Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015745 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 1.1e-107 393.3 196 100.0
CSS0001709 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 8.3e-71 270.8 160 86.2
CSS0015899 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 9.2e-70 267.3 152 88.8
CSS0002085 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 1.2e-69 266.9 160 86.9
CSS0028889 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 3.5e-69 265.4 152 88.2
CSS0031993 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 3.1e-65 252.3 152 84.9
vmacro03558 Vaccinium macrocarpon HOM05D003515 ORTHO05D004347 1.5e-64 250.0 160 79.4
Rhsim13G0134000 Rhododendron simsii HOM05D003515 ORTHO05D004347 9.9e-64 247.3 160 79.4
RhsimUnG0176900 Rhododendron simsii HOM05D003515 ORTHO05D004347 9.9e-64 247.3 160 79.4
GSVIVG01012151001 Vitis vinifera HOM05D003515 ORTHO05D004347 3.7e-63 245.4 160 79.4
COL.COLO4_16231 Corchorus olitorius HOM05D003515 ORTHO05D004347 4.9e-63 245.0 161 79.5
Hma1.2p1_0088F.1_g045243 Hydrangea macrophylla HOM05D003515 ORTHO05D004347 8.3e-63 244.2 160 80.0
Haze_05267 Corylus avellana HOM05D003515 ORTHO05D004347 1.9e-62 243.0 150 82.7
Lj1C1149T14 Lonicera japonica HOM05D003515 ORTHO05D004347 4.1e-62 241.9 160 77.5
QL11p012061 Quercus lobata HOM05D003515 ORTHO05D004347 4.1e-62 241.9 161 78.9
TWI63G0015 Tripterygium wilfordii HOM05D003515 ORTHO05D004347 4.1e-62 241.9 160 78.1
Gohir.A05G245600 Gossypium hirsutum HOM05D003515 ORTHO05D004347 9.2e-62 240.7 161 77.0
Gohir.D05G247100 Gossypium hirsutum HOM05D003515 ORTHO05D004347 9.2e-62 240.7 161 77.0
Manes.03G074900 Manihot esculenta HOM05D003515 ORTHO05D004347 1.2e-61 240.4 161 78.3
Cfa001125 Carpinus fangiana HOM05D003515 ORTHO05D004347 1.6e-61 240.0 150 81.3
TAR624G0550 Trochodendron aralioides HOM05D003515 ORTHO05D004347 1.6e-61 240.0 160 78.8
Duzib132G1190 Durio zibethinus HOM05D003515 ORTHO05D004347 2.1e-61 239.6 161 78.3
Gorai.009G257800 Gossypium raimondii HOM05D003515 ORTHO05D004347 2.1e-61 239.6 161 76.4
Ciclev10014398m.g Citrus clementina HOM05D003515 ORTHO05D004347 4.6e-61 238.4 166 74.7
Thecc.02G003700 Theobroma cacao HOM05D003515 ORTHO05D004347 7.8e-61 237.7 161 77.6
PSO541G6439 Papaver somniferum HOM05D003515 ORTHO05D004347 1.3e-60 236.9 160 73.1
Nn7g38343 Nelumbo nucifera HOM05D003515 ORTHO05D004347 1.7e-60 236.5 160 76.2
EL10Ac7g17242 Beta vulgaris HOM05D003515 ORTHO05D004347 3.0e-60 235.7 160 75.6
CiPaw.10G105500 Carya illinoinensis HOM05D003515 ORTHO05D004347 6.6e-60 234.6 161 76.4
Prupe.4G118000 Prunus persica HOM05D003515 ORTHO05D004347 8.6e-60 234.2 161 77.0
Atru.chr10.315 Acer truncatum HOM05D003515 ORTHO05D004347 1.1e-59 233.8 160 76.9
MD10G1227200 Malus domestica HOM05D003515 ORTHO05D004347 1.1e-59 233.8 161 77.0
HanXRQChr14g0439721 Helianthus annuus HOM05D003515 ORTHO05D004347 1.5e-59 233.4 160 75.0
FAN16G1075 Fragaria x ananassa HOM05D003515 ORTHO05D004347 1.2e-58 230.3 161 75.2
FAN21G1878 Fragaria x ananassa HOM05D003515 ORTHO05D004347 1.2e-58 230.3 161 75.2
ECA238G0584 Erigeron canadensis HOM05D003515 ORTHO05D004347 1.6e-58 229.9 160 73.8
FAN11G3814 Fragaria x ananassa HOM05D003515 ORTHO05D004347 2.8e-58 229.2 161 74.5
RcHm_v2.0_Chr5g0021171 Rosa chinensis HOM05D003515 ORTHO05D004347 2.8e-58 229.2 161 75.2
Hma1.2p1_0088F.1_g045246 Hydrangea macrophylla HOM05D003515 ORTHO05D004347 3.6e-58 228.8 160 77.5
CANSAT35G1862 Cannabis sativa HOM05D003515 ORTHO05D004347 6.2e-58 228.0 161 75.2
Eucgr.D00012 Eucalyptus grandis HOM05D003515 ORTHO05D004347 8.1e-58 227.6 161 73.9
CsaV3_6G052970 Cucumis sativus L. HOM05D003515 ORTHO05D004347 4.0e-57 225.3 161 71.4
Migut.M02011 Erythranthe guttata HOM05D003515 ORTHO05D004347 8.9e-57 224.2 160 70.6
Sabra03G0110800 Salix brachista HOM05D003515 ORTHO05D004347 8.9e-57 224.2 160 71.2
AL8G14790 Arabidopsis lyrata HOM05D003515 ORTHO05D004347 1.2e-56 223.8 161 72.0
Dinv07004 Davidia involucrata HOM05D003515 ORTHO05D004347 1.2e-56 223.8 160 74.4
PGSC0003DMG401001013 Solanum tuberosum HOM05D003515 ORTHO05D004347 1.2e-56 223.8 160 71.9
AT5G44740 Arabidopsis thaliana HOM05D003515 ORTHO05D004347 1.5e-56 223.4 161 72.0
AUR62040332 Chenopodium quinoa HOM05D003515 ORTHO05D004347 1.5e-56 223.4 160 73.1
Oeu008987.4 Olea europaea HOM05D003515 ORTHO05D004347 1.5e-56 223.4 160 70.0
RcHm_v2.0_Chr5g0021201 Rosa chinensis HOM05D003515 ORTHO05D004347 1.5e-56 223.4 161 73.9
Ca_18232_v3 Cicer arietinum L. HOM05D003515 ORTHO05D004347 3.4e-56 222.2 161 70.2
Sopen01g017810 Solanum pennellii HOM05D003515 ORTHO05D004347 3.4e-56 222.2 160 71.2
ClCG01G025730 Citrullus lanatus HOM05D003515 ORTHO05D004347 4.4e-56 221.9 161 70.8
Nitab4.5_0000254g0140 Nicotiana tabacum HOM05D003515 ORTHO05D004347 5.8e-56 221.5 160 73.8
MELO3C007012.2 Cucumis melo HOM05D003515 ORTHO05D004347 7.6e-56 221.1 160 70.6
arahy.Tifrunner.gnm1.ann1.NQ3I2Y Arachis hypogaea HOM05D003515 ORTHO05D004347 1.7e-55 219.9 161 70.8
Carub.0008s0352 Capsella rubella HOM05D003515 ORTHO05D004347 2.9e-55 219.2 161 70.2
Cc09_g05170 Coffea canephora HOM05D003515 ORTHO05D004347 2.9e-55 219.2 160 70.6
Medtr4g094755 Medicago truncatula HOM05D003515 ORTHO05D004347 2.9e-55 219.2 161 69.6
Nitab4.5_0003190g0020 Nicotiana tabacum HOM05D003515 ORTHO05D004347 2.9e-55 219.2 160 71.9
Peaxi162Scf00151g00110 Petunia axillaris HOM05D003515 ORTHO05D004347 2.9e-55 219.2 160 71.2
Solyc01g034150.4 Solanum lycopersicum HOM05D003515 ORTHO05D004347 2.9e-55 219.2 160 70.6
CSS0046591 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 3.8e-55 218.8 223 58.3
Lalb_Chr13g0293411 Lupinus albus HOM05D003515 ORTHO05D004347 4.9e-55 218.4 161 69.6
BcaNung07103 Brassica carinata HOM05D003515 ORTHO05D004347 6.4e-55 218.0 161 70.2
Lsat_1_v5_gn_2_60141 Lactuca sativa HOM05D003515 ORTHO05D004347 6.4e-55 218.0 161 69.6
Thhalv10000807m.g Eutrema salsugineum HOM05D003515 ORTHO05D004347 8.4e-55 217.6 161 70.8
VMungo0251G3194 Vigna mungo HOM05D003515 ORTHO05D004347 8.4e-55 217.6 161 70.2
CAN.G391.1 Capsicum annuum HOM05D003515 ORTHO05D004347 1.1e-54 217.2 160 69.4
Psat7g087560 Pisum sativum HOM05D003515 ORTHO05D004347 1.1e-54 217.2 161 68.3
Aqoxy2G04030 Aquilegia oxysepala HOM05D003515 ORTHO05D004347 1.4e-54 216.9 160 66.2
Sp2g09580 Schrenkiella parvula HOM05D003515 ORTHO05D004347 1.4e-54 216.9 161 69.6
CARHR178160 Cardamine hirsuta HOM05D003515 ORTHO05D004347 1.9e-54 216.5 161 69.6
AUR62037879 Chenopodium quinoa HOM05D003515 ORTHO05D004347 2.4e-54 216.1 195 61.0
arahy.Tifrunner.gnm1.ann1.ZWBN17 Arachis hypogaea HOM05D003515 ORTHO05D004347 3.2e-54 215.7 161 69.6
Phvul.002G188000 Phaseolus vulgaris HOM05D003515 ORTHO05D004347 3.2e-54 215.7 161 68.9
PGR004G1774 Punica granatum HOM05D003515 ORTHO05D004347 3.2e-54 215.7 162 69.8
RcHm_v2.0_Chr4g0406921 Rosa chinensis HOM05D003515 ORTHO05D004347 3.2e-54 215.7 150 75.3
Glyma.08G088900 Glycine max HOM05D003515 ORTHO05D004347 9.2e-54 214.2 161 68.9
Aa31LG9G8430 Aethionema arabicum HOM05D003515 ORTHO05D004347 1.2e-53 213.8 157 68.8
ATR0763G272 Amborella trichopoda HOM05D003515 ORTHO05D004347 1.2e-53 213.8 149 69.8
Lj4g0010619 Lotus japonicus HOM05D003515 ORTHO05D004347 2.1e-53 213.0 161 68.3
RcHm_v2.0_Chr5g0021111 Rosa chinensis HOM05D003515 ORTHO05D004347 2.1e-53 213.0 164 72.0
SGA_v2.0_scaffold298G47708 Striga asiatica HOM05D003515 ORTHO05D004347 6.0e-53 211.5 148 73.6
A06p46940 Brassica napus HOM05D003515 ORTHO05D004347 7.8e-53 211.1 150 72.7
BraA06t27567Z Brassica rapa HOM05D003515 ORTHO05D004347 7.8e-53 211.1 150 72.7
SEGI_02016 Sequoiadendron giganteum HOM05D003515 ORTHO05D004347 1.0e-52 210.7 149 67.1
C07p27710 Brassica napus HOM05D003515 ORTHO05D004347 2.3e-52 209.5 150 72.0
BolC7t43303H Brassica oleracea HOM05D003515 ORTHO05D004347 2.3e-52 209.5 150 72.0
HPP92_014201 Vanilla planifolia HOM05D003515 ORTHO05D004347 1.1e-51 207.2 149 69.1
HPP92_026459 Vanilla planifolia HOM05D003515 ORTHO05D004347 1.1e-51 207.2 149 69.1
DCAR_007777 Daucus carota HOM05D003515 ORTHO05D004347 1.5e-51 206.8 200 57.0
THA.LOC104812921 Tarenaya hassleriana HOM05D003515 ORTHO05D004347 2.5e-51 206.1 161 65.2
Os01g0757800 Oryza sativa ssp. japonica HOM05D003515 ORTHO05D004347 1.2e-50 203.8 149 68.5
Sed0024374 Sechium edule HOM05D003515 ORTHO05D004347 2.1e-50 203.0 161 64.6
Zm00001eb303570 Zea mays HOM05D003515 ORTHO05D004347 9.0e-49 197.6 185 58.4
Zm00001eb388450 Zea mays HOM05D003515 ORTHO05D004347 9.0e-49 197.6 185 58.4
Zm00001eb441390 Zea mays HOM05D003515 ORTHO05D004347 9.0e-49 197.6 185 58.4
Zm00001eb441960 Zea mays HOM05D003515 ORTHO05D004347 9.0e-49 197.6 185 58.4
Zm00001eb440130 Zea mays HOM05D003515 ORTHO05D004347 2.6e-48 196.1 185 57.8
Zm00001eb277800 Zea mays HOM05D003515 ORTHO05D004347 5.8e-48 194.9 148 66.2
unitig_748.g8071 Utricularia gibba HOM05D003515 ORTHO05D004347 9.9e-48 194.1 160 63.8
Zm00001eb191750 Zea mays HOM05D003515 ORTHO05D004347 1.7e-47 193.4 148 65.5
Zm00001eb225590 Zea mays HOM05D003515 ORTHO05D004347 1.7e-47 193.4 148 65.5
Zm00001eb031780 Zea mays HOM05D003515 ORTHO05D004347 6.4e-47 191.4 148 65.5
Zm00001eb203100 Zea mays HOM05D003515 ORTHO05D004347 1.9e-46 189.9 185 56.8
HanXRQChr14g0439691 Helianthus annuus HOM05D003515 ORTHO05D004347 7.1e-46 188.0 122 77.9
Zm00001eb070690 Zea mays HOM05D003515 ORTHO05D004347 9.3e-46 187.6 150 63.3
BcaNung06821 Brassica carinata HOM05D003515 ORTHO05D004347 5.6e-43 178.3 156 62.8
Mapoly0100s0031 Marchantia polymorpha HOM05D003515 ORTHO05D004347 4.0e-41 172.2 185 50.8
CSS0006685 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 6.9e-41 171.4 93 94.6
AagrBONN_evm.TU.Sc2ySwM_228.4437 Anthoceros agrestis HOM05D003515 ORTHO05D004347 2.0e-40 169.9 162 56.2
Pp3c8_17250 Physcomitrium patens HOM05D003515 ORTHO05D004347 6.0e-37 158.3 148 56.8
SMO118G0165 Selaginella moellendorffii HOM05D003515 ORTHO05D004347 1.0e-36 157.5 163 53.4
TPR.G23817 Trifolium pratense HOM05D005903 ORTHO05D007293 1.8e-36 156.8 186 51.1
Ah.15g091880 Amaranthus hybridus HOM05D003515 ORTHO05D004347 9.6e-35 151.0 115 71.3
MSTRG.2877 Avicennia marina HOM05D003515 ORTHO05D004347 1.8e-33 146.7 92 79.3
CBR_g30567 Chara braunii HOM05D003515 ORTHO05D004347 1.2e-32 144.1 148 52.7
CSS0033549 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 9.9e-32 141.0 152 56.6
CSS0007738 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 2.2e-31 139.8 89 85.4
CDE06G0434 Ceratophyllum demersum HOM05D003515 ORTHO05D004347 2.2e-31 139.8 137 55.5
Cpa.g.sc30.112 Carica papaya HOM05D003515 ORTHO05D004347 2.5e-30 136.3 97 74.2
SHI28054 Sapria himalayana HOM05D003515 ORTHO05D004347 2.7e-29 132.9 91 73.6
Psat7g087520 Pisum sativum HOM05D003515 ORTHO05D004347 3.5e-29 132.5 180 46.1
FvH4_3g13010 Fragaria vesca HOM05D003515 ORTHO05D004347 1.5e-24 117.1 95 66.3
Zm00001eb371460 Zea mays HOM05D003515 ORTHO05D004347 2.5e-22 109.8 82 69.5
CSS0032916 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 5.5e-22 108.6 80 67.5
CSS0046652 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 3.0e-20 102.8 69 73.9
SHI28055 Sapria himalayana HOM05D003515 ORTHO05D004347 1.2e-16 90.9 82 58.5
Sc05g0004760 Simmondsia chinensis HOM05D003515 ORTHO05D004347 1.1e-14 84.3 72 63.9
PRCOL_00006902 Prasinoderma coloniale HOM05D003515 ORTHO05D004347 9.4e-14 81.3 186 33.9
Cre12.g524150 Chlamydomonas reinhardtii HOM05D003515 ORTHO05D004347 2.1e-13 80.1 75 56.0
TPR.G22047 Trifolium pratense HOM05D003515 ORTHO05D004347 2.1e-13 80.1 67 58.2
Zm00001eb152650 Zea mays HOM05D003515 ORTHO05D004347 1.5e-11 73.9 55 60.0
Zm00001eb409210 Zea mays HOM05D003515 ORTHO05D004347 1.5e-11 73.9 55 60.0
Pp3c14_23660 Physcomitrium patens HOM05D003515 ORTHO05D004347 1.4e-09 67.4 178 31.5
CDE06G0149 Ceratophyllum demersum HOM05D003515 ORTHO05D004347 1.2e-08 64.3 37 81.1
MCO03G362 Micromonas commoda HOM05D003515 ORTHO05D004347 2.9e-07 59.7 158 33.5
Mapoly0226s0007 Marchantia polymorpha HOM05D003515 ORTHO05D004347 1.4e-06 57.4 172 29.7


User provided reference genes

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