Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015630 Camellia sinensis var. sinensis HOM05D006214 ORTHO05D007723 2.9e-96 355.1 170 100.0
CSS0049547 Camellia sinensis var. sinensis HOM05D006214 ORTHO05D007723 2.9e-96 355.1 170 100.0
Dinv30243 Davidia involucrata HOM05D006214 ORTHO05D007723 1.0e-85 320.1 170 88.8
Hma1.2p1_0003F.1_g003500 Hydrangea macrophylla HOM05D006214 ORTHO05D007723 6.7e-85 317.4 170 87.6
GSVIVG01035713001 Vitis vinifera HOM05D006214 ORTHO05D007723 2.6e-84 315.5 170 86.5
Nitab4.5_0002393g0090 Nicotiana tabacum HOM05D006214 ORTHO05D007723 9.7e-84 313.5 170 86.5
Thecc.09G038200 Theobroma cacao HOM05D006214 ORTHO05D007723 2.2e-83 312.4 170 86.5
TWI34G1412 Tripterygium wilfordii HOM05D006214 ORTHO05D007723 8.2e-83 310.5 171 86.0
PGSC0003DMG400014492 Solanum tuberosum HOM05D006214 ORTHO05D007723 1.4e-82 309.7 168 85.7
Oeu011261.1 Olea europaea HOM05D006214 ORTHO05D007723 3.1e-82 308.5 170 84.7
Nn8g39214 Nelumbo nucifera HOM05D006214 ORTHO05D007723 9.1e-82 307.0 170 85.3
Aqoxy7G01701 Aquilegia oxysepala HOM05D006214 ORTHO05D007723 1.6e-81 306.2 171 87.1
Nitab4.5_0000250g0190 Nicotiana tabacum HOM05D006214 ORTHO05D007723 2.0e-81 305.8 170 84.7
Eucgr.C02883 Eucalyptus grandis HOM05D006214 ORTHO05D007723 3.5e-81 305.1 170 84.7
Oeu014655.1 Olea europaea HOM05D006214 ORTHO05D007723 4.5e-81 304.7 170 84.1
COL.COLO4_18710 Corchorus olitorius HOM05D006214 ORTHO05D007723 1.3e-80 303.1 168 83.9
Solyc08g068070.3 Solanum lycopersicum HOM05D006214 ORTHO05D007723 1.7e-80 302.8 168 83.9
Migut.A00249 Erythranthe guttata HOM05D006214 ORTHO05D007723 2.9e-80 302.0 170 83.5
QL12p026136 Quercus lobata HOM05D006214 ORTHO05D007723 3.8e-80 301.6 169 84.0
Potri.006G244300 Populus trichocarpa HOM05D006214 ORTHO05D007723 6.5e-80 300.8 165 85.5
Manes.03G064300 Manihot esculenta HOM05D006214 ORTHO05D007723 1.5e-79 299.7 167 84.4
Duzib150G0825 Durio zibethinus HOM05D006214 ORTHO05D007723 3.2e-79 298.5 169 83.4
Cpa.g.sc205.8 Carica papaya HOM05D006214 ORTHO05D007723 9.4e-79 297.0 168 83.3
Actinidia31216 Actinidia chinensis HOM05D006214 ORTHO05D007723 2.1e-78 295.8 170 82.9
Thhalv10026389m.g Eutrema salsugineum HOM05D006214 ORTHO05D007723 2.1e-78 295.8 170 83.5
Rhsim02G0184100 Rhododendron simsii HOM05D006214 ORTHO05D007723 2.7e-78 295.4 167 83.8
Sed0020806 Sechium edule HOM05D006214 ORTHO05D007723 4.7e-78 294.7 168 82.1
Sc06g0000690 Simmondsia chinensis HOM05D006214 ORTHO05D007723 6.1e-78 294.3 168 81.5
TAR624G0931 Trochodendron aralioides HOM05D006214 ORTHO05D007723 6.1e-78 294.3 171 83.0
Ciclev10009715m.g Citrus clementina HOM05D006214 ORTHO05D007723 8.0e-78 293.9 168 83.9
PSO782G3114 Papaver somniferum HOM05D006214 ORTHO05D007723 8.0e-78 293.9 171 82.5
AUR62032401 Chenopodium quinoa HOM05D006214 ORTHO05D007723 1.0e-77 293.5 167 82.0
Aa31LG2G16930 Aethionema arabicum HOM05D006214 ORTHO05D007723 1.4e-77 293.1 170 82.4
Lsat_1_v5_gn_6_11341 Lactuca sativa HOM05D006214 ORTHO05D007723 1.4e-77 293.1 169 82.2
PSO063G0005 Papaver somniferum HOM05D006214 ORTHO05D007723 1.4e-77 293.1 171 82.5
Sopen08g021960 Solanum pennellii HOM05D006214 ORTHO05D007723 1.8e-77 292.7 170 81.8
DCAR_001036 Daucus carota HOM05D006214 ORTHO05D007723 5.2e-77 291.2 170 82.4
Gorai.013G218300 Gossypium raimondii HOM05D006214 ORTHO05D007723 5.2e-77 291.2 167 82.0
CiPaw.07G208400 Carya illinoinensis HOM05D006214 ORTHO05D007723 6.7e-77 290.8 164 83.5
Manes.16G067000 Manihot esculenta HOM05D006214 ORTHO05D007723 8.8e-77 290.4 167 81.4
Hund25645 Selenicereus undatus HOM05D006214 ORTHO05D007723 8.8e-77 290.4 168 82.1
C01p06220 Brassica napus HOM05D003889 ORTHO05D004407 1.1e-76 290.0 169 82.2
Sp7g30450 Schrenkiella parvula HOM05D006214 ORTHO05D007723 1.1e-76 290.0 170 81.2
PGR044G2495 Punica granatum HOM05D006214 ORTHO05D007723 1.5e-76 289.7 166 83.1
MELO3C011160.2 Cucumis melo HOM05D006214 ORTHO05D007723 2.6e-76 288.9 168 81.5
Gohir.D13G192400 Gossypium hirsutum HOM05D006214 ORTHO05D007723 3.3e-76 288.5 166 81.9
THA.LOC104803814 Tarenaya hassleriana HOM05D006214 ORTHO05D007723 1.3e-75 286.6 170 80.6
Cc08_g08530 Coffea canephora HOM05D006214 ORTHO05D007723 2.2e-75 285.8 161 83.9
BolC1t00620H Brassica oleracea HOM05D006214 ORTHO05D007723 2.8e-75 285.4 171 80.7
Peaxi162Scf00105g00059 Petunia axillaris HOM05D006214 ORTHO05D007723 2.8e-75 285.4 166 80.1
CiPaw.08G022500 Carya illinoinensis HOM05D006214 ORTHO05D007723 3.7e-75 285.0 170 78.2
CsaV3_2G031100 Cucumis sativus L. HOM05D006214 ORTHO05D007723 3.7e-75 285.0 168 81.0
AT4G32690 Arabidopsis thaliana HOM05D006214 ORTHO05D007723 8.2e-75 283.9 172 80.8
BcaC09g52063 Brassica carinata HOM05D003889 ORTHO05D004407 8.2e-75 283.9 169 81.1
HanXRQChr07g0192221 Helianthus annuus HOM05D006214 ORTHO05D007723 8.2e-75 283.9 169 78.7
AL7G19050 Arabidopsis lyrata HOM05D006214 ORTHO05D007723 1.4e-74 283.1 172 80.8
A01p05650 Brassica napus HOM05D003889 ORTHO05D004407 1.4e-74 283.1 155 85.8
ATR1120G189 Amborella trichopoda HOM05D006214 ORTHO05D007723 2.4e-74 282.3 165 79.4
SGA_v2.0_scaffold27G11530 Striga asiatica HOM05D006214 ORTHO05D007723 3.1e-74 282.0 174 77.6
Medtr1g008700 Medicago truncatula HOM05D006214 ORTHO05D007723 4.1e-74 281.6 166 80.7
CANSAT25G2048 Cannabis sativa HOM05D006214 ORTHO05D007723 1.2e-73 280.0 165 81.8
CARHR240670 Cardamine hirsuta HOM05D006214 ORTHO05D007723 1.6e-73 279.6 167 82.0
Haze_21823 Corylus avellana HOM05D006214 ORTHO05D007723 1.6e-73 279.6 164 81.1
Duzib168G0494 Durio zibethinus HOM05D006214 ORTHO05D007723 1.6e-73 279.6 170 78.2
BraA01t00535Z Brassica rapa HOM05D003889 ORTHO05D004407 2.7e-73 278.9 153 85.6
Carub.0007s0784 Capsella rubella HOM05D006214 ORTHO05D007723 2.7e-73 278.9 172 79.1
Actinidia13304 Actinidia chinensis HOM05D006214 ORTHO05D007723 1.0e-72 276.9 153 85.6
Cfa013332 Carpinus fangiana HOM05D006214 ORTHO05D007723 1.0e-72 276.9 164 80.5
Psat6g005800 Pisum sativum HOM05D006214 ORTHO05D007723 6.5e-72 274.2 165 78.8
arahy.Tifrunner.gnm1.ann1.72Y1Y4 Arachis hypogaea HOM05D006214 ORTHO05D007723 1.5e-71 273.1 165 78.8
Prupe.1G454300 Prunus persica HOM05D006214 ORTHO05D007723 1.5e-71 273.1 168 80.4
Lalb_Chr22g0361001 Lupinus albus HOM05D006214 ORTHO05D007723 1.9e-71 272.7 155 81.9
VMungo0647G2273 Vigna mungo HOM05D006214 ORTHO05D007723 3.2e-71 271.9 165 78.8
TPR.G12079 Trifolium pratense HOM05D006214 ORTHO05D007723 4.2e-71 271.6 168 76.8
RcHm_v2.0_Chr6g0305591 Rosa chinensis HOM05D006214 ORTHO05D007723 5.5e-71 271.2 151 86.1
Solyc08g068090.3 Solanum lycopersicum HOM05D006214 ORTHO05D007723 5.5e-71 271.2 161 80.1
Ca_12821_v3 Cicer arietinum L. HOM05D006214 ORTHO05D007723 1.6e-70 269.6 165 77.6
Ca_12822_v3 Cicer arietinum L. HOM05D006214 ORTHO05D007723 1.6e-70 269.6 165 77.6
arahy.Tifrunner.gnm1.ann1.8TR5WT Arachis hypogaea HOM05D006214 ORTHO05D007723 2.1e-70 269.2 165 77.6
Eucgr.L03669 Eucalyptus grandis HOM05D006214 ORTHO05D007723 8.0e-70 267.3 170 76.5
Sopen08g021970 Solanum pennellii HOM05D006214 ORTHO05D007723 8.0e-70 267.3 161 79.5
Lj8A606G25 Lonicera japonica HOM05D006214 ORTHO05D007723 3.0e-69 265.4 188 71.8
Lj1g0018426 Lotus japonicus HOM05D006214 ORTHO05D007723 5.2e-69 264.6 161 77.6
Lj1g0018927 Lotus japonicus HOM05D006214 ORTHO05D007723 5.2e-69 264.6 164 77.4
SEGI_02532 Sequoiadendron giganteum HOM05D006214 ORTHO05D007723 8.8e-69 263.8 155 79.4
Glyma.14G140400 Glycine max HOM05D006214 ORTHO05D007723 1.2e-68 263.5 165 76.4
Zm00001eb386050 Zea mays HOM05D006214 ORTHO05D007723 1.5e-68 263.1 166 76.5
FAN15G3028 Fragaria x ananassa HOM05D006214 ORTHO05D007723 2.0e-68 262.7 151 80.8
Lalb_Chr08g0243361 Lupinus albus HOM05D006214 ORTHO05D007723 2.6e-68 262.3 170 77.1
Ah.12g061040 Amaranthus hybridus HOM05D006214 ORTHO05D007723 1.3e-67 260.0 168 75.0
Phvul.001G060001 Phaseolus vulgaris HOM05D006214 ORTHO05D007723 2.2e-67 259.2 166 75.9
Medtr3g109420 Medicago truncatula HOM05D006214 ORTHO05D007723 2.8e-67 258.8 154 79.9
Os06g0591600 Oryza sativa ssp. japonica HOM05D006214 ORTHO05D007723 3.7e-67 258.5 170 74.7
Phvul.009G104900 Phaseolus vulgaris HOM05D006214 ORTHO05D007723 6.3e-67 257.7 166 72.9
Psat0s1478g0160 Pisum sativum HOM05D006214 ORTHO05D007723 6.3e-67 257.7 154 79.2
VMungo1309G2769 Vigna mungo HOM05D006214 ORTHO05D007723 8.3e-67 257.3 165 75.2
Glyma.04G079200 Glycine max HOM05D006214 ORTHO05D007723 1.3e-64 250.0 165 73.3
MD15G1099500 Malus domestica HOM05D006214 ORTHO05D007723 1.7e-64 249.6 153 77.8
FAN20G2536 Fragaria x ananassa HOM05D006214 ORTHO05D007723 2.2e-64 249.2 151 78.1
FvH4_2g36290 Fragaria vesca HOM05D006214 ORTHO05D007723 5.0e-64 248.1 151 77.5
HPP92_005176 Vanilla planifolia HOM05D006214 ORTHO05D007723 1.1e-63 246.9 188 67.0
Atru.chr7.2182 Acer truncatum HOM05D006214 ORTHO05D007723 4.2e-63 245.0 139 79.9
Atru.chr7.2299 Acer truncatum HOM05D006214 ORTHO05D007723 4.2e-63 245.0 139 79.9
FAN27G2409 Fragaria x ananassa HOM05D006214 ORTHO05D007723 4.2e-63 245.0 151 76.8
Ca_15627_v3 Cicer arietinum L. HOM05D006214 ORTHO05D007723 7.2e-63 244.2 152 76.3
TPR.G1342 Trifolium pratense HOM05D006214 ORTHO05D007723 2.1e-62 242.7 156 76.3
Sabra06G0191200 Salix brachista HOM05D006214 ORTHO05D007723 4.0e-61 238.4 166 72.9
SMO164G0258 Selaginella moellendorffii HOM05D006214 ORTHO05D007723 4.4e-60 235.0 156 71.8
ECA233G3302 Erigeron canadensis HOM05D006214 ORTHO05D007723 4.5e-57 224.9 316 43.0
AagrBONN_evm.TU.Sc2ySwM_368.1910 Anthoceros agrestis HOM05D006214 ORTHO05D007723 1.0e-56 223.8 157 70.1
Pp3c1_3380 Physcomitrium patens HOM05D006214 ORTHO05D007723 1.5e-55 219.9 155 67.1
Gohir.D05G051050 Gossypium hirsutum HOM05D006214 ORTHO05D007723 1.9e-55 219.5 180 63.9
Pp3c6_250 Physcomitrium patens HOM05D006214 ORTHO05D007723 3.3e-55 218.8 166 63.9
arahy.Tifrunner.gnm1.ann1.LJ0T63 Arachis hypogaea HOM05D006214 ORTHO05D007723 5.6e-55 218.0 142 74.6
AUR62024819 Chenopodium quinoa HOM05D006214 ORTHO05D007723 7.3e-55 217.6 121 81.8
CAN.G886.7 Capsicum annuum HOM05D006214 ORTHO05D007723 6.1e-54 214.5 134 77.6
unitig_0.g2807 Utricularia gibba HOM05D006435 ORTHO05D008262 5.7e-52 208.0 141 70.2
Gorai.009G052700 Gossypium raimondii HOM05D006214 ORTHO05D007723 1.1e-47 193.7 112 80.4
MBI04_g08934_MAGBIO Magnolia biondii HOM05D006214 ORTHO05D003073 1.5e-47 193.4 308 40.6
EL10Ac2g02522 Beta vulgaris HOM05D006214 ORTHO05D007723 6.2e-46 188.0 170 59.4
TAR636G1550 Trochodendron aralioides HOM05D006214 ORTHO05D007723 9.8e-44 180.6 222 47.3
ClCG08G012410 Citrullus lanatus HOM05D006214 ORTHO05D007723 1.5e-39 166.8 209 46.9
CSS0020447 Camellia sinensis var. sinensis HOM05D006214 ORTHO05D007723 3.6e-30 135.6 84 79.8
CSS0007395 Camellia sinensis var. sinensis HOM05D006214 ORTHO05D007723 8.9e-29 131.0 80 72.5
Lsat_1_v5_gn_6_11301 Lactuca sativa HOM05D006214 ORTHO05D007723 1.1e-26 124.0 67 86.6
Potri.018G036200 Populus trichocarpa HOM05D006214 ORTHO05D007723 1.4e-26 123.6 76 73.7
C01p47490 Brassica napus HOM05D006214 ORTHO05D007723 1.8e-21 106.7 77 63.6
BolC1t04720H Brassica oleracea HOM05D006214 ORTHO05D007723 3.3e-15 85.9 42 85.7
Peaxi162Scf00105g00513 Petunia axillaris HOM05D006214 ORTHO05D007723 4.5e-12 75.5 88 45.5
Glyma.06G080700 Glycine max HOM05D006214 ORTHO05D007723 2.9e-11 72.8 69 49.3
HanXRQChr07g0195131 Helianthus annuus HOM05D006214 ORTHO05D007723 3.8e-11 72.4 45 73.3
arahy.Tifrunner.gnm1.ann1.YGZX15 Arachis hypogaea HOM05D000254 ORTHO05D000165 1.5e-07 60.5 119 33.6
Nitab4.5_0000250g0200 Nicotiana tabacum HOM05D006214 ORTHO05D007723 3.3e-07 59.3 38 68.4
SMO164G0257 Selaginella moellendorffii HOM05D014720 ORTHO05D377594 2.1e-06 56.6 47 63.8


User provided reference genes

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