Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015821 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 5.2e-96 354.4 178 100.0
CSS0021517 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 5.2e-96 354.4 178 100.0
CSS0002613 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.1e-93 346.7 178 97.8
vmacro21541 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 3.3e-82 308.5 178 83.7
Actinidia23262 Actinidia chinensis HOM05D004405 ORTHO05D005613 6.2e-81 304.3 176 84.7
CSS0003579 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.8e-80 302.8 163 93.3
Dinv35974 Davidia involucrata HOM05D004405 ORTHO05D005613 5.8e-79 297.7 178 83.7
Hma1.2p1_0982F.1_g243850 Hydrangea macrophylla HOM05D004405 ORTHO05D005613 2.7e-76 288.9 178 79.8
Rhsim06G0048000 Rhododendron simsii HOM05D000235 ORTHO05D000147 3.5e-76 288.5 172 81.4
TAR381G0414 Trochodendron aralioides HOM05D004405 ORTHO05D005613 7.8e-76 287.3 177 78.0
Manes.18G032800 Manihot esculenta HOM05D004405 ORTHO05D005613 3.0e-75 285.4 178 79.8
Thecc.08G011300 Theobroma cacao HOM05D004405 ORTHO05D005613 6.6e-75 284.3 176 78.4
CSS0039327 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 3.3e-74 282.0 147 95.9
Lj5C9T2 Lonicera japonica HOM05D004405 ORTHO05D005613 7.3e-74 280.8 178 78.1
Lj5C589T2 Lonicera japonica HOM05D004405 ORTHO05D005613 2.1e-73 279.3 178 77.5
Lj4A775T68 Lonicera japonica HOM05D004405 ORTHO05D005613 3.6e-73 278.5 178 77.0
GSVIVG01009527001 Vitis vinifera HOM05D004405 ORTHO05D005613 4.7e-73 278.1 177 76.8
Prupe.1G439200 Prunus persica HOM05D004405 ORTHO05D005613 3.1e-72 275.4 176 73.3
Eucgr.F00243 Eucalyptus grandis HOM05D004405 ORTHO05D005613 8.9e-72 273.9 178 71.9
Nn1g05838 Nelumbo nucifera HOM05D004405 ORTHO05D005613 1.5e-71 273.1 177 75.7
Duzib093G0211 Durio zibethinus HOM05D004405 ORTHO05D005613 2.0e-71 272.7 178 74.7
vmacro05293 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 3.4e-71 271.9 160 81.2
Potri.014G032400 Populus trichocarpa HOM05D004405 ORTHO05D005613 4.4e-71 271.6 178 73.6
TWI36G1713 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 4.4e-71 271.6 178 73.6
Nn5g30223 Nelumbo nucifera HOM05D004405 ORTHO05D005613 9.9e-71 270.4 176 76.7
Sabra14G0022800 Salix brachista HOM05D004405 ORTHO05D005613 9.9e-71 270.4 178 73.0
Cc10_g04350 Coffea canephora HOM05D004405 ORTHO05D005613 1.7e-70 269.6 178 74.2
Gohir.A06G016900 Gossypium hirsutum HOM05D004405 ORTHO05D005613 4.9e-70 268.1 175 74.3
Gohir.D06G015000 Gossypium hirsutum HOM05D004405 ORTHO05D005613 4.9e-70 268.1 175 74.3
Gorai.010G017800 Gossypium raimondii HOM05D004405 ORTHO05D005613 4.9e-70 268.1 175 74.3
Lalb_Chr14g0368801 Lupinus albus HOM05D004405 ORTHO05D005613 8.4e-70 267.3 177 70.6
CSS0018141 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.1e-69 266.9 164 85.4
TWI36G1445 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 1.1e-69 266.9 178 73.0
Aa31sc924G10 Aethionema arabicum HOM05D004405 ORTHO05D005613 1.4e-69 266.5 178 73.6
THA.LOC104813205 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 1.4e-69 266.5 176 73.9
MD15G1085100 Malus domestica HOM05D004405 ORTHO05D005613 2.4e-69 265.8 176 70.5
Duzib116G0463 Durio zibethinus HOM05D004405 ORTHO05D005613 3.2e-69 265.4 174 74.1
Nitab4.5_0000686g0020 Nicotiana tabacum HOM05D004405 ORTHO05D005613 3.2e-69 265.4 178 72.5
QL02p005410 Quercus lobata HOM05D004405 ORTHO05D005613 3.2e-69 265.4 177 73.4
Ca_13303_v3 Cicer arietinum L. HOM05D004405 ORTHO05D005613 4.1e-69 265.0 178 70.8
arahy.Tifrunner.gnm1.ann1.G214E9 Arachis hypogaea HOM05D004405 ORTHO05D005613 5.4e-69 264.6 178 70.8
arahy.Tifrunner.gnm1.ann1.P974E5 Arachis hypogaea HOM05D004405 ORTHO05D005613 5.4e-69 264.6 178 70.8
BcaB04g17525 Brassica carinata HOM05D004405 ORTHO05D005613 5.4e-69 264.6 178 73.0
THA.LOC104806948 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 5.4e-69 264.6 178 73.0
Lalb_Chr24g0399241 Lupinus albus HOM05D004405 ORTHO05D005613 9.2e-69 263.8 178 70.2
CAN.G1422.6 Capsicum annuum HOM05D004405 ORTHO05D005613 1.2e-68 263.5 178 70.8
FAN15G0428 Fragaria x ananassa HOM05D004405 ORTHO05D005613 1.6e-68 263.1 177 70.6
Nitab4.5_0001101g0090 Nicotiana tabacum HOM05D004405 ORTHO05D005613 1.6e-68 263.1 178 71.3
Glyma.17G243600 Glycine max HOM05D004405 ORTHO05D005613 2.1e-68 262.7 178 69.7
Glyma.14G081700 Glycine max HOM05D004405 ORTHO05D005613 2.7e-68 262.3 178 69.7
Solyc04g079180.3 Solanum lycopersicum HOM05D004405 ORTHO05D005613 2.7e-68 262.3 178 71.9
BcaC07g37214 Brassica carinata HOM05D004405 ORTHO05D005613 3.5e-68 261.9 178 71.9
C08p06290 Brassica napus HOM05D004405 ORTHO05D005613 3.5e-68 261.9 178 71.9
BolC8t47475H Brassica oleracea HOM05D004405 ORTHO05D005613 3.5e-68 261.9 178 71.9
Medtr1g019810 Medicago truncatula HOM05D004405 ORTHO05D005613 3.5e-68 261.9 176 71.0
FvH4_2g34650 Fragaria vesca HOM05D004405 ORTHO05D005613 4.6e-68 261.5 177 70.1
FAN27G0612 Fragaria x ananassa HOM05D004405 ORTHO05D005613 4.6e-68 261.5 177 70.1
Peaxi162Scf00528g00045 Petunia axillaris HOM05D004405 ORTHO05D005613 4.6e-68 261.5 178 70.8
PGR083G0008 Punica granatum HOM05D004405 ORTHO05D005613 4.6e-68 261.5 178 69.1
FAN20G0125 Fragaria x ananassa HOM05D004405 ORTHO05D005613 6.0e-68 261.2 177 70.1
MD08G1103900 Malus domestica HOM05D004405 ORTHO05D005613 6.0e-68 261.2 176 70.5
A08p05640 Brassica napus HOM05D004405 ORTHO05D005613 1.0e-67 260.4 178 71.3
BraA08t32566Z Brassica rapa HOM05D004405 ORTHO05D005613 1.0e-67 260.4 178 71.3
Thhalv10011700m.g Eutrema salsugineum HOM05D004405 ORTHO05D005613 1.0e-67 260.4 178 71.3
TPR.G13673 Trifolium pratense HOM05D004405 ORTHO05D005613 1.0e-67 260.4 176 70.5
Aa31sc213G20 Aethionema arabicum HOM05D004405 ORTHO05D005613 1.3e-67 260.0 178 71.3
CiPaw.15G061900 Carya illinoinensis HOM05D004405 ORTHO05D005613 1.3e-67 260.0 178 71.9
COL.COLO4_26473 Corchorus olitorius HOM05D004405 ORTHO05D005613 1.3e-67 260.0 178 71.9
PGSC0003DMG400008025 Solanum tuberosum HOM05D004405 ORTHO05D005613 1.3e-67 260.0 178 71.9
RcHm_v2.0_Chr6g0307421 Rosa chinensis HOM05D004405 ORTHO05D005613 1.7e-67 259.6 177 70.1
Aqoxy5G01271 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 3.0e-67 258.8 176 70.5
Lj5g0011335 Lotus japonicus HOM05D004405 ORTHO05D005613 3.0e-67 258.8 178 67.4
Sopen04g032790 Solanum pennellii HOM05D004405 ORTHO05D005613 3.0e-67 258.8 178 70.8
AT1G47420 Arabidopsis thaliana HOM05D004405 ORTHO05D005613 3.9e-67 258.5 178 70.2
CARHR037030 Cardamine hirsuta HOM05D004405 ORTHO05D005613 3.9e-67 258.5 178 70.8
Haze_17546 Corylus avellana HOM05D004405 ORTHO05D005613 3.9e-67 258.5 178 70.8
Haze_17555 Corylus avellana HOM05D004405 ORTHO05D005613 3.9e-67 258.5 178 70.8
Cfa018524 Carpinus fangiana HOM05D004405 ORTHO05D005613 6.6e-67 257.7 176 71.0
Sp1g34510 Schrenkiella parvula HOM05D004405 ORTHO05D005613 8.6e-67 257.3 178 70.8
SpUn0102_0010 Schrenkiella parvula HOM05D004405 ORTHO05D005613 8.6e-67 257.3 178 70.8
AL1G53710 Arabidopsis lyrata HOM05D004405 ORTHO05D005613 1.1e-66 256.9 178 69.7
A10p06390 Brassica napus HOM05D004405 ORTHO05D005613 1.5e-66 256.5 178 70.8
BcaC08g42948 Brassica carinata HOM05D004405 ORTHO05D005613 2.5e-66 255.8 178 70.8
C06p01920 Brassica napus HOM05D004405 ORTHO05D005613 2.5e-66 255.8 178 70.8
ATR0824G121 Amborella trichopoda HOM05D004405 ORTHO05D005613 4.3e-66 255.0 178 70.8
BcaB07g33838 Brassica carinata HOM05D004405 ORTHO05D005613 4.3e-66 255.0 178 70.2
Carub.0001s3623 Capsella rubella HOM05D004405 ORTHO05D005613 7.3e-66 254.2 178 70.2
HanXRQChr04g0103551 Helianthus annuus HOM05D004405 ORTHO05D005613 7.3e-66 254.2 178 68.5
Phvul.001G020600 Phaseolus vulgaris HOM05D004405 ORTHO05D005613 7.3e-66 254.2 178 67.4
VMungo0647G1810 Vigna mungo HOM05D004405 ORTHO05D005613 7.3e-66 254.2 178 66.9
Nitab4.5_0000453g0210 Nicotiana tabacum HOM05D004405 ORTHO05D005613 9.6e-66 253.8 178 69.1
Sopen12g030800 Solanum pennellii HOM05D004405 ORTHO05D005613 9.6e-66 253.8 177 70.6
PGSC0003DMG400015445 Solanum tuberosum HOM05D004405 ORTHO05D005613 9.6e-66 253.8 177 70.6
Psat6g012760 Pisum sativum HOM05D004405 ORTHO05D005613 2.1e-65 252.7 176 68.2
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 2.8e-65 252.3 166 74.7
Peaxi162Scf00064g00017 Petunia axillaris HOM05D004405 ORTHO05D005613 2.8e-65 252.3 178 69.1
Solyc12g088900.2 Solanum lycopersicum HOM05D004405 ORTHO05D005613 2.8e-65 252.3 177 70.6
MBI06_g04501_MAGBIO Magnolia biondii HOM05D004405 ORTHO05D005613 4.7e-65 251.5 175 70.3
CiPaw.16G046000 Carya illinoinensis HOM05D004405 ORTHO05D005613 8.1e-65 250.8 162 75.3
MSTRG.4418 Avicennia marina HOM05D004405 ORTHO05D005613 1.1e-64 250.4 175 69.7
SGA_v2.0_scaffold114G31897 Striga asiatica HOM05D004405 ORTHO05D005613 1.4e-64 250.0 178 68.5
ECA247G2210 Erigeron canadensis HOM05D004405 ORTHO05D005613 1.8e-64 249.6 178 66.3
DCAR_015085 Daucus carota HOM05D004405 ORTHO05D005613 3.1e-64 248.8 178 68.5
Atru.chr7.31 Acer truncatum HOM05D004405 ORTHO05D005613 4.0e-64 248.4 178 69.1
Ciclev10002311m.g Citrus clementina HOM05D004405 ORTHO05D005613 5.2e-64 248.1 178 68.0
CSS0001980 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 6.9e-64 247.7 132 92.4
PSO063G4876 Papaver somniferum HOM05D004405 ORTHO05D005613 6.9e-64 247.7 177 66.7
PSO782G1589 Papaver somniferum HOM05D004405 ORTHO05D005613 1.5e-63 246.5 177 65.5
CsaV3_2G028080 Cucumis sativus L. HOM05D004405 ORTHO05D005613 2.0e-63 246.1 176 68.8
PGR031G1065 Punica granatum HOM05D004405 ORTHO05D005613 3.4e-63 245.4 175 67.4
ECA233G0805 Erigeron canadensis HOM05D004405 ORTHO05D005613 9.9e-63 243.8 177 64.4
MSTRG.9635 Avicennia marina HOM05D004405 ORTHO05D005613 1.7e-62 243.0 178 65.7
SGA_v2.0_scaffold7G04073 Striga asiatica HOM05D004405 ORTHO05D005613 2.2e-62 242.7 178 66.3
CANSAT54G1019 Cannabis sativa HOM05D004405 ORTHO05D005613 6.4e-62 241.1 178 62.9
MELO3C010886.2 Cucumis melo HOM05D004405 ORTHO05D005613 6.4e-62 241.1 176 67.6
Lsat_1_v5_gn_1_20160 Lactuca sativa HOM05D004405 ORTHO05D005613 1.1e-61 240.4 179 64.8
CAN.G371.36 Capsicum annuum HOM05D004405 ORTHO05D005613 2.4e-61 239.2 168 68.5
Migut.D01835 Erythranthe guttata HOM05D004405 ORTHO05D005613 2.4e-61 239.2 175 65.7
Ah.01g019210 Amaranthus hybridus HOM05D004405 ORTHO05D005613 3.2e-61 238.8 175 65.1
Nn7g38185 Nelumbo nucifera HOM05D004405 ORTHO05D005613 4.2e-61 238.4 150 77.3
ClCG08G015700 Citrullus lanatus HOM05D004405 ORTHO05D005613 9.3e-61 237.3 176 66.5
Zm00001eb217160 Zea mays HOM05D004405 ORTHO05D005613 9.3e-61 237.3 172 67.4
Zm00001eb053470 Zea mays HOM05D004405 ORTHO05D005613 1.6e-60 236.5 172 67.4
AUR62037877 Chenopodium quinoa HOM05D004405 ORTHO05D005613 7.8e-60 234.2 177 63.8
EL10Ac7g16991 Beta vulgaris HOM05D004405 ORTHO05D005613 1.7e-59 233.0 175 65.1
Sc15g0006290 Simmondsia chinensis HOM05D004405 ORTHO05D005613 1.7e-59 233.0 160 68.8
unitig_21.g20460 Utricularia gibba HOM05D004405 ORTHO05D005613 1.7e-59 233.0 178 62.4
Os04g0418000 Oryza sativa ssp. japonica HOM05D004405 ORTHO05D005613 6.6e-59 231.1 172 65.7
Manes.05G171800 Manihot esculenta HOM05D004405 ORTHO05D005613 1.1e-58 230.3 163 71.2
HPP92_014066 Vanilla planifolia HOM05D004405 ORTHO05D005613 2.1e-57 226.1 178 61.8
CSS0025487 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 4.8e-57 224.9 147 82.3
Sed0012636 Sechium edule HOM05D004405 ORTHO05D005613 1.2e-55 220.3 176 61.9
SEGI_20825 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 5.8e-55 218.0 172 61.0
Nitab4.5_0004184g0030 Nicotiana tabacum HOM05D004405 ORTHO05D005613 7.6e-55 217.6 159 64.8
BolSC99t61278H Brassica oleracea HOM05D004405 ORTHO05D005613 2.2e-54 216.1 159 66.7
SalBow7G1402 Salvia bowleyana HOM05D004405 ORTHO05D005613 2.2e-54 216.1 169 59.8
SEGI_22288 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 3.8e-54 215.3 172 60.5
AUR62019554 Chenopodium quinoa HOM05D004405 ORTHO05D005613 6.0e-52 208.0 159 62.3
CDE01G0147 Ceratophyllum demersum HOM05D004405 ORTHO05D005613 7.9e-52 207.6 172 58.7
Manes.05G171801 Manihot esculenta HOM05D004405 ORTHO05D005613 3.9e-51 205.3 159 67.3
BolC6t35323H Brassica oleracea HOM05D004405 ORTHO05D005613 2.8e-49 199.1 162 64.2
Aqoxy6G01363 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 2.6e-47 192.6 162 59.3
FvH4_2g34710 Fragaria vesca HOM05D004405 ORTHO05D005613 1.3e-41 173.7 112 73.2
MD04G1229600 Malus domestica HOM05D004405 ORTHO05D005613 1.3e-35 153.7 106 67.9
Pp3c21_1560 Physcomitrium patens HOM05D004405 ORTHO05D005613 1.1e-34 150.6 171 43.9
CSS0003400 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 4.8e-33 145.2 76 89.5
SGA_v2.0_scaffold7G04074 Striga asiatica HOM05D004405 ORTHO05D005613 1.0e-30 137.5 150 50.0
Mapoly0033s0094 Marchantia polymorpha HOM05D004405 ORTHO05D005613 1.9e-29 133.3 172 39.0
AagrBONN_evm.TU.Sc2ySwM_344.3923 Anthoceros agrestis HOM05D004405 ORTHO05D005613 7.2e-29 131.3 171 39.2
CBR_g38490 Chara braunii HOM05D004405 ORTHO05D005613 6.7e-27 124.8 169 40.2
SMO351G0505 Selaginella moellendorffii HOM05D004405 ORTHO05D005613 3.3e-26 122.5 160 40.6
Lsat_1_v5_gn_2_117301 Lactuca sativa HOM05D004405 ORTHO05D005613 3.3e-18 95.9 86 54.7
PRCOL_00004317 Prasinoderma coloniale HOM05D004405 ORTHO05D005613 1.4e-16 90.5 150 34.7
Lsat_1_v5_gn_0_36860 Lactuca sativa HOM05D004405 ORTHO05D005613 6.9e-16 88.2 87 47.1
Actinidia22615 Actinidia chinensis HOM05D004405 ORTHO05D005613 7.2e-13 78.2 43 83.7
C08p09120 Brassica napus HOM05D004405 ORTHO05D033353 1.0e-06 57.8 53 49.1
BolC8t47758H Brassica oleracea HOM05D004405 ORTHO05D033353 1.0e-06 57.8 53 49.1
BraA05t20833Z Brassica rapa HOM05D004405 ORTHO05D033353 5.0e-06 55.5 63 46.0


User provided reference genes

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