Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015759 Camellia sinensis var. sinensis HOM05D000344 ORTHO05D014129 1.9e-40 168.7 83 100.0
CSS0038447 Camellia sinensis var. sinensis HOM05D000344 ORTHO05D014129 2.1e-39 165.2 83 98.8
CSS0010351 Camellia sinensis var. sinensis HOM05D000344 ORTHO05D014129 5.0e-25 117.5 77 75.3
CSS0016122 Camellia sinensis var. sinensis HOM05D000344 ORTHO05D014129 8.5e-25 116.7 78 76.9
Hma1.2p1_0222F.1_g093490 Hydrangea macrophylla HOM05D000344 ORTHO05D005296 7.7e-18 93.6 57 77.2
Actinidia04295 Actinidia chinensis HOM05D000344 ORTHO05D005296 1.1e-16 89.7 57 77.2
Peaxi162Scf00252g00019 Petunia axillaris HOM05D000344 ORTHO05D005296 7.2e-16 87.0 56 69.6
Rhsim01G0034200 Rhododendron simsii HOM05D000344 ORTHO05D005296 9.4e-16 86.7 57 71.9
CANSAT11G2628 Cannabis sativa HOM05D000344 ORTHO05D005296 2.1e-15 85.5 53 75.5
Gohir.A05G052400 Gossypium hirsutum HOM05D000344 ORTHO05D005296 2.1e-15 85.5 53 71.7
GSVIVG01001910001 Vitis vinifera HOM05D000344 ORTHO05D005296 3.6e-15 84.7 53 75.5
Nitab4.5_0006879g0010 Nicotiana tabacum HOM05D000344 ORTHO05D005296 4.7e-15 84.3 56 69.6
Nitab4.5_0009049g0030 Nicotiana tabacum HOM05D000344 ORTHO05D005296 4.7e-15 84.3 56 69.6
Gohir.D05G053900 Gossypium hirsutum HOM05D000344 ORTHO05D005296 6.1e-15 84.0 53 71.7
CAN.G160.72 Capsicum annuum HOM05D000344 ORTHO05D005296 8.0e-15 83.6 57 68.4
Cfa020829 Carpinus fangiana HOM05D000344 ORTHO05D014129 8.0e-15 83.6 53 73.6
Cfa021217 Carpinus fangiana HOM05D000344 ORTHO05D005296 8.0e-15 83.6 53 73.6
Haze_19213 Corylus avellana HOM05D000344 ORTHO05D005296 8.0e-15 83.6 53 73.6
Gorai.009G055700 Gossypium raimondii HOM05D000344 ORTHO05D005296 8.0e-15 83.6 53 69.8
QL02p093136 Quercus lobata HOM05D000344 ORTHO05D005296 1.0e-14 83.2 76 56.6
CiPaw.16G113400 Carya illinoinensis HOM05D000344 ORTHO05D005296 1.4e-14 82.8 53 73.6
Duzib168G1790 Durio zibethinus HOM05D000344 ORTHO05D005296 1.8e-14 82.4 53 69.8
Manes.06G036300 Manihot esculenta HOM05D000344 ORTHO05D005296 2.3e-14 82.0 53 69.8
TWI34G1136 Tripterygium wilfordii HOM05D000344 ORTHO05D005296 2.3e-14 82.0 53 69.8
arahy.Tifrunner.gnm1.ann1.704TPP Arachis hypogaea HOM05D000344 ORTHO05D005296 5.2e-14 80.9 57 68.4
arahy.Tifrunner.gnm1.ann1.ALG29P Arachis hypogaea HOM05D000344 ORTHO05D005296 5.2e-14 80.9 57 68.4
Duzib150G1122 Durio zibethinus HOM05D000344 ORTHO05D005296 5.2e-14 80.9 53 67.9
DCAR_019390 Daucus carota HOM05D000344 ORTHO05D005296 6.8e-14 80.5 57 66.7
Duzib187G1763 Durio zibethinus HOM05D000344 ORTHO05D005296 6.8e-14 80.5 53 69.8
PGSC0003DMG400011136 Solanum tuberosum HOM05D000344 ORTHO05D005296 6.8e-14 80.5 56 64.3
Cc06_g15070 Coffea canephora HOM05D000344 ORTHO05D005296 1.2e-13 79.7 57 68.4
Solyc07g005530.4 Solanum lycopersicum HOM05D000344 ORTHO05D005296 1.2e-13 79.7 56 62.5
Sopen07g001630 Solanum pennellii HOM05D000344 ORTHO05D005296 1.2e-13 79.7 56 62.5
Oeu052192.1 Olea europaea HOM05D000344 ORTHO05D005296 2.6e-13 78.6 57 68.4
ClCG02G014550 Citrullus lanatus HOM05D000344 ORTHO05D005296 4.4e-13 77.8 53 66.0
Ciclev10007375m.g Citrus clementina HOM05D000344 ORTHO05D005296 5.7e-13 77.4 53 67.9
Thecc.09G031500 Theobroma cacao HOM05D000344 ORTHO05D005296 5.7e-13 77.4 53 64.2
Cc11_g03310 Coffea canephora HOM05D000344 ORTHO05D005296 7.5e-13 77.0 57 63.2
COL.COLO4_18799 Corchorus olitorius HOM05D000344 ORTHO05D005296 1.3e-12 76.3 53 66.0
MSTRG.10689 Avicennia marina HOM05D000344 ORTHO05D005296 1.7e-12 75.9 56 60.7
MD02G1008300 Malus domestica HOM05D000344 ORTHO05D005296 1.7e-12 75.9 53 62.3
Atru.chr7.119 Acer truncatum HOM05D000344 ORTHO05D005296 2.2e-12 75.5 53 66.0
Eucgr.C00353 Eucalyptus grandis HOM05D000344 ORTHO05D005296 2.2e-12 75.5 53 66.0
Glyma.17G074200 Glycine max HOM05D000344 ORTHO05D005296 2.2e-12 75.5 57 63.2
Prupe.7G262200 Prunus persica HOM05D000344 ORTHO05D005296 2.2e-12 75.5 53 62.3
TAR636G1075 Trochodendron aralioides HOM05D000344 ORTHO05D005296 2.2e-12 75.5 53 67.9
MD15G1152500 Malus domestica HOM05D000344 ORTHO05D005296 2.8e-12 75.1 53 60.4
Medtr4g130940 Medicago truncatula HOM05D000344 ORTHO05D005296 2.8e-12 75.1 53 64.2
Oeu027650.1 Olea europaea HOM05D000344 ORTHO05D005296 2.8e-12 75.1 57 61.4
SalBow1G0321 Salvia bowleyana HOM05D000344 ORTHO05D005296 2.8e-12 75.1 57 63.2
SalBow5G5380 Salvia bowleyana HOM05D000344 ORTHO05D005296 2.8e-12 75.1 57 61.4
Phvul.003G156400 Phaseolus vulgaris HOM05D000344 ORTHO05D005296 3.7e-12 74.7 57 63.2
Sabra18G0091500 Salix brachista HOM05D000344 ORTHO05D005296 3.7e-12 74.7 53 66.0
TAR625G0471 Trochodendron aralioides HOM05D000344 ORTHO05D005296 6.3e-12 73.9 53 66.0
Ca_21122_v3 Cicer arietinum L. HOM05D000344 ORTHO05D005296 8.3e-12 73.6 77 53.2
SGA_v2.0_scaffold12G05989 Striga asiatica HOM05D000344 ORTHO05D005296 8.3e-12 73.6 57 63.2
FAN23G2562 Fragaria x ananassa HOM05D000344 ORTHO05D005296 1.1e-11 73.2 57 59.6
FAN26G2818 Fragaria x ananassa HOM05D000344 ORTHO05D005296 1.1e-11 73.2 57 59.6
Lalb_Chr12g0198671 Lupinus albus HOM05D000344 ORTHO05D005296 1.4e-11 72.8 57 57.9
Sabra06G0140700 Salix brachista HOM05D000344 ORTHO05D005296 1.4e-11 72.8 53 64.2
Sed0018237 Sechium edule HOM05D000344 ORTHO05D005296 1.4e-11 72.8 53 62.3
CsaV3_2G007460 Cucumis sativus L. HOM05D000344 ORTHO05D005296 1.8e-11 72.4 53 62.3
PGR142G4209 Punica granatum HOM05D000344 ORTHO05D005296 1.8e-11 72.4 53 66.0
CDE02G1206 Ceratophyllum demersum HOM05D000344 ORTHO05D005296 2.4e-11 72.0 53 64.2
Gohir.D08G273300 Gossypium hirsutum HOM05D000344 ORTHO05D005296 2.4e-11 72.0 53 62.3
Gorai.004G291700 Gossypium raimondii HOM05D000344 ORTHO05D005296 2.4e-11 72.0 53 62.3
FvH4_1g01010 Fragaria vesca HOM05D000344 ORTHO05D005296 3.1e-11 71.6 57 56.1
Potri.018G107500 Populus trichocarpa HOM05D000344 ORTHO05D005296 3.1e-11 71.6 53 64.2
VMungo1215G2428 Vigna mungo HOM05D000344 ORTHO05D005296 3.1e-11 71.6 57 61.4
MELO3C004139.2 Cucumis melo HOM05D000344 ORTHO05D005296 4.1e-11 71.2 53 62.3
FAN28G1751 Fragaria x ananassa HOM05D000344 ORTHO05D005296 4.1e-11 71.2 57 56.1
Lalb_Chr13g0300881 Lupinus albus HOM05D000344 ORTHO05D005296 5.4e-11 70.9 57 57.9
Gohir.A08G251700 Gossypium hirsutum HOM05D000344 ORTHO05D005296 7.0e-11 70.5 53 62.3
Potri.006G185200 Populus trichocarpa HOM05D000344 ORTHO05D005296 7.0e-11 70.5 53 64.2
RcHm_v2.0_Chr2g0085751 Rosa chinensis HOM05D000344 ORTHO05D005296 1.6e-10 69.3 53 58.5
Lj4g0019888 Lotus japonicus HOM05D000344 ORTHO05D005296 4.5e-10 67.8 57 59.6
unitig_8.g3634 Utricularia gibba HOM05D000344 ORTHO05D005296 1.0e-09 66.6 57 57.9
Migut.K00330 Erythranthe guttata HOM05D000344 ORTHO05D005296 3.8e-09 64.7 57 54.4
Sc17g0006710 Simmondsia chinensis HOM05D000344 ORTHO05D005296 3.8e-09 64.7 54 59.3
Lj4g0022650 Lotus japonicus HOM05D000344 ORTHO05D005296 1.5e-08 62.8 57 57.9
Aqoxy1G03315 Aquilegia oxysepala HOM05D000344 ORTHO05D005296 1.9e-08 62.4 45 66.7
Os02g0795000 Oryza sativa ssp. japonica HOM05D000344 ORTHO05D005296 1.9e-08 62.4 54 53.7
Aqoxy7G03425 Aquilegia oxysepala HOM05D000344 ORTHO05D005296 4.2e-08 61.2 55 60.0
ATR0739G085 Amborella trichopoda HOM05D000344 ORTHO05D005296 9.4e-08 60.1 55 54.5
Ah.08g212460 Amaranthus hybridus HOM05D000344 ORTHO05D005296 1.2e-07 59.7 39 66.7
Aa31LG3G13780 Aethionema arabicum HOM05D000344 ORTHO05D005296 1.6e-07 59.3 57 52.6
Thhalv10012558m.g Eutrema salsugineum HOM05D000344 ORTHO05D005296 1.6e-07 59.3 54 53.7
EL10Ac7g17422 Beta vulgaris HOM05D000344 ORTHO05D005296 2.1e-07 58.9 44 65.9
AUR62008577 Chenopodium quinoa HOM05D000344 ORTHO05D005296 2.1e-07 58.9 36 72.2
AUR62034662 Chenopodium quinoa HOM05D000344 ORTHO05D005296 2.1e-07 58.9 36 72.2
AL8G34070 Arabidopsis lyrata HOM05D000344 ORTHO05D005296 4.7e-07 57.8 54 48.1
BcaB05g22390 Brassica carinata HOM05D000344 ORTHO05D005296 8.0e-07 57.0 56 51.8
TPR.G24857 Trifolium pratense HOM05D000344 ORTHO05D005296 8.0e-07 57.0 70 47.1
Aa31LG1G19290 Aethionema arabicum HOM05D003806 ORTHO05D004346 1.8e-06 55.8 57 50.9
Sp6g19650 Schrenkiella parvula HOM05D000344 ORTHO05D005296 1.8e-06 55.8 54 51.9
C03p14670 Brassica napus HOM05D000344 ORTHO05D005296 2.3e-06 55.5 55 50.9
BolC3t13908H Brassica oleracea HOM05D000344 ORTHO05D005296 2.3e-06 55.5 55 50.9
THA.LOC104811836 Tarenaya hassleriana HOM05D000344 ORTHO05D005296 3.0e-06 55.1 34 64.7
BraA02t05880Z Brassica rapa HOM05D000344 ORTHO05D005296 4.0e-06 54.7 55 50.9
BcaB01g04469 Brassica carinata HOM05D000344 ORTHO05D005296 5.2e-06 54.3 54 50.0
Zm00001eb374670 Zea mays HOM05D000344 ORTHO05D005296 6.8e-06 53.9 52 51.9


User provided reference genes

Program Settings