Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015826 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.6e-32 142.1 71 100.0
CSS0015841 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 7.0e-28 126.7 69 88.4
CSS0046072 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 7.0e-28 126.7 69 88.4
CSS0013769 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 7.8e-27 123.2 69 85.5
CSS0050078 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.0e-26 122.9 69 87.0
Rhsim01G0080600 Rhododendron simsii HOM05D000002 ORTHO05D000001 1.7e-26 122.1 69 85.5
RhsimUnG0178000 Rhododendron simsii HOM05D000002 ORTHO05D000001 1.7e-26 122.1 69 85.5
Rhsim03G0172600 Rhododendron simsii HOM05D000002 ORTHO05D000001 2.3e-26 121.7 69 85.5
Rhsim02G0093500 Rhododendron simsii HOM05D000002 ORTHO05D000001 3.9e-26 120.9 69 84.1
Rhsim08G0049500 Rhododendron simsii HOM05D004871 ORTHO05D005755 3.9e-26 120.9 69 84.1
Rhsim09G0033700 Rhododendron simsii HOM05D000002 ORTHO05D000001 3.9e-26 120.9 69 84.1
RhsimUnG0182300 Rhododendron simsii HOM05D000002 ORTHO05D000001 3.9e-26 120.9 69 84.1
CSS0048686 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 7.3e-25 116.7 67 85.1
CSS0041440 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.6e-24 114.4 69 84.1
CSS0025880 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.8e-23 112.1 67 82.1
Atru.chr5.2716 Acer truncatum HOM05D000002 ORTHO05D000001 4.0e-23 110.9 69 79.7
Sopen05g010210 Solanum pennellii HOM05D000002 ORTHO05D000001 4.0e-23 110.9 68 77.9
Sopen10g016240 Solanum pennellii HOM05D000002 ORTHO05D000001 4.0e-23 110.9 68 77.9
Sopen10g031560 Solanum pennellii HOM05D000002 ORTHO05D000001 4.0e-23 110.9 68 77.9
Sopen11g010630 Solanum pennellii HOM05D000002 ORTHO05D000001 4.0e-23 110.9 68 77.9
CANSAT01G2627 Cannabis sativa HOM05D000002 ORTHO05D000001 9.8e-22 106.3 69 72.5
Nn1g04729 Nelumbo nucifera HOM05D000002 ORTHO05D000001 2.2e-21 105.1 67 79.1
Sopen01g009120 Solanum pennellii HOM05D000002 ORTHO05D000001 2.2e-21 105.1 68 79.4
Hma1.2p1_0820F.1_g223995 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 2.9e-21 104.8 68 76.5
Hma1.2p1_0820F.1_g224020 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 2.9e-21 104.8 68 76.5
Ciclev10013956m.g Citrus clementina HOM05D000002 ORTHO05D000001 4.9e-21 104.0 68 76.5
Nn1g06669 Nelumbo nucifera HOM05D000002 ORTHO05D000001 6.4e-21 103.6 69 73.9
Atru.chr10.1094 Acer truncatum HOM05D000002 ORTHO05D000001 2.4e-20 101.7 68 72.1
EL10Ac8g19578 Beta vulgaris HOM05D000002 ORTHO05D000001 3.2e-20 101.3 68 70.6
Hma1.2p1_0414F.1_g147800 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 3.2e-20 101.3 68 70.6
Nn1g06976 Nelumbo nucifera HOM05D000002 ORTHO05D000001 4.1e-20 100.9 68 72.1
Sopen01g017420 Solanum pennellii HOM05D000002 ORTHO05D000001 4.1e-20 100.9 68 70.6
Sopen05g010950 Solanum pennellii HOM05D000002 ORTHO05D000001 4.1e-20 100.9 68 70.6
Sopen05g018370 Solanum pennellii HOM05D000002 ORTHO05D000001 4.1e-20 100.9 68 70.6
Sopen06g017010 Solanum pennellii HOM05D000002 ORTHO05D000001 4.1e-20 100.9 68 70.6
Nn2g10460 Nelumbo nucifera HOM05D000002 ORTHO05D000001 7.0e-20 100.1 68 70.6
Nn2g13324 Nelumbo nucifera HOM05D000002 ORTHO05D000001 7.0e-20 100.1 69 69.6
Sopen01g013480 Solanum pennellii HOM05D000002 ORTHO05D000001 7.0e-20 100.1 68 76.5
Sopen03g025100 Solanum pennellii HOM05D000002 ORTHO05D000001 7.0e-20 100.1 68 76.5
Nn1g07710 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.2e-19 99.4 69 72.5
Sopen10g021260 Solanum pennellii HOM05D000002 ORTHO05D000001 1.2e-19 99.4 68 75.0
Sopen11g022020 Solanum pennellii HOM05D000002 ORTHO05D000001 1.6e-19 99.0 68 70.6
CSS0024481 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.5e-19 97.8 68 70.6
Manes.09G095934 Manihot esculenta HOM05D000002 ORTHO05D000001 4.6e-19 97.4 68 70.6
Sopen01g011890 Solanum pennellii HOM05D000002 ORTHO05D000001 4.6e-19 97.4 68 66.2
Nn2g12419 Nelumbo nucifera HOM05D000002 ORTHO05D000001 7.8e-19 96.7 69 71.0
Nn4g26209 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.0e-18 96.3 68 75.0
Sopen05g007860 Solanum pennellii HOM05D000002 ORTHO05D000001 1.0e-18 96.3 68 67.6
Sopen07g005890 Solanum pennellii HOM05D000002 ORTHO05D000001 1.3e-18 95.9 68 69.1
RcHm_v2.0_Chr4g0409151 Rosa chinensis HOM05D000002 ORTHO05D000001 1.7e-18 95.5 69 66.7
Hma1.2p1_0171F.1_g075850 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 2.3e-18 95.1 68 69.1
Nn6g34560 Nelumbo nucifera HOM05D000002 ORTHO05D000001 2.3e-18 95.1 69 69.6
Nn6g34561 Nelumbo nucifera HOM05D000002 ORTHO05D000001 2.3e-18 95.1 69 69.6
Atru.chr4.1540 Acer truncatum HOM05D000002 ORTHO05D000001 3.0e-18 94.7 68 69.1
Hma1.2p1_2049F.1_g312480 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 3.0e-18 94.7 68 67.6
Nn1g04728 Nelumbo nucifera HOM05D000002 ORTHO05D000001 3.0e-18 94.7 61 78.7
Sopen01g013490 Solanum pennellii HOM05D000002 ORTHO05D000001 3.0e-18 94.7 68 70.6
CSS0017329 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 5.1e-18 94.0 68 69.1
CSS0022948 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.6e-18 93.6 57 80.7
CSS0039281 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.6e-18 93.6 68 66.2
Hma1.2p1_0176F.1_g077340 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 6.6e-18 93.6 68 66.2
Nn4g26285 Nelumbo nucifera HOM05D000002 ORTHO05D000001 6.6e-18 93.6 69 66.7
Sopen01g013110 Solanum pennellii HOM05D000002 ORTHO05D000001 6.6e-18 93.6 68 70.6
CSS0042530 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 8.6e-18 93.2 68 66.2
Nn5g26837 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.1e-17 92.8 68 69.1
CSS0017873 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.9e-17 92.0 68 67.6
CSS0044856 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.9e-17 92.0 68 67.6
Lalb_Chr23g0274091 Lupinus albus HOM05D000002 ORTHO05D000001 1.9e-17 92.0 68 69.1
Nn7g37206 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.9e-17 92.0 68 66.2
Sopen07g012350 Solanum pennellii HOM05D000002 ORTHO05D000001 1.9e-17 92.0 68 67.6
CSS0045643 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.5e-17 91.7 68 64.7
CSS0010947 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.3e-17 91.3 68 66.2
Manes.10G112229 Manihot esculenta HOM05D000002 ORTHO05D000001 3.3e-17 91.3 68 63.2
Nn4g24384 Nelumbo nucifera HOM05D000002 ORTHO05D000001 3.3e-17 91.3 69 68.1
Sopen03g020180 Solanum pennellii HOM05D000002 ORTHO05D000001 3.3e-17 91.3 68 67.6
CSS0040082 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 5.6e-17 90.5 68 69.1
CSS0045479 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 5.6e-17 90.5 68 63.2
RcHm_v2.0_Chr2g0154461 Rosa chinensis HOM05D000002 ORTHO05D000001 5.6e-17 90.5 69 60.9
RcHm_v2.0_Chr7g0198271 Rosa chinensis HOM05D000002 ORTHO05D000001 5.6e-17 90.5 69 60.9
CSS0020765 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 9.5e-17 89.7 68 64.7
CSS0047274 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 9.5e-17 89.7 68 66.2
FvH4_1g02351 Fragaria vesca HOM05D000002 ORTHO05D000001 1.2e-16 89.4 68 66.2
QL11p047249 Quercus lobata HOM05D000002 ORTHO05D000001 1.2e-16 89.4 69 62.3
Sopen10g012380 Solanum pennellii HOM05D000002 ORTHO05D000001 1.2e-16 89.4 68 66.2
CSS0000038 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.6e-16 89.0 70 62.9
CSS0012950 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.6e-16 89.0 68 67.6
SHI52580 Sapria himalayana HOM05D000002 ORTHO05D000001 2.1e-16 88.6 68 64.7
SHI53128 Sapria himalayana HOM05D000002 ORTHO05D000001 2.1e-16 88.6 68 64.7
CSS0003655 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.6e-16 87.8 68 63.2
CSS0008175 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.6e-16 87.8 66 65.2
Hma1.2p1_0774F.1_g216300 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 3.6e-16 87.8 69 62.3
CSS0040283 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.7e-16 87.4 69 65.2
Hma1.2p1_1768F.1_g301590 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 6.2e-16 87.0 69 66.7
Nn2g14659 Nelumbo nucifera HOM05D000002 ORTHO05D000001 6.2e-16 87.0 69 60.9
Hma1.2p1_1498F.1_g287120 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 8.1e-16 86.7 69 62.3
Nn5g30083 Nelumbo nucifera HOM05D000002 ORTHO05D000001 8.1e-16 86.7 68 63.2
CSS0005068 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.1e-15 86.3 68 63.2
CSS0037972 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.1e-15 86.3 68 61.8
Ciclev10013585m.g Citrus clementina HOM05D000002 ORTHO05D000001 1.4e-15 85.9 67 62.7
ECA234G4791 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.3e-15 85.1 68 60.3
ECA240G3412 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.3e-15 85.1 68 55.9
Hma1.2p1_1719F.1_g299230 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 2.3e-15 85.1 69 65.2
Rhsim13G0212300 Rhododendron simsii HOM05D000002 ORTHO05D000001 2.3e-15 85.1 68 63.2
CSS0002244 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.0e-15 84.3 69 62.3
Hma1.2p1_0184F.1_g081330 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 4.0e-15 84.3 69 60.9
CSS0021106 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 5.2e-15 84.0 68 60.3
CSS0016567 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.8e-15 83.6 69 60.9
MD01G1101100 Malus domestica HOM05D000002 ORTHO05D000001 6.8e-15 83.6 68 63.2
CSS0019043 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.2e-14 82.8 69 63.8
FvH4_6g43841 Fragaria vesca HOM05D000002 ORTHO05D000001 1.2e-14 82.8 68 61.8
ECA238G0437 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.5e-14 82.4 68 58.8
ECA248G1474 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.0e-14 82.0 68 54.4
BolC4t26198H Brassica oleracea HOM05D000002 ORTHO05D000001 2.6e-14 81.6 68 55.9
MSTRG.3250 Avicennia marina HOM05D000002 ORTHO05D000001 3.4e-14 81.3 70 58.6
ECA234G3833 Erigeron canadensis HOM05D000002 ORTHO05D000001 5.8e-14 80.5 68 55.9
Nn1g02421 Nelumbo nucifera HOM05D000002 ORTHO05D000001 9.9e-14 79.7 68 61.8
ECA247G3331 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.7e-13 79.0 68 54.4
Hma1.2p1_0764F.1_g215020 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 2.9e-13 78.2 56 71.4
Nn1g02200 Nelumbo nucifera HOM05D000002 ORTHO05D000001 3.7e-13 77.8 68 55.9
CSS0044932 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.4e-13 77.0 65 60.0
CAN.G1438.1 Capsicum annuum HOM05D000002 ORTHO05D000001 8.3e-13 76.6 68 55.9
RcHm_v2.0_Chr1g0330731 Rosa chinensis HOM05D000002 ORTHO05D000001 8.3e-13 76.6 68 57.4
ECA232G4093 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.4e-12 75.9 68 52.9
ECA246G4670 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.4e-12 75.9 68 54.4
ECA240G2252 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.2e-12 74.7 61 59.0
PSO541G3208 Papaver somniferum HOM05D000002 ORTHO05D000001 3.2e-12 74.7 71 56.3
Sopen12g017790 Solanum pennellii HOM05D000002 ORTHO05D000001 4.1e-12 74.3 52 71.2
CSS0015467 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 5.4e-12 73.9 66 57.6
VMungo1309G0289 Vigna mungo HOM05D002892 ORTHO05D003224 5.4e-12 73.9 69 53.6
ECA233G2170 Erigeron canadensis HOM05D000002 ORTHO05D000001 7.1e-12 73.6 68 52.9
Nn2g15368 Nelumbo nucifera HOM05D000002 ORTHO05D000001 7.1e-12 73.6 69 59.4
CSS0016553 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 9.2e-12 73.2 38 94.7
CSS0024524 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 9.2e-12 73.2 38 94.7
RcHm_v2.0_Chr7g0237911 Rosa chinensis HOM05D000002 ORTHO05D000001 9.2e-12 73.2 68 54.4
CSS0046990 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.2e-11 72.8 68 58.8
ECA232G0373 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.2e-11 72.8 68 52.9
ECA240G1585 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.6e-11 72.4 68 51.5
ECA248G2341 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.1e-11 72.0 68 50.0
Nn8g41156 Nelumbo nucifera HOM05D000002 ORTHO05D000001 2.1e-11 72.0 52 71.2
ECA246G0354 Erigeron canadensis HOM05D000230 ORTHO05D000176 6.0e-11 70.5 68 50.0
Nn8g40241 Nelumbo nucifera HOM05D000002 ORTHO05D000001 6.0e-11 70.5 68 58.8
ECA248G1333 Erigeron canadensis HOM05D000002 ORTHO05D000001 7.8e-11 70.1 68 50.0
FvH4_7g13272 Fragaria vesca HOM05D000002 ORTHO05D000001 1.0e-10 69.7 68 50.0
Sopen12g010580 Solanum pennellii HOM05D000014 ORTHO05D000093 1.3e-10 69.3 48 72.9
CSS0008047 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.7e-10 68.9 54 66.7
CSS0001792 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.3e-10 68.6 66 54.5
Sopen02g009840 Solanum pennellii HOM05D000002 ORTHO05D000001 2.3e-10 68.6 68 48.5
Sopen06g007920 Solanum pennellii HOM05D000002 ORTHO05D000001 2.3e-10 68.6 68 48.5
Sopen09g029100 Solanum pennellii HOM05D000002 ORTHO05D000001 2.3e-10 68.6 68 48.5
CSS0034655 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.0e-10 68.2 68 57.4
EL10Ac9g20778 Beta vulgaris HOM05D000002 ORTHO05D000001 3.9e-10 67.8 68 48.5
ECA246G0479 Erigeron canadensis HOM05D000002 ORTHO05D000001 5.1e-10 67.4 68 52.9
Sopen12g026370 Solanum pennellii HOM05D000002 ORTHO05D000001 5.1e-10 67.4 68 47.1
ECA238G2859 Erigeron canadensis HOM05D000002 ORTHO05D000001 6.6e-10 67.0 68 47.1
Sopen01g020600 Solanum pennellii HOM05D000002 ORTHO05D000001 8.6e-10 66.6 68 47.1
Atru.chr4.75 Acer truncatum HOM05D000002 ORTHO05D000001 1.5e-09 65.9 44 72.7
ECA234G4446 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.9e-09 65.5 68 45.6
ECA233G1773 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.5e-09 65.1 68 45.6
Sopen01g007590 Solanum pennellii HOM05D000002 ORTHO05D000001 3.3e-09 64.7 68 47.1
C03p36830 Brassica napus HOM05D000002 ORTHO05D000001 4.3e-09 64.3 68 47.1
ECA234G3983 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.3e-09 64.3 68 42.6
VMungo0331G0698 Vigna mungo HOM05D000092 ORTHO05D000042 7.3e-09 63.5 54 57.4
Sopen11g010290 Solanum pennellii HOM05D000002 ORTHO05D000001 9.5e-09 63.2 44 70.5
CSS0018129 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.1e-08 62.0 45 71.1
FvH4_1g18381 Fragaria vesca HOM05D000002 ORTHO05D000001 2.1e-08 62.0 42 76.2
Medtr1g056260 Medicago truncatula HOM05D000002 ORTHO05D000001 2.1e-08 62.0 66 51.5
CSS0014796 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.6e-08 61.2 49 65.3
Lalb_Chr02g0155271 Lupinus albus HOM05D000002 ORTHO05D000001 4.7e-08 60.8 46 60.9
SHI05323 Sapria himalayana HOM05D000002 ORTHO05D000001 6.2e-08 60.5 48 64.6
EL10Ac6g13816 Beta vulgaris HOM05D000002 ORTHO05D000001 1.4e-07 59.3 68 50.0
Psat4g144840 Pisum sativum HOM05D000002 ORTHO05D000001 2.4e-07 58.5 69 40.6
CSS0013581 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.8e-07 57.0 57 52.6
CSS0014778 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.8e-07 57.0 69 50.7
CSS0046044 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.2e-06 56.2 68 42.6
QL03p066067 Quercus lobata HOM05D000002 ORTHO05D000001 1.2e-06 56.2 50 52.0
CSS0047943 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.0e-06 55.5 43 65.1
RcHm_v2.0_Chr5g0056061 Rosa chinensis HOM05D000002 ORTHO05D000001 2.0e-06 55.5 54 55.6
CSS0043384 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.4e-06 54.7 57 50.9
Ciclev10024469m.g Citrus clementina HOM05D000002 ORTHO05D000001 3.4e-06 54.7 35 71.4
QL09p034601 Quercus lobata HOM05D000002 ORTHO05D000001 3.4e-06 54.7 68 42.6
FvH4_3g12332 Fragaria vesca HOM05D000002 ORTHO05D000001 4.4e-06 54.3 89 36.0
FvH4_4g30902 Fragaria vesca HOM05D000002 ORTHO05D000001 4.4e-06 54.3 89 36.0


User provided reference genes

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