Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015764 Camellia sinensis var. sinensis HOM05D007298 ORTHO05D009226 9.0e-142 506.9 257 100.0
Actinidia30606 Actinidia chinensis HOM05D007298 ORTHO05D009226 1.3e-87 327.0 265 67.9
vmacro16084 Vaccinium macrocarpon HOM05D007298 ORTHO05D009226 2.5e-83 312.8 292 64.4
Hma1.2p1_1436F.1_g283160 Hydrangea macrophylla HOM05D007298 ORTHO05D009226 1.1e-75 287.3 284 59.9
Rhsim12G0097800 Rhododendron simsii HOM05D007298 ORTHO05D009226 4.3e-75 285.4 270 63.7
Gohir.D12G189800 Gossypium hirsutum HOM05D007298 ORTHO05D009226 2.7e-69 266.2 278 55.0
Gohir.A12G186800 Gossypium hirsutum HOM05D007298 ORTHO05D009226 4.6e-69 265.4 278 54.7
Gorai.008G203600 Gossypium raimondii HOM05D007298 ORTHO05D009226 1.7e-68 263.5 278 54.3
Thecc.03G118900 Theobroma cacao HOM05D007298 ORTHO05D009226 2.3e-68 263.1 288 54.5
Cc11_g17470 Coffea canephora HOM05D007298 ORTHO05D009226 2.8e-66 256.1 285 54.7
CiPaw.13G179900 Carya illinoinensis HOM05D007298 ORTHO05D009226 3.6e-66 255.8 284 53.9
COL.COLO4_37432 Corchorus olitorius HOM05D007298 ORTHO05D009226 3.6e-66 255.8 294 53.7
Sabra01G0000900 Salix brachista HOM05D007298 ORTHO05D009226 6.2e-66 255.0 289 53.3
Nn7g35796 Nelumbo nucifera HOM05D007298 ORTHO05D009226 1.8e-65 253.4 291 54.6
TAR623G1587 Trochodendron aralioides HOM05D007298 ORTHO05D009226 5.2e-65 251.9 277 55.2
Cfa009528 Carpinus fangiana HOM05D007298 ORTHO05D009226 3.4e-64 249.2 297 54.2
Duzib205G1649 Durio zibethinus HOM05D007298 ORTHO05D009226 7.8e-61 238.0 282 54.3
Potri.001G001000 Populus trichocarpa HOM05D007298 ORTHO05D009226 7.8e-61 238.0 272 52.9
Actinidia09612 Actinidia chinensis HOM05D007298 ORTHO05D009226 1.0e-60 237.7 256 55.1
Nitab4.5_0007554g0010 Nicotiana tabacum HOM05D007298 ORTHO05D009226 1.0e-60 237.7 273 49.1
MBI13_g02430_MAGBIO Magnolia biondii HOM05D007298 ORTHO05D009226 3.9e-60 235.7 283 51.6
MELO3C026268.2 Cucumis melo HOM05D007298 ORTHO05D009226 9.6e-59 231.1 273 53.1
CsaV3_1G001220 Cucumis sativus L. HOM05D007298 ORTHO05D009226 9.6e-59 231.1 273 53.1
Lj4g0005920 Lotus japonicus HOM05D007298 ORTHO05D009226 1.3e-58 230.7 281 51.6
Nn2g15906 Nelumbo nucifera HOM05D007298 ORTHO05D009226 3.6e-58 229.2 302 50.7
VMungo0251G1522 Vigna mungo HOM05D007298 ORTHO05D009226 4.8e-58 228.8 275 49.5
Glyma.07G199400 Glycine max HOM05D007298 ORTHO05D009226 3.1e-57 226.1 281 48.8
ClCG06G017280 Citrullus lanatus HOM05D007298 ORTHO05D009226 1.5e-56 223.8 263 53.2
Phvul.002G230700 Phaseolus vulgaris HOM05D007298 ORTHO05D009226 1.5e-56 223.8 280 49.6
Nitab4.5_0001600g0070 Nicotiana tabacum HOM05D005538 ORTHO05D007055 4.5e-56 222.2 259 49.0
Sed0017427 Sechium edule HOM05D007298 ORTHO05D009226 5.8e-56 221.9 274 51.8
PGSC0003DMG400025413 Solanum tuberosum HOM05D007298 ORTHO05D009226 5.8e-56 221.9 278 48.6
Aqoxy2G04036 Aquilegia oxysepala HOM05D007298 ORTHO05D009226 2.9e-55 219.5 288 46.9
Peaxi162Scf00128g01770 Petunia axillaris HOM05D007298 ORTHO05D009226 4.9e-55 218.8 271 46.9
Migut.K01030 Erythranthe guttata HOM05D007298 ORTHO05D009226 4.2e-54 215.7 252 50.4
Eucgr.J01725 Eucalyptus grandis HOM05D007298 ORTHO05D009226 4.2e-54 215.7 273 52.4
Glyma.13G177000 Glycine max HOM05D007298 ORTHO05D009226 7.1e-54 214.9 273 48.4
Lalb_Chr16g0383911 Lupinus albus HOM05D007298 ORTHO05D009226 3.5e-53 212.6 282 47.5
Dinv31519 Davidia involucrata HOM05D007298 ORTHO05D009226 6.0e-53 211.8 244 54.9
Manes.15G111000 Manihot esculenta HOM05D007298 ORTHO05D009226 3.0e-52 209.5 278 49.6
TWI32G0891 Tripterygium wilfordii HOM05D007298 ORTHO05D009226 1.1e-51 207.6 254 52.8
Psat7g113280 Pisum sativum HOM05D007298 ORTHO05D009226 1.5e-51 207.2 287 45.3
TPR.G16338 Trifolium pratense HOM05D007298 ORTHO05D009226 1.9e-51 206.8 288 46.9
Nitab4.5_0008442g0010 Nicotiana tabacum HOM05D007298 ORTHO05D009226 1.3e-50 204.1 289 43.6
Sopen05g018720 Solanum pennellii HOM05D007298 ORTHO05D009226 1.3e-50 204.1 265 46.8
arahy.Tifrunner.gnm1.ann1.IS7ZQD Arachis hypogaea HOM05D002349 ORTHO05D002464 6.2e-50 201.8 266 48.1
arahy.Tifrunner.gnm1.ann1.MB6W4F Arachis hypogaea HOM05D002349 ORTHO05D002464 6.2e-50 201.8 266 48.1
PGR119G1464 Punica granatum HOM05D007298 ORTHO05D009226 2.4e-49 199.9 269 49.1
Haze_22918 Corylus avellana HOM05D007298 ORTHO05D009226 3.1e-49 199.5 296 49.3
QL01p007822 Quercus lobata HOM05D007298 ORTHO05D009226 9.0e-49 198.0 275 46.2
Medtr4g088515 Medicago truncatula HOM05D000062 ORTHO05D000043 2.0e-48 196.8 273 45.4
Lalb_Chr05g0218531 Lupinus albus HOM05D007298 ORTHO05D009226 3.4e-48 196.1 271 48.0
Sc05g0003880 Simmondsia chinensis HOM05D007298 ORTHO05D009226 5.8e-48 195.3 290 45.9
Solyc05g024020.1 Solanum lycopersicum HOM05D007298 ORTHO05D009226 5.8e-48 195.3 259 46.7
Lsat_1_v5_gn_4_2201 Lactuca sativa HOM05D007298 ORTHO05D009226 1.4e-46 190.7 256 47.7
Ca_18576_v3 Cicer arietinum L. HOM05D007298 ORTHO05D009226 3.2e-46 189.5 280 44.6
Sp7g24320 Schrenkiella parvula HOM05D007298 ORTHO05D009226 5.5e-46 188.7 288 45.1
Hma1.2p1_0459F.1_g157260 Hydrangea macrophylla HOM05D007298 ORTHO05D009226 7.1e-46 188.3 226 52.7
Lalb_Chr09g0327771 Lupinus albus HOM05D007298 ORTHO05D009226 4.6e-45 185.7 281 47.0
Carub.0007s1454 Capsella rubella HOM05D007298 ORTHO05D009226 6.0e-45 185.3 285 45.3
Ciclev10017525m.g Citrus clementina HOM05D007298 ORTHO05D009226 1.8e-44 183.7 246 50.0
MD11G1000700 Malus domestica HOM05D007298 ORTHO05D009226 2.3e-44 183.3 256 49.6
SGA_v2.0_scaffold9G04794 Striga asiatica HOM05D002076 ORTHO05D002087 2.3e-44 183.3 252 47.2
THA.LOC104813474 Tarenaya hassleriana HOM05D007298 ORTHO05D009226 1.1e-43 181.0 290 44.1
FvH4_3g45980 Fragaria vesca HOM05D007298 ORTHO05D009226 1.5e-43 180.6 313 43.1
FAN16G2589 Fragaria x ananassa HOM05D007298 ORTHO05D009226 7.4e-43 178.3 314 41.7
AUR62008624 Chenopodium quinoa HOM05D007298 ORTHO05D009226 3.7e-42 176.0 241 49.0
ATR0068G085 Amborella trichopoda HOM05D007298 ORTHO05D009226 6.2e-42 175.3 329 41.0
C07p54880 Brassica napus HOM05D007298 ORTHO05D009226 1.1e-41 174.5 281 43.1
BolC7t45976H Brassica oleracea HOM05D007298 ORTHO05D009226 1.1e-41 174.5 281 43.1
AT4G26415 Arabidopsis thaliana HOM05D007298 ORTHO05D009226 1.4e-41 174.1 291 43.0
Thhalv10026008m.g Eutrema salsugineum HOM05D007298 ORTHO05D009226 1.4e-41 174.1 261 44.1
A03p56680 Brassica napus HOM05D007298 ORTHO05D009226 2.4e-41 173.3 280 42.9
BraA03t14738Z Brassica rapa HOM05D007298 ORTHO05D009226 2.4e-41 173.3 280 42.9
Duzib084G1143 Durio zibethinus HOM05D007298 ORTHO05D009226 2.4e-41 173.3 196 57.7
CARHR233970 Cardamine hirsuta HOM05D007298 ORTHO05D009226 3.1e-41 172.9 278 44.6
Cpa.g.sc119.13 Carica papaya HOM05D007298 ORTHO05D009226 6.9e-41 171.8 271 44.6
BcaC06g32750 Brassica carinata HOM05D007298 ORTHO05D009226 3.4e-40 169.5 260 43.1
SalBow2G0405 Salvia bowleyana HOM05D007298 ORTHO05D009226 1.0e-39 167.9 230 46.1
SalBow2G1404 Salvia bowleyana HOM05D007298 ORTHO05D009226 1.0e-39 167.9 230 46.1
RcHm_v2.0_Chr5g0084091 Rosa chinensis HOM05D007298 ORTHO05D009226 1.7e-39 167.2 324 40.4
AUR62033147 Chenopodium quinoa HOM05D007298 ORTHO05D009226 2.2e-39 166.8 233 48.1
AL7G26540 Arabidopsis lyrata HOM05D007298 ORTHO05D009226 3.8e-39 166.0 272 42.6
Sed0020092 Sechium edule HOM05D007298 ORTHO05D009226 3.8e-39 166.0 220 48.6
HanXRQChr12g0385721 Helianthus annuus HOM05D007298 ORTHO05D009226 4.9e-39 165.6 257 43.2
DCAR_006996 Daucus carota HOM05D007298 ORTHO05D009226 6.5e-39 165.2 261 43.3
EL10Ac4g07728 Beta vulgaris HOM05D007298 ORTHO05D009226 5.5e-38 162.2 243 45.3
BcaNung02423 Brassica carinata HOM05D007298 ORTHO05D009226 1.6e-37 160.6 274 42.7
FAN21G1139 Fragaria x ananassa HOM05D007298 ORTHO05D009226 6.7e-36 155.2 298 40.3
FAN11G2203 Fragaria x ananassa HOM05D007298 ORTHO05D009226 8.7e-36 154.8 297 40.7
FAN25G2175 Fragaria x ananassa HOM05D007298 ORTHO05D009226 4.3e-35 152.5 290 41.4
Prupe.6G001000 Prunus persica HOM05D007298 ORTHO05D009226 4.3e-35 152.5 285 41.1
Ah.08g213460 Amaranthus hybridus HOM05D007298 ORTHO05D009226 5.7e-35 152.1 232 43.5
CANSAT11G1103 Cannabis sativa HOM05D007298 ORTHO05D009226 5.3e-33 145.6 240 46.2
unitig_22.g6385 Utricularia gibba HOM05D007298 ORTHO05D009226 5.3e-33 145.6 198 47.0
DCAR_006994 Daucus carota HOM05D007298 ORTHO05D009226 6.9e-33 145.2 247 41.3
Zm00001eb127960 Zea mays HOM05D007298 ORTHO05D009226 1.0e-28 131.3 236 43.2
Glyma.15G076400 Glycine max HOM05D007298 ORTHO05D009226 3.4e-24 116.3 194 43.3
CDE07G0295 Ceratophyllum demersum HOM05D000114 ORTHO05D000038 1.6e-21 107.5 120 55.0
Glyma.13G237100 Glycine max HOM05D007298 ORTHO05D009226 1.3e-18 97.8 120 53.3
Phvul.006G183700 Phaseolus vulgaris HOM05D007298 ORTHO05D009226 5.9e-16 89.0 193 38.9
Nitab4.5_0000340g0060 Nicotiana tabacum HOM05D007298 ORTHO05D009226 5.3e-09 65.9 91 47.3
C01p22230 Brassica napus HOM05D007298 ORTHO05D009226 3.5e-08 63.2 104 37.5
BolC1t02153H Brassica oleracea HOM05D007298 ORTHO05D009226 3.5e-08 63.2 104 37.5
SEGI_13333 Sequoiadendron giganteum HOM05D007298 ORTHO05D009226 7.7e-08 62.0 156 34.6
BcaC09g50696 Brassica carinata HOM05D007298 ORTHO05D009226 1.7e-07 60.8 85 40.0


User provided reference genes

Program Settings