Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015820 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 3.4e-39 164.5 80 100.0
CSS0014347 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 1.0e-38 162.9 80 95.0
HanXRQChr16g0501351 Helianthus annuus HOM05D007709 ORTHO05D009577 2.6e-18 95.1 82 54.9
Peaxi162Scf00362g00133 Petunia axillaris HOM05D007709 ORTHO05D009577 1.4e-16 89.4 87 51.7
Atru.chr5.3536 Acer truncatum HOM05D007709 ORTHO05D009577 9.1e-16 86.7 80 52.5
Nn5g30992 Nelumbo nucifera HOM05D007709 ORTHO05D009577 9.1e-16 86.7 80 51.2
Migut.N01357 Erythranthe guttata HOM05D007709 ORTHO05D009577 3.5e-15 84.7 83 44.6
Cpa.g.sc60.30 Carica papaya HOM05D007709 ORTHO05D009577 5.0e-14 80.9 68 54.4
Haze_02011 Corylus avellana HOM05D007709 ORTHO05D009577 5.0e-14 80.9 76 51.3
CAN.G1725.3 Capsicum annuum HOM05D007709 ORTHO05D009577 6.5e-14 80.5 67 53.7
Ciclev10029706m.g Citrus clementina HOM05D007709 ORTHO05D009577 1.1e-13 79.7 68 50.0
Medtr8g012330 Medicago truncatula HOM05D001671 ORTHO05D001844 1.5e-13 79.3 79 46.8
CSS0018079 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 2.5e-13 78.6 81 50.6
CSS0032875 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 2.5e-13 78.6 81 50.6
Lj3g0026575 Lotus japonicus HOM05D007709 ORTHO05D009577 7.2e-13 77.0 79 46.8
Nitab4.5_0000783g0120 Nicotiana tabacum HOM05D007709 ORTHO05D009577 1.6e-12 75.9 67 53.7
Sc14g0002460 Simmondsia chinensis HOM05D007709 ORTHO05D009577 1.6e-12 75.9 69 49.3
Thecc.02G145600 Theobroma cacao HOM05D007709 ORTHO05D009577 2.1e-12 75.5 73 49.3
Lalb_Chr07g0194411 Lupinus albus HOM05D007709 ORTHO05D009577 2.7e-12 75.1 69 46.4
BcaB01g02955 Brassica carinata HOM05D007709 ORTHO05D009577 4.7e-12 74.3 74 54.1
Aqoxy6G01622 Aquilegia oxysepala HOM05D007709 ORTHO05D009577 8.0e-12 73.6 83 47.0
Cfa005363 Carpinus fangiana HOM05D007709 ORTHO05D009577 8.0e-12 73.6 66 54.5
Rhsim05G0047200 Rhododendron simsii HOM05D007709 ORTHO05D009577 8.0e-12 73.6 85 45.9
BcaC01g04855 Brassica carinata HOM05D007709 ORTHO05D009577 1.4e-11 72.8 74 54.1
C03p33100 Brassica napus HOM05D007709 ORTHO05D009577 1.4e-11 72.8 74 54.1
BolC3t15636H Brassica oleracea HOM05D007709 ORTHO05D009577 1.4e-11 72.8 74 54.1
COL.COLO4_34305 Corchorus olitorius HOM05D007709 ORTHO05D009577 1.4e-11 72.8 70 47.1
Ah.01g017550 Amaranthus hybridus HOM05D007709 ORTHO05D009577 4.0e-11 71.2 69 53.6
Cfa005362 Carpinus fangiana HOM05D007709 ORTHO05D009577 8.8e-11 70.1 68 48.5
Eucgr.I01530 Eucalyptus grandis HOM05D007709 ORTHO05D009577 1.1e-10 69.7 62 53.2
PGR142G3111 Punica granatum HOM05D007709 ORTHO05D009577 1.1e-10 69.7 66 54.5
Thecc.02G145500 Theobroma cacao HOM05D007709 ORTHO05D009577 1.1e-10 69.7 71 46.5
TWI31G1411 Tripterygium wilfordii HOM05D007709 ORTHO05D009577 1.1e-10 69.7 66 51.5
arahy.Tifrunner.gnm1.ann1.9G47NZ Arachis hypogaea HOM05D007709 ORTHO05D009577 1.5e-10 69.3 69 47.8
PSO541G6469 Papaver somniferum HOM05D007709 ORTHO05D009577 1.5e-10 69.3 68 48.5
MD05G1135300 Malus domestica HOM05D007709 ORTHO05D009577 2.0e-10 68.9 61 55.7
Manes.11G110300 Manihot esculenta HOM05D007709 ORTHO05D009577 2.6e-10 68.6 71 49.3
A03p27450 Brassica napus HOM05D007709 ORTHO05D009577 3.3e-10 68.2 70 52.9
BraA03t11957Z Brassica rapa HOM05D007709 ORTHO05D009577 3.3e-10 68.2 70 52.9
Sp4g00020 Schrenkiella parvula HOM05D007709 ORTHO05D009577 3.3e-10 68.2 74 54.1
TPR.G29157 Trifolium pratense HOM05D007709 ORTHO05D009577 3.3e-10 68.2 66 43.9
Carub.0004s0246 Capsella rubella HOM05D007709 ORTHO05D009577 4.4e-10 67.8 80 50.0
Potri.009G167700 Populus trichocarpa HOM05D007709 ORTHO05D009577 5.7e-10 67.4 83 48.2
QL03p016612 Quercus lobata HOM05D007709 ORTHO05D009577 5.7e-10 67.4 69 53.6
QL03p016617 Quercus lobata HOM05D007709 ORTHO05D009577 5.7e-10 67.4 69 53.6
QL11p056189 Quercus lobata HOM05D007709 ORTHO05D009577 5.7e-10 67.4 69 53.6
QL11p056219 Quercus lobata HOM05D007709 ORTHO05D009577 5.7e-10 67.4 69 53.6
CANSAT25G2121 Cannabis sativa HOM05D007709 ORTHO05D009577 7.5e-10 67.0 71 49.3
DCAR_026620 Daucus carota HOM05D007709 ORTHO05D009577 7.5e-10 67.0 60 51.7
Gohir.A04G112024 Gossypium hirsutum HOM05D007709 ORTHO05D009577 1.3e-09 66.2 59 55.9
Gohir.D04G152500 Gossypium hirsutum HOM05D007709 ORTHO05D009577 1.3e-09 66.2 59 55.9
Gorai.012G139300 Gossypium raimondii HOM05D007709 ORTHO05D009577 1.3e-09 66.2 59 55.9
QL11p056180 Quercus lobata HOM05D007709 ORTHO05D009577 1.7e-09 65.9 66 53.0
AT2G23240 Arabidopsis thaliana HOM05D007709 ORTHO05D009577 2.2e-09 65.5 67 50.7
AT2G42000 Arabidopsis thaliana HOM05D007709 ORTHO05D009577 2.8e-09 65.1 75 52.0
Prupe.8G179200 Prunus persica HOM05D007709 ORTHO05D009577 2.8e-09 65.1 60 48.3
arahy.Tifrunner.gnm1.ann1.0QS5M4 Arachis hypogaea HOM05D007709 ORTHO05D009577 3.7e-09 64.7 69 44.9
Thhalv10000588m.g Eutrema salsugineum HOM05D007709 ORTHO05D009577 3.7e-09 64.7 72 51.4
Cc04_g09140 Coffea canephora HOM05D007709 ORTHO05D009577 4.8e-09 64.3 64 50.0
Glyma.18G157800 Glycine max HOM05D007709 ORTHO05D009577 4.8e-09 64.3 74 41.9
Sopen01g054290 Solanum pennellii HOM05D007709 ORTHO05D009577 4.8e-09 64.3 68 47.1
AL4G13130 Arabidopsis lyrata HOM05D007709 ORTHO05D009577 6.3e-09 63.9 67 49.3
THA.LOC104807798 Tarenaya hassleriana HOM05D007709 ORTHO05D009577 8.2e-09 63.5 64 50.0
Carub.0004s2433 Capsella rubella HOM05D007709 ORTHO05D009577 1.4e-08 62.8 85 47.1
Gorai.002G013700 Gossypium raimondii HOM05D007709 ORTHO05D009577 1.4e-08 62.8 53 50.9
QL03p016621 Quercus lobata HOM05D007709 ORTHO05D009577 3.1e-08 61.6 80 42.5
QL11p056199 Quercus lobata HOM05D007709 ORTHO05D009577 3.1e-08 61.6 80 42.5
RcHm_v2.0_Chr6g0280851 Rosa chinensis HOM05D007709 ORTHO05D009577 3.1e-08 61.6 63 47.6
AL4G40360 Arabidopsis lyrata HOM05D007709 ORTHO05D009577 2.7e-07 58.5 63 52.4
SalBow5G1409 Salvia bowleyana HOM05D007709 ORTHO05D009577 1.0e-06 56.6 81 40.7
SalBow5G2601 Salvia bowleyana HOM05D007709 ORTHO05D009577 1.0e-06 56.6 81 40.7
Sed0006301 Sechium edule HOM05D007709 ORTHO05D009577 1.3e-06 56.2 54 48.1
CARHR292840 Cardamine hirsuta HOM05D007709 ORTHO05D009577 1.7e-06 55.8 59 45.8
MELO3C013494.2 Cucumis melo HOM05D007709 ORTHO05D009577 5.0e-06 54.3 55 47.3
Gohir.D01G011700 Gossypium hirsutum HOM05D007709 ORTHO05D009577 5.0e-06 54.3 73 39.7
Os10g0542100 Oryza sativa ssp. japonica HOM05D007709 ORTHO05D009577 8.5e-06 53.5 51 47.1
Psat3g150320 Pisum sativum HOM05D007709 ORTHO05D009577 8.5e-06 53.5 79 36.7


User provided reference genes

Program Settings