Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015750 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.6e-129 466.1 231 100.0
vmacro05035 Vaccinium macrocarpon HOM05D004613 ORTHO05D006095 5.3e-109 397.9 236 83.9
Cfa006537 Carpinus fangiana HOM05D004613 ORTHO05D006095 2.9e-107 392.1 228 82.9
Haze_04249 Corylus avellana HOM05D004613 ORTHO05D006095 5.0e-107 391.3 228 82.9
CiPaw.08G167100 Carya illinoinensis HOM05D004613 ORTHO05D006095 1.4e-106 389.8 228 82.0
Rhsim07G0179300 Rhododendron simsii HOM05D004613 ORTHO05D006095 6.7e-104 380.9 296 66.9
Ciclev10001987m.g Citrus clementina HOM05D004613 ORTHO05D006095 1.5e-103 379.8 231 78.4
Aqoxy2G03209 Aquilegia oxysepala HOM05D004613 ORTHO05D006095 3.3e-103 378.6 229 77.7
Thecc.05G300000 Theobroma cacao HOM05D004613 ORTHO05D006095 2.4e-101 372.5 229 76.9
Atru.chr2.494 Acer truncatum HOM05D004613 ORTHO05D006095 3.1e-101 372.1 246 73.6
RcHm_v2.0_Chr3g0454031 Rosa chinensis HOM05D004613 ORTHO05D006095 5.3e-101 371.3 228 78.1
Sc09g0003370 Simmondsia chinensis HOM05D004613 ORTHO05D006095 5.9e-100 367.9 231 77.1
Solyc01g098630.3 Solanum lycopersicum HOM05D004613 ORTHO05D006095 7.7e-100 367.5 223 77.6
TWI56G1338 Tripterygium wilfordii HOM05D004613 ORTHO05D006095 2.2e-99 365.9 228 78.5
Sopen01g042180 Solanum pennellii HOM05D004613 ORTHO05D006095 2.9e-99 365.5 223 77.1
MD12G1224400 Malus domestica HOM05D004613 ORTHO05D006095 3.8e-99 365.2 228 76.8
MSTRG.20469 Avicennia marina HOM05D004613 ORTHO05D006095 6.5e-99 364.4 218 79.8
ECA232G1001 Erigeron canadensis HOM05D004613 ORTHO05D006095 6.5e-99 364.4 226 76.5
PSO170G6761 Papaver somniferum HOM05D004613 ORTHO05D006095 6.5e-99 364.4 229 76.0
PSO407G0072 Papaver somniferum HOM05D004613 ORTHO05D006095 6.5e-99 364.4 229 76.0
Potri.013G026700 Populus trichocarpa HOM05D004613 ORTHO05D006095 6.5e-99 364.4 231 76.2
QL03p004304 Quercus lobata HOM05D004613 ORTHO05D006095 6.5e-99 364.4 261 69.3
Eucgr.B02002 Eucalyptus grandis HOM05D004613 ORTHO05D006095 3.2e-98 362.1 226 76.5
Migut.B01124 Erythranthe guttata HOM05D004613 ORTHO05D006095 5.5e-98 361.3 218 77.1
CANSAT54G0471 Cannabis sativa HOM05D004613 ORTHO05D006095 2.1e-97 359.4 231 74.5
Sed0016876 Sechium edule HOM05D004613 ORTHO05D006095 3.6e-97 358.6 228 75.4
HanXRQChr09g0258721 Helianthus annuus HOM05D004613 ORTHO05D006095 1.4e-96 356.7 216 79.2
Phvul.007G182600 Phaseolus vulgaris HOM05D004613 ORTHO05D006095 1.8e-96 356.3 228 76.3
FvH4_6g05290 Fragaria vesca HOM05D004613 ORTHO05D006095 2.3e-96 355.9 228 74.6
MELO3C015343.2 Cucumis melo HOM05D004613 ORTHO05D006095 6.7e-96 354.4 217 78.3
CsaV3_1G039190 Cucumis sativus L. HOM05D004613 ORTHO05D006095 6.7e-96 354.4 217 77.9
Lj5g0014952 Lotus japonicus HOM05D004613 ORTHO05D006095 2.0e-95 352.8 228 73.7
Gohir.A08G212400 Gossypium hirsutum HOM05D004613 ORTHO05D006095 2.6e-95 352.4 229 75.5
Gorai.004G243600 Gossypium raimondii HOM05D004613 ORTHO05D006095 7.5e-95 350.9 229 74.7
FAN14G3061 Fragaria x ananassa HOM05D004613 ORTHO05D006095 1.3e-94 350.1 228 74.6
Nitab4.5_0015025g0020 Nicotiana tabacum HOM05D004613 ORTHO05D006095 2.2e-94 349.4 225 74.7
VMungo0720G0951 Vigna mungo HOM05D004613 ORTHO05D006095 2.8e-94 349.0 220 78.2
Gohir.D08G229400 Gossypium hirsutum HOM05D004613 ORTHO05D006095 4.8e-94 348.2 228 74.6
FAN05G3359 Fragaria x ananassa HOM05D004613 ORTHO05D006095 1.1e-93 347.1 228 73.2
Thhalv10004565m.g Eutrema salsugineum HOM05D004613 ORTHO05D006095 1.4e-93 346.7 227 72.2
AT5G27395 Arabidopsis thaliana HOM05D004613 ORTHO05D006095 4.1e-93 345.1 231 72.3
FAN02G3501 Fragaria x ananassa HOM05D004613 ORTHO05D006095 4.1e-93 345.1 242 69.4
Sp2g20610 Schrenkiella parvula HOM05D004613 ORTHO05D006095 4.1e-93 345.1 230 71.7
ATR0626G318 Amborella trichopoda HOM05D004613 ORTHO05D006095 5.3e-93 344.7 214 76.6
FAN05G4103 Fragaria x ananassa HOM05D004613 ORTHO05D006095 5.3e-93 344.7 242 69.0
Nitab4.5_0004940g0150 Nicotiana tabacum HOM05D004613 ORTHO05D006095 5.3e-93 344.7 265 66.0
BcaNung02466 Brassica carinata HOM05D004613 ORTHO05D006095 7.0e-93 344.4 230 70.9
Aa31LG11G9160 Aethionema arabicum HOM05D004613 ORTHO05D006095 9.1e-93 344.0 232 72.4
AL6G39630 Arabidopsis lyrata HOM05D004613 ORTHO05D006095 9.1e-93 344.0 231 71.9
FAN09G4458 Fragaria x ananassa HOM05D004613 ORTHO05D006095 9.1e-93 344.0 228 71.9
CARHR185980 Cardamine hirsuta HOM05D004613 ORTHO05D006095 3.5e-92 342.0 231 71.4
FAN14G4578 Fragaria x ananassa HOM05D004613 ORTHO05D006095 3.5e-92 342.0 247 68.4
DCAR_015964 Daucus carota HOM05D004613 ORTHO05D006095 5.9e-92 341.3 217 76.0
GSVIVG01022058001 Vitis vinifera HOM05D004613 ORTHO05D006095 5.9e-92 341.3 197 80.2
EL10Ac4g09300 Beta vulgaris HOM05D004613 ORTHO05D006095 1.0e-91 340.5 228 71.1
BraA06t26679Z Brassica rapa HOM05D004613 ORTHO05D006095 1.0e-91 340.5 232 70.7
BcaNung04365 Brassica carinata HOM05D004613 ORTHO05D006095 1.7e-91 339.7 230 70.0
Carub.0006s2516 Capsella rubella HOM05D004613 ORTHO05D006095 1.7e-91 339.7 231 70.1
A06p37600 Brassica napus HOM05D004613 ORTHO05D006095 5.0e-91 338.2 230 69.6
arahy.Tifrunner.gnm1.ann1.R33V11 Arachis hypogaea HOM05D004613 ORTHO05D006095 1.5e-90 336.7 229 71.6
PGR083G0604 Punica granatum HOM05D004613 ORTHO05D006095 1.5e-90 336.7 228 69.7
BolC7t44599H Brassica oleracea HOM05D004613 ORTHO05D006095 4.2e-90 335.1 245 66.9
C07p40710 Brassica napus HOM05D004613 ORTHO05D006095 7.2e-90 334.3 245 66.5
Peaxi162Scf00434g00335 Petunia axillaris HOM05D004613 ORTHO05D006095 1.2e-89 333.6 225 72.0
Lsat_1_v5_gn_8_116060 Lactuca sativa HOM05D004613 ORTHO05D006095 4.7e-89 331.6 226 72.1
TPR.G2750 Trifolium pratense HOM05D004613 ORTHO05D006095 4.7e-89 331.6 229 70.7
THA.LOC104818675 Tarenaya hassleriana HOM05D004613 ORTHO05D006095 1.4e-88 330.1 219 70.8
CDE12G0359 Ceratophyllum demersum HOM05D004613 ORTHO05D006095 5.2e-88 328.2 205 73.2
TAR365G0571 Trochodendron aralioides HOM05D004613 ORTHO05D006095 7.5e-87 324.3 202 78.2
arahy.Tifrunner.gnm1.ann1.LT91QM Arachis hypogaea HOM05D004613 ORTHO05D006095 1.7e-86 323.2 253 64.8
Dinv40253 Davidia involucrata HOM05D004613 ORTHO05D006095 1.7e-86 323.2 193 83.9
Manes.09G163100 Manihot esculenta HOM05D004613 ORTHO05D006095 6.3e-86 321.2 204 77.0
Lalb_Chr02g0148411 Lupinus albus HOM05D004613 ORTHO05D006095 1.8e-85 319.7 230 67.8
Zm00001eb329390 Zea mays HOM05D004613 ORTHO05D006095 5.4e-85 318.2 225 66.2
Lj9A681T39 Lonicera japonica HOM05D004613 ORTHO05D006095 7.0e-85 317.8 174 86.8
Medtr1g082380 Medicago truncatula HOM05D004613 ORTHO05D006095 7.0e-85 317.8 230 67.0
Prupe.6G330700 Prunus persica HOM05D004613 ORTHO05D006095 1.6e-84 316.6 231 68.4
Duzib128G1218 Durio zibethinus HOM05D004613 ORTHO05D006095 3.3e-82 308.9 231 65.4
HPP92_006941 Vanilla planifolia HOM05D004613 ORTHO05D006095 1.2e-81 307.0 207 69.1
MBI17_g29025_MAGBIO Magnolia biondii HOM05D004613 ORTHO05D006095 2.8e-81 305.8 203 74.4
Glyma.20G231400 Glycine max HOM05D004613 ORTHO05D006095 2.2e-78 296.2 202 73.8
Nn1g02102 Nelumbo nucifera HOM05D004613 ORTHO05D006095 1.1e-77 293.9 204 70.1
PGR083G1611 Punica granatum HOM05D004613 ORTHO05D006095 5.4e-77 291.6 223 63.7
COL.COLO4_13522 Corchorus olitorius HOM05D004613 ORTHO05D006095 2.9e-75 285.8 204 71.6
Hund07039 Selenicereus undatus HOM05D004613 ORTHO05D006095 1.5e-74 283.5 231 64.1
Glyma.10G157300 Glycine max HOM05D004613 ORTHO05D006095 1.6e-68 263.5 228 61.4
SHI18214 Sapria himalayana HOM05D004613 ORTHO05D006095 7.8e-68 261.2 173 72.3
Cc02_g32610 Coffea canephora HOM05D004613 ORTHO05D006095 1.5e-63 246.9 156 76.3
ClCG03G016790 Citrullus lanatus HOM05D000665 ORTHO05D006095 1.6e-60 236.9 381 40.2
SalBow8G2842 Salvia bowleyana HOM05D004613 ORTHO05D006095 4.6e-60 235.3 223 53.8
CAN.G1134.17 Capsicum annuum HOM05D004613 ORTHO05D006095 6.0e-60 235.0 154 72.7
PGSC0003DMG400028600 Solanum tuberosum HOM05D004613 ORTHO05D006095 3.0e-59 232.6 154 72.1
Actinidia05726 Actinidia chinensis HOM05D004613 ORTHO05D006095 4.3e-58 228.8 154 75.3
Cpa.g.sc48.6 Carica papaya HOM05D004613 ORTHO05D006095 1.4e-56 223.8 200 60.5
Mapoly0007s0105 Marchantia polymorpha HOM05D004613 ORTHO05D006095 1.1e-53 214.2 221 47.5
SGA_v2.0_scaffold199G41179 Striga asiatica HOM05D004613 ORTHO05D006095 9.2e-53 211.1 262 49.6
BcaB04g19666 Brassica carinata HOM05D004613 ORTHO05D006095 2.7e-52 209.5 228 52.2
Pp3c24_5170 Physcomitrium patens HOM05D004613 ORTHO05D006095 3.5e-52 209.1 209 46.4
SEGI_25140 Sequoiadendron giganteum HOM05D004613 ORTHO05D006095 3.3e-50 202.6 155 63.9
SMO115G0217 Selaginella moellendorffii HOM05D004613 ORTHO05D006095 7.3e-50 201.4 200 49.0
Oeu012099.1 Olea europaea HOM05D004613 ORTHO05D006095 8.1e-49 198.0 126 76.2
AUR62000861 Chenopodium quinoa HOM05D004613 ORTHO05D006095 2.4e-45 186.4 155 61.9
CBR_g37761 Chara braunii HOM05D004613 ORTHO05D006095 3.2e-45 186.0 201 47.3
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 7.8e-44 181.4 239 46.9
MD04G1209800 Malus domestica HOM05D004613 ORTHO05D006095 4.2e-37 159.1 165 52.7
AUR62005113 Chenopodium quinoa HOM05D004613 ORTHO05D006095 7.3e-34 148.3 206 47.6
unitig_747.g21346 Utricularia gibba HOM05D004613 ORTHO05D006095 2.8e-33 146.4 160 48.1
unitig_747.g21345 Utricularia gibba HOM05D004613 ORTHO05D006095 3.2e-29 132.9 69 84.1
Cc02_g32600 Coffea canephora HOM05D004613 ORTHO05D006095 3.3e-26 122.9 69 75.4
MCO14G439 Micromonas commoda HOM05D004613 ORTHO05D006095 1.8e-24 117.1 206 33.5
MD04G1209900 Malus domestica HOM05D004613 ORTHO05D006095 3.8e-22 109.4 59 88.1
HanXRQChr13g0397031 Helianthus annuus HOM05D004613 ORTHO05D006095 3.0e-19 99.8 113 53.1
AagrBONN_evm.TU.Sc2ySwM_117.373 Anthoceros agrestis HOM05D004613 ORTHO05D006095 6.5e-14 82.0 91 42.9
CSS0002320 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 5.1e-11 72.4 38 89.5
CSS0009134 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 5.1e-11 72.4 38 89.5
CSS0011661 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 5.1e-11 72.4 38 89.5
CSS0019992 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 5.1e-11 72.4 38 89.5
CSS0023662 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 5.1e-11 72.4 38 89.5
CSS0033019 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 5.1e-11 72.4 38 89.5
CSS0041443 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 5.1e-11 72.4 38 89.5
A09p05250 Brassica napus HOM05D004613 ORTHO05D006095 1.1e-10 71.2 49 71.4
SEGI_04064 Sequoiadendron giganteum HOM05D004613 ORTHO05D006095 1.5e-10 70.9 52 57.7
C09p05710 Brassica napus HOM05D004613 ORTHO05D006095 1.9e-10 70.5 50 66.0
Cre02.g117300 Chlamydomonas reinhardtii HOM05D004613 ORTHO05D006095 3.7e-09 66.2 168 30.4
C04p20620 Brassica napus HOM05D000249 ORTHO05D032228 4.5e-07 59.3 30 73.3
BolC2t08054H Brassica oleracea HOM05D004613 ORTHO05D014940 2.2e-06 57.0 31 67.7
BolC4t23587H Brassica oleracea HOM05D004613 ORTHO05D006095 2.2e-06 57.0 56 48.2
BcaC02g11915 Brassica carinata HOM05D004613 ORTHO05D014940 5.0e-06 55.8 44 56.8


User provided reference genes

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