Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015713 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 4.5e-221 771.2 450 100.0
CSS0026746 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 4.2e-142 508.8 446 69.7
Dinv31355 Davidia involucrata HOM05D005934 ORTHO05D005165 8.7e-140 501.1 471 70.1
CSS0046829 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 4.5e-136 488.8 446 69.7
Atru.chr12.720 Acer truncatum HOM05D005934 ORTHO05D005165 3.7e-130 469.2 462 62.8
RcHm_v2.0_Chr1g0363881 Rosa chinensis HOM05D005934 ORTHO05D005165 3.7e-130 469.2 464 63.8
Duzib114G0889 Durio zibethinus HOM05D005934 ORTHO05D005165 6.2e-130 468.4 461 62.5
QL08p056591 Quercus lobata HOM05D005934 ORTHO05D005165 8.2e-130 468.0 472 60.8
MD01G1111100 Malus domestica HOM05D005934 ORTHO05D005165 1.1e-129 467.6 469 61.6
TWI38G0616 Tripterygium wilfordii HOM05D005934 ORTHO05D005165 4.0e-129 465.7 465 61.5
Ciclev10031457m.g Citrus clementina HOM05D005934 ORTHO05D005165 2.6e-128 463.0 465 66.9
vmacro07085 Vaccinium macrocarpon HOM05D005934 ORTHO05D005165 8.4e-127 458.0 656 50.0
FvH4_7g19882 Fragaria vesca HOM05D005934 ORTHO05D005165 3.2e-126 456.1 466 60.5
FAN03G0840 Fragaria x ananassa HOM05D005934 ORTHO05D005165 1.6e-125 453.8 466 59.9
FAN10G0472 Fragaria x ananassa HOM05D005934 ORTHO05D005165 3.0e-124 449.5 462 60.0
CANSAT56G0550 Cannabis sativa HOM05D005934 ORTHO05D005165 2.5e-123 446.4 461 60.3
Gorai.009G314800 Gossypium raimondii HOM05D005934 ORTHO05D005165 4.3e-123 445.7 449 61.9
Gohir.A05G345500 Gossypium hirsutum HOM05D005934 ORTHO05D005165 5.7e-123 445.3 449 61.0
Gohir.D05G297500 Gossypium hirsutum HOM05D005934 ORTHO05D005165 1.3e-122 444.1 449 61.7
Prupe.2G216000 Prunus persica HOM05D005934 ORTHO05D005165 8.2e-122 441.4 454 60.1
TWI63G0603 Tripterygium wilfordii HOM05D005934 ORTHO05D005165 1.4e-121 440.7 464 60.8
Gohir.A05G297600 Gossypium hirsutum HOM05D005934 ORTHO05D005165 1.8e-121 440.3 448 60.9
Dinv11795 Davidia involucrata HOM05D005934 ORTHO05D005165 3.4e-120 436.0 451 67.8
Gohir.D04G084700 Gossypium hirsutum HOM05D005934 ORTHO05D005165 4.5e-120 435.6 449 60.4
PGR142G2623 Punica granatum HOM05D005934 ORTHO05D005165 7.7e-120 434.9 452 61.1
Haze_16922 Corylus avellana HOM05D005934 ORTHO05D005165 1.0e-119 434.5 467 57.6
FAN01G0846 Fragaria x ananassa HOM05D005934 ORTHO05D005165 4.2e-118 429.1 456 58.8
TAR636G3344 Trochodendron aralioides HOM05D005934 ORTHO05D005165 1.2e-117 427.6 483 60.0
FAN01G1479 Fragaria x ananassa HOM05D005934 ORTHO05D005165 2.7e-117 426.4 447 59.5
Cpa.g.sc53.46 Carica papaya HOM05D005934 ORTHO05D005165 3.6e-117 426.0 470 59.1
Eucgr.G02812 Eucalyptus grandis HOM05D005934 ORTHO05D005165 3.6e-117 426.0 453 59.6
MD07G1177300 Malus domestica HOM05D005934 ORTHO05D005165 6.1e-117 425.2 468 57.3
COL.COLO4_23717 Corchorus olitorius HOM05D005934 ORTHO05D005165 1.0e-116 424.5 451 60.1
GSVIVG01016314001 Vitis vinifera HOM05D005934 ORTHO05D005165 5.1e-116 422.2 448 64.5
Manes.10G044200 Manihot esculenta HOM05D005934 ORTHO05D005165 1.1e-115 421.0 446 61.2
Phvul.007G092600 Phaseolus vulgaris HOM05D005934 ORTHO05D005165 1.5e-115 420.6 445 57.8
arahy.Tifrunner.gnm1.ann1.H195MC Arachis hypogaea HOM05D005934 ORTHO05D005165 3.3e-115 419.5 451 58.5
Nitab4.5_0008994g0010 Nicotiana tabacum HOM05D005934 ORTHO05D005165 2.2e-114 416.8 452 59.3
Thecc.10G070000 Theobroma cacao HOM05D005934 ORTHO05D005165 5.3e-113 412.1 457 59.7
TPR.G1756 Trifolium pratense HOM05D005934 ORTHO05D005165 5.3e-113 412.1 451 59.2
Lj5g0021458 Lotus japonicus HOM05D005934 ORTHO05D005165 2.6e-112 409.8 475 56.6
Nitab4.5_0000233g0170 Nicotiana tabacum HOM05D005934 ORTHO05D005165 4.5e-112 409.1 452 58.6
Medtr1g095640 Medicago truncatula HOM05D005934 ORTHO05D005165 8.5e-111 404.8 446 57.4
arahy.Tifrunner.gnm1.ann1.W2M3W6 Arachis hypogaea HOM05D005934 ORTHO05D005165 3.6e-109 399.4 452 57.1
ECA238G0735 Erigeron canadensis HOM05D005934 ORTHO05D005165 6.1e-109 398.7 451 62.7
Ca_10584_v3 Cicer arietinum L. HOM05D005934 ORTHO05D005165 3.9e-108 396.0 453 56.5
Sp6g12980 Schrenkiella parvula HOM05D005934 ORTHO05D005165 1.7e-106 390.6 449 56.1
C03p19490 Brassica napus HOM05D005934 ORTHO05D005165 3.7e-106 389.4 454 55.1
BolC3t14330H Brassica oleracea HOM05D005934 ORTHO05D005165 8.2e-106 388.3 457 55.1
Sc09g0006590 Simmondsia chinensis HOM05D005934 ORTHO05D005165 1.1e-105 387.9 458 58.3
Carub.0008s1083 Capsella rubella HOM05D005934 ORTHO05D005165 1.8e-105 387.1 451 56.3
Potri.010G219700 Populus trichocarpa HOM05D005934 ORTHO05D005165 3.1e-105 386.3 465 59.8
Thhalv10013687m.g Eutrema salsugineum HOM05D005934 ORTHO05D005165 9.1e-105 384.8 447 55.9
AL8G25010 Arabidopsis lyrata HOM05D005934 ORTHO05D005165 1.2e-104 384.4 443 55.8
Lalb_Chr02g0141961 Lupinus albus HOM05D005934 ORTHO05D005165 1.5e-104 384.0 445 59.3
EL10Ac2g03586 Beta vulgaris HOM05D005934 ORTHO05D005165 2.0e-104 383.6 492 52.2
A03p16560 Brassica napus HOM05D005934 ORTHO05D005165 4.5e-104 382.5 438 55.9
BraA03t10943Z Brassica rapa HOM05D005934 ORTHO05D005165 4.5e-104 382.5 438 55.9
CiPaw.02G175500 Carya illinoinensis HOM05D005934 ORTHO05D005165 4.5e-104 382.5 335 67.8
PSO339G5008 Papaver somniferum HOM05D005934 ORTHO05D005165 5.9e-104 382.1 470 54.5
HanXRQChr11g0323311 Helianthus annuus HOM05D005934 ORTHO05D005165 7.7e-104 381.7 458 59.2
VMungo0720G0064 Vigna mungo HOM05D005934 ORTHO05D005165 1.7e-103 380.6 409 57.2
MSTRG.27465 Avicennia marina HOM05D005934 ORTHO05D005165 2.2e-103 380.2 437 56.8
PSO541G4936 Papaver somniferum HOM05D005934 ORTHO05D005165 1.4e-102 377.5 472 53.2
Sabra10G0169500 Salix brachista HOM05D005934 ORTHO05D005165 1.4e-102 377.5 466 59.0
Sed0003296 Sechium edule HOM05D005934 ORTHO05D005165 5.5e-102 375.6 463 53.3
AT5G50840 Arabidopsis thaliana HOM05D005934 ORTHO05D005165 1.6e-101 374.0 446 54.9
Solyc04g047750.3 Solanum lycopersicum HOM05D005934 ORTHO05D005165 1.6e-101 374.0 446 54.5
Sopen04g017890 Solanum pennellii HOM05D005934 ORTHO05D005165 6.1e-101 372.1 446 54.5
Migut.F01993 Erythranthe guttata HOM05D005934 ORTHO05D005165 1.0e-100 371.3 445 56.0
CAN.G471.3 Capsicum annuum HOM05D005934 ORTHO05D005165 1.4e-100 370.9 447 53.7
Glyma.20G178100 Glycine max HOM05D005934 ORTHO05D005165 2.3e-100 370.2 449 53.2
HanXRQChr14g0457271 Helianthus annuus HOM05D005934 ORTHO05D005165 2.3e-100 370.2 464 59.1
CARHR257410 Cardamine hirsuta HOM05D005934 ORTHO05D005165 3.0e-100 369.8 448 54.0
Psat6g182920 Pisum sativum HOM05D005934 ORTHO05D005165 3.0e-100 369.8 452 54.9
Oeu043928.1 Olea europaea HOM05D005934 ORTHO05D005165 1.5e-99 367.5 449 58.4
ClCG09G020550 Citrullus lanatus HOM05D005934 ORTHO05D005165 2.0e-99 367.1 466 52.8
Gorai.012G094400 Gossypium raimondii HOM05D005934 ORTHO05D005165 2.6e-99 366.7 367 62.4
Cc02_g11420 Coffea canephora HOM05D005934 ORTHO05D005165 1.1e-97 361.3 440 56.1
Aqoxy2G01769 Aquilegia oxysepala HOM05D005934 ORTHO05D005165 3.1e-97 359.8 450 53.6
BolC2t08210H Brassica oleracea HOM05D005934 ORTHO05D005165 1.2e-96 357.8 445 52.6
Ah.11g043450 Amaranthus hybridus HOM05D005934 ORTHO05D005165 2.6e-96 356.7 436 53.9
Lsat_1_v5_gn_2_113761 Lactuca sativa HOM05D005934 ORTHO05D005165 3.5e-96 356.3 454 58.4
C02p20680 Brassica napus HOM05D005934 ORTHO05D005165 4.5e-96 355.9 421 53.9
BcaC03g14634 Brassica carinata HOM05D005934 ORTHO05D005165 5.9e-96 355.5 430 53.5
BcaB05g24030 Brassica carinata HOM05D005934 ORTHO05D005165 7.7e-96 355.1 444 52.3
TAR633G0441 Trochodendron aralioides HOM05D005934 ORTHO05D005165 7.7e-96 355.1 464 56.9
unitig_899.g14449 Utricularia gibba HOM05D005934 ORTHO05D005165 2.7e-93 346.7 450 51.1
SGA_v2.0_scaffold13G06359 Striga asiatica HOM05D005934 ORTHO05D005165 3.6e-93 346.3 448 54.2
AUR62027949 Chenopodium quinoa HOM05D005934 ORTHO05D005165 3.0e-92 343.2 524 47.3
THA.LOC104819151 Tarenaya hassleriana HOM05D005934 ORTHO05D005165 8.8e-92 341.7 437 58.4
BraA02t06319Z Brassica rapa HOM05D005934 ORTHO05D005165 1.2e-91 341.3 436 51.1
A02p12610 Brassica napus HOM05D005934 ORTHO05D005165 1.3e-87 327.8 432 50.5
CsaV3_5G025820 Cucumis sativus L. HOM05D005934 ORTHO05D005165 1.3e-87 327.8 463 55.3
AUR62020763 Chenopodium quinoa HOM05D005934 ORTHO05D005165 8.8e-84 315.1 467 48.4
ATR0759G024 Amborella trichopoda HOM05D005934 ORTHO05D005165 2.2e-82 310.5 518 43.1
Os03g0288600 Oryza sativa ssp. japonica HOM05D005934 ORTHO05D005165 1.6e-80 304.3 447 45.2
Actinidia38257 Actinidia chinensis HOM05D005934 ORTHO05D005165 4.2e-78 296.2 501 50.9
MELO3C002886.2 Cucumis melo HOM05D005934 ORTHO05D005165 3.6e-77 293.1 309 68.0
Aa31LG3G7310 Aethionema arabicum HOM05D005934 ORTHO05D005165 8.0e-77 292.0 438 54.3
Hund19343 Selenicereus undatus HOM05D005934 ORTHO05D005165 2.8e-74 283.5 443 46.0
Zm00001eb397090 Zea mays HOM05D005934 ORTHO05D005165 3.2e-73 280.0 436 44.3
DCAR_003640 Daucus carota HOM05D005934 ORTHO05D005165 1.1e-70 271.6 228 76.8
Zm00001eb013240 Zea mays HOM05D005934 ORTHO05D005165 3.4e-67 260.0 438 46.1
Aa31LG3G7290 Aethionema arabicum HOM05D005934 ORTHO05D005165 4.4e-67 259.6 355 49.9
Lj1C919T16 Lonicera japonica HOM05D005934 ORTHO05D005165 2.4e-65 253.8 261 61.7
MBI05_g20541_MAGBIO Magnolia biondii HOM05D005934 ORTHO05D005165 7.5e-59 232.3 486 46.1
Hund22502 Selenicereus undatus HOM05D005934 ORTHO05D005165 1.7e-58 231.1 302 60.6
SMO201G0134 Selaginella moellendorffii HOM05D005934 ORTHO05D005165 1.9e-49 201.1 251 46.6
Mapoly0007s0101 Marchantia polymorpha HOM05D005934 ORTHO05D005165 6.8e-44 182.6 402 36.8
CBR_g15990 Chara braunii HOM05D005934 ORTHO05D005165 8.4e-42 175.6 332 38.6
THA.LOC104819150 Tarenaya hassleriana HOM05D005934 ORTHO05D005165 5.6e-38 162.9 174 74.7
Pp3c11_23150 Physcomitrium patens HOM05D005934 ORTHO05D005165 2.9e-34 150.6 382 36.4
HPP92_006750 Vanilla planifolia HOM05D005934 ORTHO05D005165 1.1e-33 148.7 260 44.6
Peaxi162Scf00108g01217 Petunia axillaris HOM05D005934 ORTHO05D005165 1.5e-27 128.3 368 34.5
Lsat_1_v5_gn_1_128800 Lactuca sativa HOM05D005934 ORTHO05D005165 4.5e-27 126.7 194 59.8
BraA03t13391Z Brassica rapa HOM05D005934 ORTHO05D005165 3.2e-25 120.6 207 45.4
A03p42390 Brassica napus HOM05D005934 ORTHO05D005165 4.2e-25 120.2 207 45.4
Actinidia03037 Actinidia chinensis HOM05D005934 ORTHO05D005165 3.7e-21 107.1 156 50.0
Actinidia03038 Actinidia chinensis HOM05D005934 ORTHO05D005165 1.4e-20 105.1 157 63.7
Peaxi162Scf00108g01212 Petunia axillaris HOM05D005934 ORTHO05D005165 3.1e-20 104.0 162 61.7
Nn2g10703 Nelumbo nucifera HOM05D005934 ORTHO05D005165 2.5e-14 84.3 87 56.3
MCO09G455 Micromonas commoda HOM05D005934 ORTHO05D005165 3.3e-14 84.0 274 31.0
Medtr1g101870 Medicago truncatula HOM05D000280 ORTHO05D000632 6.9e-12 76.3 50 80.0
SalBow4G0998 Salvia bowleyana HOM05D011515 ORTHO05D005165 1.0e-10 72.4 90 45.6
SalBow4G2489 Salvia bowleyana HOM05D011515 ORTHO05D005165 1.0e-10 72.4 90 45.6
Nn2g10701 Nelumbo nucifera HOM05D005934 ORTHO05D005165 1.7e-10 71.6 190 34.7
Hund22503 Selenicereus undatus HOM05D005934 ORTHO05D005165 2.2e-10 71.2 148 36.5
Cre12.g546300 Chlamydomonas reinhardtii HOM05D005934 ORTHO05D005165 1.9e-09 68.2 245 29.4
HPP92_006751 Vanilla planifolia HOM05D005934 ORTHO05D005165 2.1e-08 64.7 47 72.3


User provided reference genes

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