brassica oleracea HOM05D000026 ORTHO05D007873 2.7e-26 123.6 309 38.2
Glyma.12G060000 Glycine max HOM05D006297 ORTHO05D007873 4.7e-26 122.9 358 31.8
Gohir.D07G104500 Gossypium hirsutum HOM05D006297 ORTHO05D007873 1.0e-25 121.7 310 36.1
AL5G25730 Arabidopsis lyrata HOM05D006297 ORTHO05D007873 1.4e-25 121.3 279 34.4
Lalb_Chr01g0003491 Lupinus albus HOM05D006297 ORTHO05D007873 1.4e-25 121.3 390 32.3
Lalb_Chr03g0026471 Lupinus albus HOM05D006297 ORTHO05D007873 3.9e-25 119.8 398 31.9
DCAR_018924 Daucus carota HOM05D006297 ORTHO05D007873 6.7e-25 119.0 312 34.6
Aa31LG4G15680 Aethionema arabicum HOM05D006297 ORTHO05D007873 2.6e-24 117.1 285 34.7
Phvul.011G061900 Phaseolus vulgaris HOM05D006297 ORTHO05D007873 4.4e-24 116.3 369 30.1
VMungo1127G1804 Vigna mungo HOM05D006297 ORTHO05D007873 2.8e-23 113.6 370 30.0
unitig_899.g15423 Utricularia gibba HOM05D006297 ORTHO05D007873 1.1e-22 111.7 314 34.1
PSO339G0783 Papaver somniferum HOM05D006297 ORTHO05D007873 1.4e-22 111.3 181 45.9
Glyma.15G035500 Glycine max HOM05D006297 ORTHO05D007873 4.1e-22 109.8 259 34.7
SalBow6G6944 Salvia bowleyana HOM05D006297 ORTHO05D007873 4.1e-22 109.8 494 30.6
Dinv17042 Davidia involucrata HOM05D006297 ORTHO05D007873 7.0e-22 109.0 128 52.3
Dinv17043 Davidia involucrata HOM05D006297 ORTHO05D007873 7.0e-22 109.0 136 54.4
Dinv43111 Davidia involucrata HOM05D006297 ORTHO05D007873 7.0e-22 109.0 136 54.4
Dinv43112 Davidia involucrata HOM05D006297 ORTHO05D007873 7.0e-22 109.0 128 52.3
Lj3g0003832 Lotus japonicus HOM05D006297 ORTHO05D007873 1.2e-21 108.2 316 31.3
PSO513G0159 Papaver somniferum HOM05D006297 ORTHO05D007873 2.6e-21 107.1 410 33.4
MBI05_g35633_MAGBIO Magnolia biondii HOM05D006297 ORTHO05D007873 4.5e-21 106.3 269 35.3
Nn2g11187 Nelumbo nucifera HOM05D006297 ORTHO05D007873 7.7e-21 105.5 271 37.6
Glyma.13G338800 Glycine max HOM05D006297 ORTHO05D007873 1.0e-20 105.1 284 32.0
VMungo1080G0409 Vigna mungo HOM05D006297 ORTHO05D007873 1.3e-20 104.8 421 31.6
FvH4_3g36910 Fragaria vesca HOM05D006297 ORTHO05D007873 1.7e-20 104.4 572 26.4
TPR.G6873 Trifolium pratense HOM05D006297 ORTHO05D007873 6.5e-20 102.4 342 33.3
Phvul.L008043 Phaseolus vulgaris HOM05D006297 ORTHO05D007873 1.5e-19 101.3 268 33.6
FAN11G1892 Fragaria x ananassa HOM05D006297 ORTHO05D007873 2.5e-19 100.5 572 28.7
FAN16G1466 Fragaria x ananassa HOM05D006297 ORTHO05D007873 5.5e-19 99.4 549 31.7
Lsat_1_v5_gn_8_72960 Lactuca sativa HOM05D006297 ORTHO05D007873 1.6e-18 97.8 315 29.8
CiPaw.14G065800 Carya illinoinensis HOM05D006297 ORTHO05D007873 2.7e-18 97.1 346 29.2
Ca_01304_v3 Cicer arietinum L. HOM05D006297 ORTHO05D007873 6.7e-17 92.4 331 30.5
Hma1.2p1_0757F.1_g213410 Hydrangea macrophylla HOM05D006297 ORTHO05D007873 8.8e-17 92.0 119 57.1
ATR0559G346 Amborella trichopoda HOM05D006297 ORTHO05D007873 1.2e-16 91.7 249 34.1
FAN21G2693 Fragaria x ananassa HOM05D006297 ORTHO05D007873 2.0e-16 90.9 572 29.0
C01p33140 Brassica napus HOM05D006297 ORTHO05D007873 2.6e-16 90.5 275 37.1
arahy.Tifrunner.gnm1.ann1.NT76K4 Arachis hypogaea HOM05D006297 ORTHO05D007873 3.3e-16 90.1 380 27.9
Medtr2g097710 Medicago truncatula HOM05D006297 ORTHO05D007873 3.3e-16 90.1 335 30.1
Psat5g118640 Pisum sativum HOM05D006297 ORTHO05D007873 2.8e-15 87.0 171 40.4
arahy.Tifrunner.gnm1.ann1.FG1CRE Arachis hypogaea HOM05D006297 ORTHO05D007873 3.7e-15 86.7 380 27.6
FAN25G2608 Fragaria x ananassa HOM05D006297 ORTHO05D007873 6.3e-15 85.9 573 29.8
HanXRQChr05g0135261 Helianthus annuus HOM05D006297 ORTHO05D007873 8.2e-15 85.5 330 27.9
BcaB02g10710 Brassica carinata HOM05D006297 ORTHO05D007873 7.0e-14 82.4 238 29.8
arahy.Tifrunner.gnm1.ann1.19P32Y Arachis hypogaea HOM05D006297 ORTHO05D007873 9.1e-14 82.0 109 47.7
arahy.Tifrunner.gnm1.ann1.2MBI16 Arachis hypogaea HOM05D006297 ORTHO05D007873 9.1e-14 82.0 109 47.7
AUR62001745 Chenopodium quinoa HOM05D006297 ORTHO05D007873 9.1e-14 82.0 179 35.8
Lalb_Chr24g0397191 Lupinus albus HOM05D006297 ORTHO05D007873 2.7e-13 80.5 162 37.7
SalBow1G2607 Salvia bowleyana HOM05D006297 ORTHO05D007873 3.5e-13 80.1 327 27.8
MBI14_g08019_MAGBIO Magnolia biondii HOM05D006297 ORTHO05D007873 1.6e-10 71.2 263 30.8
Hund04923 Selenicereus undatus HOM05D006297 ORTHO05D007873 1.0e-09 68.6 185 37.3
EL10Ac7g16061 Beta vulgaris HOM05D006297 ORTHO05D007873 1.8e-09 67.8 152 38.2
AUR62020026 Chenopodium quinoa HOM05D006297 ORTHO05D007873 3.0e-09 67.0 390 26.2
Ah.08g219890 Amaranthus hybridus HOM05D006297 ORTHO05D007873 9.8e-08 62.0 94 48.9
Lsat_1_v5_gn_5_169521 Lactuca sativa HOM05D006297 ORTHO05D007873 1.7e-07 61.2 307 29.3
HanXRQChr11g0340671 Helianthus annuus HOM05D006297 ORTHO05D007873 3.1e-06 57.0 68 50.0


User provided reference genes

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