Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015718 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 2.1e-194 682.2 342 100.0
Thecc.04G143800 Theobroma cacao HOM05D004071 ORTHO05D004501 2.9e-151 538.9 346 78.3
Hma1.2p1_0550F.1_g177140 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 4.9e-151 538.1 343 79.3
CiPaw.04G003700 Carya illinoinensis HOM05D004071 ORTHO05D004501 1.0e-148 530.4 344 77.3
Cfa007968 Carpinus fangiana HOM05D004071 ORTHO05D004501 1.7e-148 529.6 347 77.5
Cc07_g04980 Coffea canephora HOM05D004071 ORTHO05D004501 2.5e-147 525.8 347 76.1
CiPaw.03G006000 Carya illinoinensis HOM05D004071 ORTHO05D004501 1.6e-146 523.1 347 76.9
COL.COLO4_04619 Corchorus olitorius HOM05D004071 ORTHO05D004501 2.8e-146 522.3 346 75.1
Ciclev10012116m.g Citrus clementina HOM05D004071 ORTHO05D004501 6.8e-145 517.7 347 76.1
Prupe.3G241500 Prunus persica HOM05D004071 ORTHO05D004501 1.2e-144 516.9 343 77.0
TPR.G9685 Trifolium pratense HOM05D004071 ORTHO05D004501 1.5e-144 516.5 347 73.2
Potri.004G104900 Populus trichocarpa HOM05D004071 ORTHO05D004501 3.4e-144 515.4 346 74.3
Gorai.001G082400 Gossypium raimondii HOM05D004071 ORTHO05D004501 7.5e-144 514.2 340 75.9
Gohir.D07G183200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.9e-143 512.3 346 73.7
MD17G1072900 Malus domestica HOM05D004071 ORTHO05D004501 2.9e-143 512.3 344 75.6
Gohir.A07G073300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 4.9e-143 511.5 340 74.1
Gorai.001G203600 Gossypium raimondii HOM05D004071 ORTHO05D004501 8.3e-143 510.8 346 73.1
Atru.chr10.1868 Acer truncatum HOM05D004071 ORTHO05D004501 1.1e-142 510.4 346 73.4
TAR622G0876 Trochodendron aralioides HOM05D004071 ORTHO05D004501 1.4e-142 510.0 336 75.0
Psat1g062200 Pisum sativum HOM05D004071 ORTHO05D004501 1.9e-142 509.6 348 72.1
Dinv34868 Davidia involucrata HOM05D004071 ORTHO05D004501 5.4e-142 508.1 343 76.1
Lsat_1_v5_gn_2_86560 Lactuca sativa HOM05D004071 ORTHO05D004501 9.2e-142 507.3 342 74.0
Oeu049330.1 Olea europaea HOM05D004071 ORTHO05D004501 1.2e-141 506.9 343 72.6
Gohir.D07G078000 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.6e-141 506.5 356 72.5
Manes.02G065500 Manihot esculenta HOM05D004071 ORTHO05D004501 2.7e-141 505.8 350 75.1
arahy.Tifrunner.gnm1.ann1.85GVTZ Arachis hypogaea HOM05D004071 ORTHO05D004501 3.0e-140 502.3 345 71.6
DCAR_007521 Daucus carota HOM05D000912 ORTHO05D004501 3.0e-140 502.3 338 71.6
Actinidia36304 Actinidia chinensis HOM05D004071 ORTHO05D004501 6.6e-140 501.1 342 74.6
CANSAT64G0921 Cannabis sativa HOM05D004071 ORTHO05D004501 8.6e-140 500.7 347 74.9
Gohir.A07G176100 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.5e-139 499.2 343 71.7
Actinidia26308 Actinidia chinensis HOM05D004071 ORTHO05D004501 3.3e-139 498.8 343 74.6
Lj2g0019369 Lotus japonicus HOM05D004071 ORTHO05D004501 3.3e-139 498.8 347 71.5
PGSC0003DMG400018768 Solanum tuberosum HOM05D004071 ORTHO05D004501 5.6e-139 498.0 347 72.3
Rhsim10G0064500 Rhododendron simsii HOM05D004071 ORTHO05D004501 7.3e-139 497.7 341 73.0
MBI16_g36053_MAGBIO Magnolia biondii HOM05D004071 ORTHO05D004501 1.2e-138 496.9 365 70.4
Glyma.13G047900 Glycine max HOM05D004071 ORTHO05D004501 2.1e-138 496.1 347 71.2
CAN.G153.14 Capsicum annuum HOM05D004071 ORTHO05D004501 6.2e-138 494.6 348 70.7
Duzib268G0320 Durio zibethinus HOM05D004071 ORTHO05D004501 6.2e-138 494.6 348 73.0
MD09G1082200 Malus domestica HOM05D004071 ORTHO05D004501 6.2e-138 494.6 341 73.3
Cpa.g.sc179.42 Carica papaya HOM05D004071 ORTHO05D004501 2.4e-137 492.7 343 73.5
MELO3C022067.2 Cucumis melo HOM05D004071 ORTHO05D004501 2.4e-137 492.7 347 71.5
CsaV3_5G039030 Cucumis sativus L. HOM05D004071 ORTHO05D004501 3.1e-137 492.3 346 71.4
Oeu025120.1 Olea europaea HOM05D004071 ORTHO05D004501 4.0e-137 491.9 344 71.2
Rhsim08G0080100 Rhododendron simsii HOM05D004071 ORTHO05D004501 5.2e-137 491.5 340 74.7
Medtr6g016780 Medicago truncatula HOM05D004071 ORTHO05D004501 8.9e-137 490.7 346 69.9
Oeu032872.2 Olea europaea HOM05D004071 ORTHO05D004501 1.2e-136 490.3 346 72.3
Peaxi162Scf01056g00238 Petunia axillaris HOM05D004071 ORTHO05D004501 5.8e-136 488.0 346 71.1
Sed0017773 Sechium edule HOM05D004071 ORTHO05D004501 5.8e-136 488.0 343 70.3
Migut.K00863 Erythranthe guttata HOM05D004071 ORTHO05D004501 9.9e-136 487.3 341 71.8
Ca_14084_v3 Cicer arietinum L. HOM05D004071 ORTHO05D004501 1.7e-135 486.5 345 68.4
CARHR076390 Cardamine hirsuta HOM05D004071 ORTHO05D004501 1.1e-134 483.8 341 71.0
Phvul.004G073300 Phaseolus vulgaris HOM05D004071 ORTHO05D004501 2.4e-134 482.6 346 70.5
ClCG11G005270 Citrullus lanatus HOM05D004071 ORTHO05D004501 3.2e-134 482.3 346 70.5
MSTRG.23829 Avicennia marina HOM05D004071 ORTHO05D004501 9.2e-134 480.7 346 70.8
Solyc03g045090.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 3.5e-133 478.8 346 71.4
HanXRQChr09g0263441 Helianthus annuus HOM05D004071 ORTHO05D004501 4.6e-133 478.4 338 71.3
Lsat_1_v5_gn_4_175840 Lactuca sativa HOM05D004071 ORTHO05D004501 4.6e-133 478.4 347 70.9
GSVIVG01036463001 Vitis vinifera HOM05D004071 ORTHO05D004501 7.8e-133 477.6 339 72.3
SalBow1G4702 Salvia bowleyana HOM05D004071 ORTHO05D004501 1.0e-132 477.2 347 68.9
TAR629G1013 Trochodendron aralioides HOM05D004071 ORTHO05D004501 3.0e-132 475.7 339 71.7
Nn3g17651 Nelumbo nucifera HOM05D004071 ORTHO05D004501 3.9e-132 475.3 339 69.9
THA.LOC104827150 Tarenaya hassleriana HOM05D004071 ORTHO05D004501 5.1e-132 474.9 340 70.3
SalBow1G4945 Salvia bowleyana HOM05D004071 ORTHO05D004501 8.6e-132 474.2 347 68.6
Aqoxy3G00414 Aquilegia oxysepala HOM05D004071 ORTHO05D004501 7.3e-131 471.1 343 67.3
vmacro18101 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 9.6e-131 470.7 342 72.5
SGA_v2.0_scaffold204G41658 Striga asiatica HOM05D004071 ORTHO05D004501 1.2e-130 470.3 344 69.2
PGR042G1023 Punica granatum HOM05D004071 ORTHO05D004501 2.8e-130 469.2 346 70.5
Lj4A130T17 Lonicera japonica HOM05D004071 ORTHO05D004501 3.6e-130 468.8 347 70.3
Sopen03g009550 Solanum pennellii HOM05D004071 ORTHO05D004501 3.6e-130 468.8 348 69.5
Gohir.A08G037600 Gossypium hirsutum HOM05D004071 ORTHO05D004501 4.7e-130 468.4 343 70.8
FAN09G0395 Fragaria x ananassa HOM05D000085 ORTHO05D004501 3.1e-129 465.7 343 67.9
Gohir.D08G047900 Gossypium hirsutum HOM05D004071 ORTHO05D004501 5.2e-129 464.9 343 70.0
Gorai.004G047400 Gossypium raimondii HOM05D004071 ORTHO05D004501 5.2e-129 464.9 343 70.3
Hma1.2p1_0136F.1_g061955 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 6.9e-129 464.5 304 78.3
arahy.Tifrunner.gnm1.ann1.SG5ZZ4 Arachis hypogaea HOM05D004071 ORTHO05D004501 2.6e-128 462.6 342 67.8
arahy.Tifrunner.gnm1.ann1.UUQR92 Arachis hypogaea HOM05D004071 ORTHO05D004501 2.6e-128 462.6 342 67.8
ECA232G0981 Erigeron canadensis HOM05D004071 ORTHO05D004501 4.4e-128 461.8 344 68.0
Sabra04G0076900 Salix brachista HOM05D004071 ORTHO05D004501 7.6e-128 461.1 445 58.2
Hund13742 Selenicereus undatus HOM05D004071 ORTHO05D004501 7.6e-128 461.1 349 69.1
HanXRQChr07g0200191 Helianthus annuus HOM05D004071 ORTHO05D004501 1.3e-127 460.3 343 67.3
PSO782G5396 Papaver somniferum HOM05D004071 ORTHO05D004501 1.7e-127 459.9 341 67.7
Migut.H00537 Erythranthe guttata HOM05D004071 ORTHO05D004501 3.8e-127 458.8 346 65.9
PSO063G1546 Papaver somniferum HOM05D004071 ORTHO05D004501 4.9e-127 458.4 340 67.9
CDE08G1388 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 2.4e-126 456.1 339 67.6
Sed0022702 Sechium edule HOM05D004071 ORTHO05D004501 1.2e-125 453.8 326 69.6
HPP92_011599 Vanilla planifolia HOM05D004071 ORTHO05D004501 1.2e-125 453.8 341 65.1
Zm00001eb161490 Zea mays HOM05D004071 ORTHO05D004501 1.6e-125 453.4 350 64.3
Os01g0604700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 3.5e-125 452.2 340 65.0
TWI74G0934 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 3.5e-125 452.2 345 69.3
Potri.017G110600 Populus trichocarpa HOM05D004071 ORTHO05D004501 6.0e-125 451.4 346 67.9
RcHm_v2.0_Chr2g0163461 Rosa chinensis HOM05D004071 ORTHO05D004501 6.0e-125 451.4 348 67.0
Duzib133G0960 Durio zibethinus HOM05D004071 ORTHO05D004501 1.3e-124 450.3 346 68.2
FAN05G3345 Fragaria x ananassa HOM05D004071 ORTHO05D004501 1.3e-124 450.3 343 66.5
EL10Ac2g04623 Beta vulgaris HOM05D004071 ORTHO05D004501 8.7e-124 447.6 346 66.2
CSS0021599 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 8.7e-124 447.6 271 85.2
FvH4_6g45520 Fragaria vesca HOM05D004071 ORTHO05D004501 1.9e-123 446.4 344 66.3
VMungo0464G1781 Vigna mungo HOM05D004071 ORTHO05D004501 2.5e-123 446.0 348 66.4
TWI77G0983 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 5.6e-123 444.9 346 68.2
FAN14G5468 Fragaria x ananassa HOM05D000085 ORTHO05D004501 7.3e-123 444.5 342 65.8
FAN02G1076 Fragaria x ananassa HOM05D000085 ORTHO05D004501 2.8e-122 442.6 342 65.5
SGA_v2.0_scaffold150G36618 Striga asiatica HOM05D002617 ORTHO05D009035 1.1e-121 440.7 342 67.0
Carub.0003s0151 Capsella rubella HOM05D004071 ORTHO05D004501 3.1e-121 439.1 344 65.4
BcaC05g30354 Brassica carinata HOM05D004071 ORTHO05D004501 1.5e-120 436.8 339 65.2
Ah.16g102220 Amaranthus hybridus HOM05D004071 ORTHO05D004501 1.1e-118 430.6 357 63.6
AT3G02420 Arabidopsis thaliana HOM05D004071 ORTHO05D004501 1.1e-118 430.6 344 64.2
HPP92_003788 Vanilla planifolia HOM05D004071 ORTHO05D004501 1.4e-118 430.3 337 62.6
Nitab4.5_0004420g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 1.9e-118 429.9 348 64.9
BraA05t23141Z Brassica rapa HOM05D004071 ORTHO05D004501 2.4e-118 429.5 338 63.6
AUR62008952 Chenopodium quinoa HOM05D004071 ORTHO05D004501 7.1e-118 427.9 345 62.6
Sp3g01460 Schrenkiella parvula HOM05D004071 ORTHO05D004501 9.3e-118 427.6 341 63.9
BcaB04g21412 Brassica carinata HOM05D004071 ORTHO05D004501 2.1e-117 426.4 341 63.6
Nn4g23653 Nelumbo nucifera HOM05D004071 ORTHO05D004501 2.7e-117 426.0 302 73.5
Thhalv10021061m.g Eutrema salsugineum HOM05D004071 ORTHO05D004501 1.0e-116 424.1 341 64.2
PSO017G6828 Papaver somniferum HOM05D004071 ORTHO05D004501 1.8e-116 423.3 342 61.7
Lalb_Chr17g0336551 Lupinus albus HOM05D004071 ORTHO05D004501 3.9e-116 422.2 343 64.4
BcaC09g47699 Brassica carinata HOM05D004071 ORTHO05D004501 8.7e-116 421.0 339 63.1
PSO478G0222 Papaver somniferum HOM05D004071 ORTHO05D004501 8.7e-116 421.0 342 59.9
Aa31LG5G12930 Aethionema arabicum HOM05D004071 ORTHO05D004501 2.5e-115 419.5 344 62.8
Hund16109 Selenicereus undatus HOM05D004071 ORTHO05D004501 4.3e-115 418.7 351 64.4
PGSC0003DMG400010091 Solanum tuberosum HOM05D004071 ORTHO05D004501 7.4e-115 417.9 348 63.2
CDE06G1497 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 2.8e-114 416.0 339 64.0
vmacro05581 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 1.4e-113 413.7 426 54.7
Os05g0589000 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 1.8e-113 413.3 347 61.1
ClCG05G012000 Citrullus lanatus HOM05D004071 ORTHO05D004501 2.4e-113 412.9 343 60.1
AUR62014550 Chenopodium quinoa HOM05D004071 ORTHO05D004501 2.0e-112 409.8 359 59.9
Sed0014814 Sechium edule HOM05D004071 ORTHO05D004501 2.4e-110 402.9 343 57.7
unitig_62.g23397 Utricularia gibba HOM05D004071 ORTHO05D004501 5.5e-110 401.7 349 60.7
TAR371G1199 Trochodendron aralioides HOM05D004071 ORTHO05D004501 2.7e-109 399.4 295 70.5
PGR004G2426 Punica granatum HOM05D004071 ORTHO05D004501 3.5e-109 399.1 292 70.2
Zm00001eb297500 Zea mays HOM05D004071 ORTHO05D004501 1.3e-108 397.1 341 58.7
Glyma.19G043700 Glycine max HOM05D004071 ORTHO05D004501 1.6e-106 390.2 291 68.4
unitig_32.g10761 Utricularia gibba HOM05D004071 ORTHO05D004501 1.1e-102 377.5 342 56.7
SEGI_38032 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 2.5e-102 376.3 335 56.1
Nitab4.5_0009272g0060 Nicotiana tabacum HOM05D004071 ORTHO05D004501 7.9e-101 371.3 359 58.5
AL3G11710 Arabidopsis lyrata HOM05D004071 ORTHO05D004501 4.8e-98 362.1 294 65.0
BolC5t35082H Brassica oleracea HOM05D004071 ORTHO05D007018 1.6e-93 347.1 289 62.6
Eucgr.I02122 Eucalyptus grandis HOM05D004071 ORTHO05D004501 1.7e-90 337.0 243 72.0
arahy.Tifrunner.gnm1.ann1.2VHL38 Arachis hypogaea HOM05D004071 ORTHO05D004501 9.1e-89 331.3 243 68.7
Peaxi162Scf00479g00310 Petunia axillaris HOM05D004071 ORTHO05D004501 7.7e-88 328.2 299 61.5
C09p75710 Brassica napus HOM05D002308 ORTHO05D002535 5.0e-87 325.5 275 61.8
QL02p053393 Quercus lobata HOM05D004071 ORTHO05D004501 6.5e-87 325.1 246 71.5
Lj7A9T84 Lonicera japonica HOM05D004071 ORTHO05D004501 8.5e-87 324.7 224 76.8
Gohir.A13G091200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 7.9e-85 318.2 240 69.6
ATR0730G004 Amborella trichopoda HOM05D004071 ORTHO05D004501 1.8e-84 317.0 276 59.8
A05p45210 Brassica napus HOM05D002308 ORTHO05D007018 1.8e-84 317.0 275 61.5
AagrBONN_evm.TU.Sc2ySwM_117.1813 Anthoceros agrestis HOM05D004071 ORTHO05D004501 5.1e-84 315.5 335 47.5
Sc10g0001400 Simmondsia chinensis HOM05D004071 ORTHO05D004501 6.7e-84 315.1 242 68.6
Dinv33918 Davidia involucrata HOM05D004071 ORTHO05D004501 2.8e-82 309.7 187 82.9
Mapoly0013s0171 Marchantia polymorpha HOM05D004071 ORTHO05D004501 6.9e-81 305.1 336 44.6
SMO164G0101 Selaginella moellendorffii HOM05D004071 ORTHO05D004501 9.1e-81 304.7 337 47.8
Nitab4.5_0000612g0160 Nicotiana tabacum HOM05D004071 ORTHO05D004501 1.5e-80 303.9 348 50.9
Zm00001eb158750 Zea mays HOM05D004071 ORTHO05D004501 2.7e-77 293.1 276 53.3
Os01g0641700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 3.0e-76 289.7 276 54.0
Pp3c7_9290 Physcomitrium patens HOM05D004071 ORTHO05D004501 1.7e-74 283.9 337 42.1
BraSC141t45626Z Brassica rapa HOM05D004071 ORTHO05D004501 1.1e-73 281.2 236 61.4
BolC1t05906H Brassica oleracea HOM05D004071 ORTHO05D004501 5.5e-70 268.9 240 59.6
BNapus_Darmor_BZH_scaffold_208p00070 Brassica napus HOM05D004071 ORTHO05D004501 1.0e-68 264.6 236 58.9
DCAR_010977 Daucus carota HOM05D004071 ORTHO05D004501 3.3e-67 259.6 335 46.0
TPR.G28780 Trifolium pratense HOM05D004071 ORTHO05D004501 2.4e-65 253.4 145 81.4
CDE05G2628 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 4.5e-64 249.2 279 47.0
SHI25579 Sapria himalayana HOM05D004071 ORTHO05D004501 3.4e-59 233.0 273 50.5
Nitab4.5_0003161g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 9.1e-57 224.9 130 81.5
Gohir.A03G111050 Gossypium hirsutum HOM05D004071 ORTHO05D004501 5.0e-47 192.6 140 69.3
Dinv33917 Davidia involucrata HOM05D004071 ORTHO05D004501 6.8e-44 182.2 115 84.3
QL02p053385 Quercus lobata HOM05D004071 ORTHO05D004501 1.5e-43 181.0 102 82.4
Gohir.A04G081800 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.1e-38 164.9 117 71.8
Gohir.A13G168300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 5.6e-38 162.5 114 71.1
unitig_52.g17623 Utricularia gibba HOM05D004071 ORTHO05D004501 2.8e-37 160.2 143 59.4
Actinidia17620 Actinidia chinensis HOM05D004071 ORTHO05D004501 6.6e-31 139.0 75 84.0
Solyc02g089780.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 4.6e-24 116.3 343 26.5
CBR_g39496 Chara braunii HOM05D004071 ORTHO05D004501 9.5e-22 108.6 160 33.8
SEGI_19153 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 4.9e-18 96.3 54 70.4
Gohir.A10G225466 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.6e-16 91.3 54 79.6
arahy.Tifrunner.gnm1.ann1.FI956K Arachis hypogaea HOM05D004071 ORTHO05D004501 7.6e-11 72.4 97 40.2
BcaC02g08620 Brassica carinata HOM05D004071 ORTHO05D004501 7.1e-09 65.9 38 78.9
Haze_14102 Corylus avellana HOM05D004071 ORTHO05D004501 1.6e-08 64.7 75 54.7
HanXRQChr02g0053871 Helianthus annuus HOM05D004071 ORTHO05D004501 5.1e-07 59.7 103 36.9


User provided reference genes

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