Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015772 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 2.2e-111 405.6 203 100.0
Actinidia37713 Actinidia chinensis HOM05D004185 ORTHO05D005294 4.6e-88 328.2 195 85.6
Actinidia19546 Actinidia chinensis HOM05D004185 ORTHO05D005294 8.0e-85 317.4 197 81.7
Rhsim01G0198500 Rhododendron simsii HOM05D004185 ORTHO05D005294 8.9e-84 313.9 195 82.1
Rhsim08G0038300 Rhododendron simsii HOM05D004185 ORTHO05D005294 8.3e-82 307.4 195 81.0
vmacro18393 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 1.9e-81 306.2 197 79.7
GSVIVG01032967001 Vitis vinifera HOM05D004185 ORTHO05D005294 6.8e-68 261.2 193 69.9
Atru.chr11.1029 Acer truncatum HOM05D004185 ORTHO05D005294 4.4e-67 258.5 193 69.9
Atru.chr3.2840 Acer truncatum HOM05D004185 ORTHO05D005294 1.7e-66 256.5 193 69.4
Lj1A1083G27 Lonicera japonica HOM05D004185 ORTHO05D005294 6.4e-66 254.6 192 70.3
Manes.11G075000 Manihot esculenta HOM05D004185 ORTHO05D005294 8.4e-66 254.2 188 70.7
Haze_14968 Corylus avellana HOM05D004185 ORTHO05D005294 1.4e-65 253.4 195 70.8
Peaxi162Scf00060g00441 Petunia axillaris HOM05D004185 ORTHO05D005294 3.2e-65 252.3 194 66.5
Cfa007152 Carpinus fangiana HOM05D004185 ORTHO05D005294 4.1e-65 251.9 195 69.7
Hma1.2p1_0565F.1_g179520 Hydrangea macrophylla HOM05D004185 ORTHO05D005294 5.4e-65 251.5 196 70.9
CAN.G767.4 Capsicum annuum HOM05D004185 ORTHO05D005294 9.2e-65 250.8 191 66.5
Sc07g0003880 Simmondsia chinensis HOM05D004185 ORTHO05D005294 9.2e-65 250.8 191 67.5
PGSC0003DMG402004569 Solanum tuberosum HOM05D004185 ORTHO05D005294 1.6e-64 250.0 191 67.5
TAR374G1058 Trochodendron aralioides HOM05D004185 ORTHO05D005294 2.7e-64 249.2 223 62.3
Duzib084G1135 Durio zibethinus HOM05D004185 ORTHO05D005294 3.5e-64 248.8 186 67.2
Sopen10g001890 Solanum pennellii HOM05D004185 ORTHO05D005294 4.6e-64 248.4 191 67.0
Thecc.04G049500 Theobroma cacao HOM05D004185 ORTHO05D005294 4.6e-64 248.4 162 75.3
Sabra16G0256800 Salix brachista HOM05D004185 ORTHO05D005294 6.0e-64 248.1 161 74.5
Solyc10g005930.2 Solanum lycopersicum HOM05D004185 ORTHO05D005294 7.8e-64 247.7 191 64.9
Prupe.6G095300 Prunus persica HOM05D004185 ORTHO05D005294 1.0e-63 247.3 193 65.8
Ciclev10005565m.g Citrus clementina HOM05D004185 ORTHO05D005294 1.3e-63 246.9 194 68.0
Lj1g0009190 Lotus japonicus HOM05D004185 ORTHO05D005294 2.3e-63 246.1 193 66.8
MBI07_g13955_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 2.3e-63 246.1 197 68.0
FAN21G3167 Fragaria x ananassa HOM05D004185 ORTHO05D005294 3.0e-63 245.7 195 65.6
TAR622G0010 Trochodendron aralioides HOM05D004185 ORTHO05D005294 3.0e-63 245.7 137 85.4
arahy.Tifrunner.gnm1.ann1.DC6XCB Arachis hypogaea HOM05D004185 ORTHO05D005294 5.1e-63 245.0 189 65.6
arahy.Tifrunner.gnm1.ann1.J4TN1Z Arachis hypogaea HOM05D004185 ORTHO05D005294 6.6e-63 244.6 189 65.6
HanXRQChr03g0070171 Helianthus annuus HOM05D004185 ORTHO05D005294 6.6e-63 244.6 191 66.0
HanXRQChr05g0146191 Helianthus annuus HOM05D004185 ORTHO05D005294 6.6e-63 244.6 186 66.1
PSO478G4545 Papaver somniferum HOM05D004185 ORTHO05D005294 1.1e-62 243.8 175 69.7
TWI63G0858 Tripterygium wilfordii HOM05D004185 ORTHO05D005294 1.1e-62 243.8 197 68.0
ECA232G0163 Erigeron canadensis HOM05D004185 ORTHO05D005294 1.5e-62 243.4 175 68.6
Glyma.16G046900 Glycine max HOM05D004185 ORTHO05D005294 1.9e-62 243.0 191 65.4
Medtr7g084480 Medicago truncatula HOM05D004185 ORTHO05D005294 3.3e-62 242.3 147 78.9
QL08p064476 Quercus lobata HOM05D004185 ORTHO05D005294 4.3e-62 241.9 214 62.1
TPR.G26467 Trifolium pratense HOM05D004185 ORTHO05D005294 4.3e-62 241.9 147 78.9
Lsat_1_v5_gn_9_110520 Lactuca sativa HOM05D004185 ORTHO05D005294 5.6e-62 241.5 188 64.9
FvH4_3g33130 Fragaria vesca HOM05D004185 ORTHO05D005294 7.3e-62 241.1 195 64.6
Potri.001G391400 Populus trichocarpa HOM05D004185 ORTHO05D005294 7.3e-62 241.1 162 72.8
Cpa.g.sc139.45 Carica papaya HOM05D004185 ORTHO05D005294 9.6e-62 240.7 138 84.1
FAN16G0073 Fragaria x ananassa HOM05D004185 ORTHO05D005294 1.2e-61 240.4 199 63.8
PSO017G0731 Papaver somniferum HOM05D004185 ORTHO05D005294 1.2e-61 240.4 139 82.0
Gorai.002G196300 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.6e-61 240.0 161 72.0
VMungo0464G1671 Vigna mungo HOM05D004185 ORTHO05D005294 2.1e-61 239.6 192 65.1
Gohir.A09G051200 Gossypium hirsutum HOM05D004185 ORTHO05D005294 3.6e-61 238.8 161 72.7
Gohir.D01G158300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 3.6e-61 238.8 161 71.4
Psat3g092000 Pisum sativum HOM05D004185 ORTHO05D005294 3.6e-61 238.8 144 78.5
Nitab4.5_0002655g0020 Nicotiana tabacum HOM05D004185 ORTHO05D005294 4.7e-61 238.4 214 59.8
Ca_08226_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 6.2e-61 238.0 193 65.3
FAN25G2535 Fragaria x ananassa HOM05D004185 ORTHO05D005294 6.2e-61 238.0 195 63.6
CANSAT80G1231 Cannabis sativa HOM05D004185 ORTHO05D005294 8.1e-61 237.7 197 65.0
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 8.1e-61 237.7 167 69.5
Oeu023432.1 Olea europaea HOM05D004185 ORTHO05D005294 8.1e-61 237.7 138 82.6
RcHm_v2.0_Chr7g0223141 Rosa chinensis HOM05D004185 ORTHO05D005294 1.4e-60 236.9 195 63.6
FvH4_6g09080 Fragaria vesca HOM05D004185 ORTHO05D005294 1.8e-60 236.5 195 65.1
Lj2g0021694 Lotus japonicus HOM05D004185 ORTHO05D005294 2.4e-60 236.1 138 81.2
Nn1g02944 Nelumbo nucifera HOM05D004185 ORTHO05D005294 3.1e-60 235.7 148 76.4
PGR142G0491 Punica granatum HOM05D004185 ORTHO05D005294 5.2e-60 235.0 168 71.4
AUR62021660 Chenopodium quinoa HOM05D004185 ORTHO05D005294 8.9e-60 234.2 141 79.4
FAN14G0322 Fragaria x ananassa HOM05D004185 ORTHO05D005294 8.9e-60 234.2 199 63.8
EL10Ac5g11038 Beta vulgaris HOM05D004185 ORTHO05D005294 1.2e-59 233.8 145 77.2
AUR62008433 Chenopodium quinoa HOM05D004185 ORTHO05D005294 1.2e-59 233.8 141 79.4
CiPaw.07G054200 Carya illinoinensis HOM05D004185 ORTHO05D005294 1.5e-59 233.4 194 66.5
Eucgr.F01985 Eucalyptus grandis HOM05D004185 ORTHO05D005294 2.0e-59 233.0 153 77.1
CARHR031200 Cardamine hirsuta HOM05D004185 ORTHO05D005294 2.6e-59 232.6 191 63.9
Aa31LG2G14180 Aethionema arabicum HOM05D004185 ORTHO05D005294 5.8e-59 231.5 191 62.3
MBI07_g07565_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 7.6e-59 231.1 139 80.6
FAN05G5133 Fragaria x ananassa HOM05D004185 ORTHO05D005294 9.9e-59 230.7 195 63.6
Zm00001eb332710 Zea mays HOM05D004185 ORTHO05D005294 9.9e-59 230.7 153 72.5
Aqoxy6G01376 Aquilegia oxysepala HOM05D004185 ORTHO05D005294 1.3e-58 230.3 142 78.2
Nitab4.5_0000426g0080 Nicotiana tabacum HOM05D004185 ORTHO05D005294 2.2e-58 229.6 219 57.5
Dinv33271 Davidia involucrata HOM05D004185 ORTHO05D005294 2.9e-58 229.2 207 63.3
Thhalv10008417m.g Eutrema salsugineum HOM05D004185 ORTHO05D005294 2.9e-58 229.2 192 62.5
AL1G45960 Arabidopsis lyrata HOM05D004185 ORTHO05D005294 3.8e-58 228.8 191 62.3
Lalb_Chr02g0153581 Lupinus albus HOM05D004185 ORTHO05D005294 3.8e-58 228.8 196 60.7
MD03G1104500 Malus domestica HOM05D004185 ORTHO05D005294 3.8e-58 228.8 136 80.1
arahy.Tifrunner.gnm1.ann1.75SEPN Arachis hypogaea HOM05D004185 ORTHO05D005294 4.9e-58 228.4 188 60.1
MD11G1131000 Malus domestica HOM05D004185 ORTHO05D005294 6.4e-58 228.0 136 79.4
CDE09G0075 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 8.4e-58 227.6 182 62.1
Migut.D01934 Erythranthe guttata HOM05D004185 ORTHO05D005294 8.4e-58 227.6 191 62.3
Os01g0276500 Oryza sativa ssp. japonica HOM05D004185 ORTHO05D005294 8.4e-58 227.6 137 78.1
THA.LOC104812726 Tarenaya hassleriana HOM05D004185 ORTHO05D005294 8.4e-58 227.6 176 64.8
BraA09t38984Z Brassica rapa HOM05D004185 ORTHO05D005294 1.1e-57 227.3 193 60.1
DCAR_009570 Daucus carota HOM05D004185 ORTHO05D005294 1.1e-57 227.3 140 77.1
A09p34390 Brassica napus HOM05D004185 ORTHO05D005294 1.4e-57 226.9 191 60.7
AT1G31860 Arabidopsis thaliana HOM05D004185 ORTHO05D005294 2.4e-57 226.1 138 78.3
CDE02G0170 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 3.2e-57 225.7 185 60.5
MSTRG.11461 Avicennia marina HOM05D004185 ORTHO05D005294 4.2e-57 225.3 130 81.5
SGA_v2.0_scaffold114G31833 Striga asiatica HOM05D004185 ORTHO05D005294 4.2e-57 225.3 138 78.3
BcaC05g27950 Brassica carinata HOM05D004185 ORTHO05D005294 9.3e-57 224.2 192 60.9
C05p39540 Brassica napus HOM05D004185 ORTHO05D005294 9.3e-57 224.2 192 60.9
BolC5t32695H Brassica oleracea HOM05D004185 ORTHO05D005294 9.3e-57 224.2 192 60.9
ATR0602G180 Amborella trichopoda HOM05D004185 ORTHO05D005294 6.0e-56 221.5 139 75.5
Sp1g27580 Schrenkiella parvula HOM05D004185 ORTHO05D005294 7.8e-56 221.1 192 60.9
A05p25460 Brassica napus HOM05D004185 ORTHO05D005294 1.0e-55 220.7 192 60.9
BcaB07g32843 Brassica carinata HOM05D004185 ORTHO05D005294 1.7e-55 219.9 138 75.4
SalBow2G1694 Salvia bowleyana HOM05D004185 ORTHO05D005294 2.3e-55 219.5 129 79.1
BraA05t21430Z Brassica rapa HOM05D004185 ORTHO05D005294 8.7e-55 217.6 191 59.7
BcaB03g13785 Brassica carinata HOM05D004185 ORTHO05D005294 1.1e-54 217.2 138 74.6
SEGI_19426 Sequoiadendron giganteum HOM05D004185 ORTHO05D005294 2.5e-54 216.1 139 71.2
Nn7g37500 Nelumbo nucifera HOM05D004185 ORTHO05D005294 3.3e-54 215.7 171 64.9
FAN02G1839 Fragaria x ananassa HOM05D004185 ORTHO05D005294 5.6e-54 214.9 196 60.7
ClCG01G007890 Citrullus lanatus HOM05D004185 ORTHO05D005294 2.1e-53 213.0 139 69.8
Gorai.006G057300 Gossypium raimondii HOM05D004185 ORTHO05D005294 2.1e-53 213.0 161 67.7
BcaC05g27215 Brassica carinata HOM05D004185 ORTHO05D005294 1.8e-52 209.9 143 72.7
BolC5t31845H Brassica oleracea HOM05D004185 ORTHO05D005294 1.8e-52 209.9 143 72.7
MELO3C005094.2 Cucumis melo HOM05D004185 ORTHO05D005294 1.8e-52 209.9 183 57.9
unitig_0.g1440 Utricularia gibba HOM05D004185 ORTHO05D005294 3.1e-52 209.1 134 75.4
Mapoly0010s0125 Marchantia polymorpha HOM05D004185 ORTHO05D005294 5.3e-52 208.4 141 71.6
CsaV3_5G025000 Cucumis sativus L. HOM05D004185 ORTHO05D005294 2.6e-51 206.1 194 55.2
Gorai.008G088200 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.7e-50 203.4 130 74.6
SMO119G0194 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 1.7e-50 203.4 143 67.1
AagrBONN_evm.TU.Sc2ySwM_228.4587 Anthoceros agrestis HOM05D004185 ORTHO05D005294 1.9e-49 199.9 142 69.0
Pp3c19_11880 Physcomitrium patens HOM05D004185 ORTHO05D005294 9.3e-49 197.6 154 63.0
MD03G1104300 Malus domestica HOM05D004185 ORTHO05D005294 3.5e-48 195.7 143 69.2
SHI18823 Sapria himalayana HOM05D004185 ORTHO05D005294 6.0e-48 194.9 152 62.5
CSS0049496 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 4.8e-45 185.3 100 88.0
Hund11935 Selenicereus undatus HOM05D004185 ORTHO05D005294 1.1e-44 184.1 107 78.5
CBR_g41148 Chara braunii HOM05D004185 ORTHO05D005294 1.8e-44 183.3 165 57.6
Phvul.001G082700 Phaseolus vulgaris HOM05D004185 ORTHO05D005294 1.5e-43 180.3 107 78.5
CBR_g45683 Chara braunii HOM05D004185 ORTHO05D005294 2.0e-43 179.9 154 59.7
RcHm_v2.0_Chr5g0060441 Rosa chinensis HOM05D004185 ORTHO05D005294 7.6e-43 177.9 107 80.4
Carub.0001s3019 Capsella rubella HOM05D004185 ORTHO05D005294 1.7e-42 176.8 107 78.5
Cc02_g08450 Coffea canephora HOM05D004185 ORTHO05D005294 1.1e-41 174.1 107 77.6
Gohir.D09G052300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 2.4e-41 172.9 107 76.6
Haze_15442 Corylus avellana HOM05D004185 ORTHO05D005294 1.2e-40 170.6 134 65.7
Sed0024479 Sechium edule HOM05D004185 ORTHO05D005294 2.7e-40 169.5 110 72.7
HPP92_023021 Vanilla planifolia HOM05D004185 ORTHO05D005294 2.7e-40 169.5 107 72.9
Cc00_g25400 Coffea canephora HOM05D004185 ORTHO05D005294 3.5e-40 169.1 107 76.6
MCO14G189 Micromonas commoda HOM05D004185 ORTHO05D005294 7.9e-40 167.9 147 57.1
Gohir.1Z049352 Gossypium hirsutum HOM05D004185 ORTHO05D005294 2.8e-37 159.5 107 72.9
Gohir.D12G080201 Gossypium hirsutum HOM05D004185 ORTHO05D005294 2.8e-37 159.5 107 72.9
Prupe.6G096900 Prunus persica HOM05D004185 ORTHO05D005294 7.6e-35 151.4 134 59.0
PRCOL_00000818 Prasinoderma coloniale HOM05D004185 ORTHO05D005294 1.4e-33 147.1 134 54.5
vmacro12996 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 3.9e-31 139.0 130 63.1
CSS0023313 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 8.7e-31 137.9 95 74.7
Cre13.g576650 Chlamydomonas reinhardtii HOM05D004185 ORTHO05D005294 2.4e-28 129.8 141 46.1
C05p31190 Brassica napus HOM05D004185 ORTHO05D005294 4.1e-28 129.0 195 41.5
Gohir.D11G259201 Gossypium hirsutum HOM05D002015 ORTHO05D016007 5.3e-28 128.6 74 85.1
Gohir.D01G143966 Gossypium hirsutum HOM05D002015 ORTHO05D016007 2.0e-27 126.7 74 83.8
Gohir.D02G127900 Gossypium hirsutum HOM05D002015 ORTHO05D016007 2.6e-27 126.3 74 83.8
Gorai.002G177700 Gossypium raimondii HOM05D002015 ORTHO05D016007 3.4e-27 125.9 74 83.8
Gohir.D04G064100 Gossypium hirsutum HOM05D002015 ORTHO05D016007 1.3e-26 124.0 74 81.1
Ca_29370_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 1.3e-18 97.4 128 39.8
Gorai.007G236100 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.8e-15 87.0 70 60.0
Gohir.D11G219700 Gossypium hirsutum HOM05D004185 ORTHO05D005294 2.3e-15 86.7 70 58.6
QL02p069093 Quercus lobata HOM05D004185 ORTHO05D005294 5.7e-14 82.0 55 67.3
Gorai.005G143700 Gossypium raimondii HOM05D004185 ORTHO05D016007 1.8e-12 77.0 44 84.1
Gohir.D13G151200 Gossypium hirsutum HOM05D004185 ORTHO05D016007 2.6e-11 73.2 44 77.3
arahy.Tifrunner.gnm1.ann1.R9VNWC Arachis hypogaea HOM05D004185 ORTHO05D085194 6.5e-10 68.6 66 54.5
RcHm_v2.0_Chr5g0060451 Rosa chinensis HOM05D004185 ORTHO05D005294 1.0e-07 61.2 84 46.4
A09p34420 Brassica napus HOM05D004185 ORTHO05D040565 3.9e-07 59.3 38 65.8
BraA09t38986Z Brassica rapa HOM05D004185 ORTHO05D040565 3.9e-07 59.3 38 65.8


User provided reference genes

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