Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015807 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D018822 1.3e-85 319.7 167 100.0
CSS0021968 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D018822 3.1e-82 308.5 167 97.0
CSS0019330 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D018822 3.1e-74 282.0 171 88.9
CSS0027714 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D018822 3.4e-65 251.9 164 83.5
CSS0045520 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D001724 1.1e-58 230.3 158 82.9
CSS0033952 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D018822 4.0e-58 228.4 164 77.4
CSS0044546 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D001724 6.4e-56 221.1 158 81.0
Dinv36392 Davidia involucrata HOM05D000108 ORTHO05D001724 4.2e-47 191.8 158 67.7
Actinidia06738 Actinidia chinensis HOM05D000108 ORTHO05D001724 1.2e-46 190.3 158 68.4
Cfa001680 Carpinus fangiana HOM05D000108 ORTHO05D001724 1.8e-37 159.8 158 58.9
Ciclev10030573m.g Citrus clementina HOM05D000108 ORTHO05D001724 7.4e-36 154.5 158 56.3
CiPaw.01G268600 Carya illinoinensis HOM05D000108 ORTHO05D001724 1.8e-34 149.8 158 57.0
Gohir.D10G210800 Gossypium hirsutum HOM05D000108 ORTHO05D001724 2.9e-32 142.5 153 52.9
Gorai.011G236400 Gossypium raimondii HOM05D000108 ORTHO05D001724 1.4e-31 140.2 153 52.3
GSVIVG01016220001 Vitis vinifera HOM05D003228 ORTHO05D001724 1.4e-31 140.2 158 54.4
TWI63G0200 Tripterygium wilfordii HOM05D000108 ORTHO05D001724 2.5e-31 139.4 158 53.2
QL08p054367 Quercus lobata HOM05D000108 ORTHO05D001724 9.4e-31 137.5 150 54.0
QL08p054496 Quercus lobata HOM05D000108 ORTHO05D001724 9.4e-31 137.5 150 54.0
MD01G1103200 Malus domestica HOM05D000108 ORTHO05D001724 1.8e-29 133.3 156 51.3
MD07G1169900 Malus domestica HOM05D000108 ORTHO05D001724 2.0e-28 129.8 156 50.6
Cpa.g.sc53.131 Carica papaya HOM05D000108 ORTHO05D001724 2.6e-28 129.4 155 52.3
HanXRQChr08g0218531 Helianthus annuus HOM05D000108 ORTHO05D001724 7.4e-28 127.9 158 48.1
RcHm_v2.0_Chr1g0362591 Rosa chinensis HOM05D000108 ORTHO05D001724 1.3e-27 127.1 157 49.0
Oeu007409.1 Olea europaea HOM05D000108 ORTHO05D001724 2.2e-27 126.3 156 48.7
ECA233G5278 Erigeron canadensis HOM05D000108 ORTHO05D001724 1.4e-26 123.6 158 44.3
PSO063G0754 Papaver somniferum HOM05D000108 ORTHO05D001724 1.8e-26 123.2 148 45.9
FAN03G2395 Fragaria x ananassa HOM05D000108 ORTHO05D001724 2.4e-26 122.9 158 48.1
MBI18_g01552_MAGBIO Magnolia biondii HOM05D000108 ORTHO05D001724 3.1e-26 122.5 135 53.3
FvH4_7g18790 Fragaria vesca HOM05D000108 ORTHO05D001724 4.1e-26 122.1 158 48.1
FAN06G1146 Fragaria x ananassa HOM05D000108 ORTHO05D001724 4.1e-26 122.1 158 48.1
FAN06G2234 Fragaria x ananassa HOM05D000108 ORTHO05D001724 4.1e-26 122.1 158 48.1
FAN10G1740 Fragaria x ananassa HOM05D000108 ORTHO05D001724 4.1e-26 122.1 158 47.5
FAN10G3052 Fragaria x ananassa HOM05D000108 ORTHO05D001724 4.1e-26 122.1 158 47.5
PSO339G0808 Papaver somniferum HOM05D000108 ORTHO05D001724 4.1e-26 122.1 148 45.3
Cc02_g10930 Coffea canephora HOM05D000108 ORTHO05D001724 5.3e-26 121.7 161 45.3
Potri.010G227000 Populus trichocarpa HOM05D000108 ORTHO05D001724 3.4e-25 119.0 141 50.4
FAN01G0155 Fragaria x ananassa HOM05D000108 ORTHO05D001724 5.9e-25 118.2 158 47.5
Prupe.2G208800 Prunus persica HOM05D000108 ORTHO05D001724 1.7e-24 116.7 158 48.1
CANSAT56G2924 Cannabis sativa HOM05D000108 ORTHO05D001724 5.0e-24 115.2 165 44.2
ClCG08G007710 Citrullus lanatus HOM05D000108 ORTHO05D001724 2.5e-23 112.8 179 42.5
Solyc11g008350.2 Solanum lycopersicum HOM05D000108 ORTHO05D001724 4.2e-23 112.1 154 43.5
CAN.G321.63 Capsicum annuum HOM05D000108 ORTHO05D001724 1.2e-22 110.5 195 38.5
TAR636G1445 Trochodendron aralioides HOM05D000108 ORTHO05D001724 1.2e-22 110.5 107 57.0
MSTRG.9150 Avicennia marina HOM05D000108 ORTHO05D001724 8.0e-22 107.8 130 47.7
Gohir.A10G202600 Gossypium hirsutum HOM05D000108 ORTHO05D001724 2.3e-21 106.3 192 38.5
Lj2A20G44 Lonicera japonica HOM05D000108 ORTHO05D001724 5.2e-21 105.1 141 44.0
Eucgr.J01062 Eucalyptus grandis HOM05D000108 ORTHO05D001724 8.8e-21 104.4 149 43.0
MELO3C019823.2 Cucumis melo HOM05D000108 ORTHO05D001724 1.1e-20 104.0 158 44.3
Manes.05G201200 Manihot esculenta HOM05D000108 ORTHO05D001724 3.3e-20 102.4 157 45.2
Sopen11g004160 Solanum pennellii HOM05D000108 ORTHO05D001724 2.2e-19 99.8 154 40.9
Peaxi162Scf00145g01216 Petunia axillaris HOM05D000108 ORTHO05D001724 2.8e-19 99.4 154 41.6
CsaV3_6G036700 Cucumis sativus L. HOM05D000108 ORTHO05D001724 3.7e-19 99.0 157 42.7
Aqoxy1G01143 Aquilegia oxysepala HOM05D000108 ORTHO05D001724 1.1e-18 97.4 99 52.5
Sed0027974 Sechium edule HOM05D000108 ORTHO05D001724 5.3e-18 95.1 158 40.5
CARHR164850 Cardamine hirsuta HOM05D000108 ORTHO05D001724 3.5e-17 92.4 153 41.2
Thhalv10010108m.g Eutrema salsugineum HOM05D000108 ORTHO05D001724 1.0e-16 90.9 153 41.2
Sp5g07550 Schrenkiella parvula HOM05D000108 ORTHO05D001724 1.0e-16 90.9 153 40.5
AT3G54870 Arabidopsis thaliana HOM05D000108 ORTHO05D001724 5.0e-16 88.6 162 37.7
BcaB01g00151 Brassica carinata HOM05D000108 ORTHO05D001724 5.0e-16 88.6 153 39.9
BcaC07g39771 Brassica carinata HOM05D000108 ORTHO05D001724 5.0e-16 88.6 153 39.9
A09p47810 Brassica napus HOM05D000108 ORTHO05D001724 5.0e-16 88.6 153 39.9
BolC8t50615H Brassica oleracea HOM05D000108 ORTHO05D001724 5.0e-16 88.6 153 39.9
BraA09t40238Z Brassica rapa HOM05D000108 ORTHO05D001724 5.0e-16 88.6 153 39.9
C08p30060 Brassica napus HOM05D000108 ORTHO05D001724 6.5e-16 88.2 153 39.9
Duzib114G0930 Durio zibethinus HOM05D000108 ORTHO05D001724 1.1e-15 87.4 98 52.0
ATR1126G033 Amborella trichopoda HOM05D000108 ORTHO05D001724 1.5e-15 87.0 153 38.6
Haze_16873 Corylus avellana HOM05D000108 ORTHO05D001724 1.5e-15 87.0 71 66.2
Gohir.A05G411200 Gossypium hirsutum HOM05D000108 ORTHO05D001724 2.5e-15 86.3 156 39.1
COL.COLO4_33386 Corchorus olitorius HOM05D000108 ORTHO05D001724 9.4e-15 84.3 93 52.7
AL5G35980 Arabidopsis lyrata HOM05D000108 ORTHO05D001724 2.1e-14 83.2 162 37.7
Aa31sc43G100 Aethionema arabicum HOM05D000108 ORTHO05D001724 1.8e-13 80.1 155 38.1
Nitab4.5_0001450g0060 Nicotiana tabacum HOM05D000108 ORTHO05D001724 8.8e-13 77.8 140 37.1
Haze_16855 Corylus avellana HOM05D000108 ORTHO05D001724 3.3e-12 75.9 110 43.6
Nitab4.5_0001659g0160 Nicotiana tabacum HOM05D000108 ORTHO05D001724 3.3e-12 75.9 140 36.4
Thecc.10G083400 Theobroma cacao HOM05D000108 ORTHO05D001724 4.4e-12 75.5 85 52.9
SGA_v2.0_scaffold62G21388 Striga asiatica HOM05D000108 ORTHO05D001724 7.5e-12 74.7 86 50.0
DCAR_006416 Daucus carota HOM05D000108 ORTHO05D001724 2.8e-11 72.8 98 44.9
Sabra10G0175100 Salix brachista HOM05D000108 ORTHO05D001724 4.8e-11 72.0 123 44.7
Rhsim03G0115900 Rhododendron simsii HOM05D000108 ORTHO05D001724 1.8e-10 70.1 158 36.7
Gohir.D04G004800 Gossypium hirsutum HOM05D000108 ORTHO05D001724 2.4e-10 69.7 158 34.2
THA.LOC104825220 Tarenaya hassleriana HOM05D000108 ORTHO05D001724 9.1e-10 67.8 129 35.7
Gorai.012G006000 Gossypium raimondii HOM05D000108 ORTHO05D001724 1.6e-09 67.0 158 32.9
Sc06g0001660 Simmondsia chinensis HOM05D000108 ORTHO05D001724 4.5e-09 65.5 207 27.5
Lj2A20T48 Lonicera japonica HOM05D010180 ORTHO05D018822 2.2e-08 63.2 68 51.5
AUR62014259 Chenopodium quinoa HOM05D000108 ORTHO05D001724 2.9e-08 62.8 93 38.7
Lsat_1_v5_gn_8_20800 Lactuca sativa HOM05D000108 ORTHO05D001724 2.9e-08 62.8 88 46.6
AUR62038481 Chenopodium quinoa HOM05D000108 ORTHO05D001724 1.1e-07 60.8 90 38.9


User provided reference genes

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