Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015623 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 2.2e-44 181.8 86 100.0
Thecc.04G277700 Theobroma cacao HOM05D003864 ORTHO05D004658 2.7e-18 95.1 51 86.3
Lj6A670T81 Lonicera japonica HOM05D003864 ORTHO05D004658 3.6e-18 94.7 51 82.4
Manes.15G016900 Manihot esculenta HOM05D003864 ORTHO05D004658 3.6e-18 94.7 51 86.3
Rhsim02G0013600 Rhododendron simsii HOM05D003864 ORTHO05D004658 3.6e-18 94.7 51 84.3
SGA_v2.0_scaffold57G20242 Striga asiatica HOM05D003864 ORTHO05D004658 3.6e-18 94.7 50 88.0
TAR633G1069 Trochodendron aralioides HOM05D003864 ORTHO05D004658 3.6e-18 94.7 51 84.3
CAN.G256.9 Capsicum annuum HOM05D003864 ORTHO05D004658 4.7e-18 94.4 51 86.3
CiPaw.02G086600 Carya illinoinensis HOM05D003864 ORTHO05D004658 6.1e-18 94.0 51 84.3
PGSC0003DMG400030786 Solanum tuberosum HOM05D003864 ORTHO05D004658 6.1e-18 94.0 51 86.3
GSVIVG01017804001 Vitis vinifera HOM05D003864 ORTHO05D004658 6.1e-18 94.0 50 84.0
COL.COLO4_13927 Corchorus olitorius HOM05D003864 ORTHO05D004658 8.0e-18 93.6 51 84.3
Nitab4.5_0000784g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 8.0e-18 93.6 51 86.3
Cc03_g02350 Coffea canephora HOM05D003864 ORTHO05D004658 1.0e-17 93.2 51 84.3
Hma1.2p1_0150F.1_g066600 Hydrangea macrophylla HOM05D003864 ORTHO05D004658 1.0e-17 93.2 51 84.3
Nitab4.5_0001054g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 1.0e-17 93.2 51 84.3
vmacro08202 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 1.0e-17 93.2 51 82.4
Haze_01063 Corylus avellana HOM05D003864 ORTHO05D004658 1.4e-17 92.8 51 82.4
QL06p007393 Quercus lobata HOM05D003864 ORTHO05D004658 1.8e-17 92.4 51 82.4
Rhsim04G0216400 Rhododendron simsii HOM05D003864 ORTHO05D004658 1.8e-17 92.4 51 82.4
Solyc01g067630.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 1.8e-17 92.4 51 84.3
Duzib151G0071 Durio zibethinus HOM05D003864 ORTHO05D004658 2.3e-17 92.0 51 82.4
Migut.G00209 Erythranthe guttata HOM05D003864 ORTHO05D004658 3.0e-17 91.7 50 84.0
Cfa015492 Carpinus fangiana HOM05D003864 ORTHO05D004658 4.0e-17 91.3 51 80.4
Nn4g25986 Nelumbo nucifera HOM05D003864 ORTHO05D004658 4.0e-17 91.3 51 82.4
TAR362G0395 Trochodendron aralioides HOM05D003864 ORTHO05D004658 4.0e-17 91.3 51 82.4
CSS0001944 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 5.2e-17 90.9 51 80.4
CSS0038005 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 5.2e-17 90.9 51 80.4
Ciclev10005325m.g Citrus clementina HOM05D003864 ORTHO05D004658 5.2e-17 90.9 51 82.4
Nn3g21324 Nelumbo nucifera HOM05D003864 ORTHO05D004658 5.2e-17 90.9 51 80.4
Peaxi162Scf00386g00316 Petunia axillaris HOM05D003864 ORTHO05D004658 5.2e-17 90.9 51 82.4
Aqoxy2G03115 Aquilegia oxysepala HOM05D003864 ORTHO05D004658 6.8e-17 90.5 51 78.4
Actinidia00050 Actinidia chinensis HOM05D003864 ORTHO05D004658 8.8e-17 90.1 49 81.6
Actinidia23428 Actinidia chinensis HOM05D003864 ORTHO05D004658 8.8e-17 90.1 51 82.4
Gohir.A10G101440 Gossypium hirsutum HOM05D003864 ORTHO05D004658 8.8e-17 90.1 51 80.4
Gohir.D10G166700 Gossypium hirsutum HOM05D003864 ORTHO05D004658 8.8e-17 90.1 51 80.4
Gorai.011G185900 Gossypium raimondii HOM05D003864 ORTHO05D004658 8.8e-17 90.1 51 80.4
Eucgr.B01266 Eucalyptus grandis HOM05D003864 ORTHO05D004658 1.2e-16 89.7 51 78.4
Manes.03G191300 Manihot esculenta HOM05D003864 ORTHO05D004658 1.2e-16 89.7 51 82.4
PGR031G0559 Punica granatum HOM05D003864 ORTHO05D004658 1.2e-16 89.7 51 80.4
MSTRG.10054 Avicennia marina HOM05D003864 ORTHO05D004658 1.5e-16 89.4 50 82.0
Potri.008G204700 Populus trichocarpa HOM05D003864 ORTHO05D004658 1.5e-16 89.4 51 80.4
Sabra08G0157300 Salix brachista HOM05D003864 ORTHO05D004658 1.5e-16 89.4 51 80.4
RcHm_v2.0_Chr4g0421021 Rosa chinensis HOM05D003864 ORTHO05D004658 2.0e-16 89.0 50 80.0
CiPaw.01G152900 Carya illinoinensis HOM05D003864 ORTHO05D004658 2.6e-16 88.6 51 78.4
Nitab4.5_0001459g0140 Nicotiana tabacum HOM05D003864 ORTHO05D004658 2.6e-16 88.6 51 80.4
Peaxi162Scf00033g01410 Petunia axillaris HOM05D003864 ORTHO05D004658 2.6e-16 88.6 50 84.0
vmacro15256 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 4.4e-16 87.8 51 78.4
vmacro22597 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 4.4e-16 87.8 51 78.4
FvH4_4g17200 Fragaria vesca HOM05D003864 ORTHO05D004658 7.5e-16 87.0 50 78.0
FAN07G1078 Fragaria x ananassa HOM05D003864 ORTHO05D004658 7.5e-16 87.0 50 78.0
FAN17G0790 Fragaria x ananassa HOM05D003864 ORTHO05D004658 7.5e-16 87.0 50 78.0
FAN22G0711 Fragaria x ananassa HOM05D003864 ORTHO05D004658 7.5e-16 87.0 50 78.0
LjContig00389g0005087 Lotus japonicus HOM05D003864 ORTHO05D004658 7.5e-16 87.0 53 73.6
Medtr2g020190 Medicago truncatula HOM05D003864 ORTHO05D004658 7.5e-16 87.0 50 80.0
RcHm_v2.0_Chr4g0421081 Rosa chinensis HOM05D003864 ORTHO05D004658 7.5e-16 87.0 50 78.0
ClCG06G005360 Citrullus lanatus HOM05D003864 ORTHO05D004658 9.8e-16 86.7 50 78.0
Prupe.1G142000 Prunus persica HOM05D003864 ORTHO05D004658 1.3e-15 86.3 50 78.0
Atru.chr4.2755 Acer truncatum HOM05D003864 ORTHO05D004658 1.7e-15 85.9 49 77.6
MD13G1173800 Malus domestica HOM05D003864 ORTHO05D004658 1.7e-15 85.9 50 78.0
Nitab4.5_0004537g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 1.7e-15 85.9 51 76.5
Oeu044793.1 Olea europaea HOM05D003864 ORTHO05D004658 1.7e-15 85.9 51 76.5
Phvul.002G188400 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 1.7e-15 85.9 50 76.0
MD16G1174800 Malus domestica HOM05D003864 ORTHO05D004658 2.2e-15 85.5 50 76.0
Sed0015457 Sechium edule HOM05D003864 ORTHO05D004658 2.2e-15 85.5 50 76.0
CsaV3_6G017400 Cucumis sativus L. HOM05D003864 ORTHO05D004658 2.8e-15 85.1 50 76.0
AL4G36380 Arabidopsis lyrata HOM05D003864 ORTHO05D004658 3.7e-15 84.7 51 74.5
Ca_00573_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 3.7e-15 84.7 50 74.0
THA.LOC104820237 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 3.7e-15 84.7 51 76.5
TPR.G1486 Trifolium pratense HOM05D003864 ORTHO05D004658 3.7e-15 84.7 50 76.0
BcaB01g03648 Brassica carinata HOM05D003864 ORTHO05D004658 4.8e-15 84.3 51 72.5
BcaB02g09145 Brassica carinata HOM05D003864 ORTHO05D004658 4.8e-15 84.3 51 74.5
A03p21870 Brassica napus HOM05D003864 ORTHO05D004658 4.8e-15 84.3 51 72.5
C03p25940 Brassica napus HOM05D003864 ORTHO05D004658 4.8e-15 84.3 51 72.5
BraA03t11423Z Brassica rapa HOM05D003864 ORTHO05D004658 4.8e-15 84.3 51 72.5
Hund20596 Selenicereus undatus HOM05D003864 ORTHO05D004658 4.8e-15 84.3 50 76.0
arahy.Tifrunner.gnm1.ann1.CLS5KG Arachis hypogaea HOM05D003864 ORTHO05D004658 6.3e-15 84.0 50 76.0
CDE05G0625 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 6.3e-15 84.0 51 74.5
Sed0008062 Sechium edule HOM05D003864 ORTHO05D004658 6.3e-15 84.0 50 74.0
Sc19g0004950 Simmondsia chinensis HOM05D003864 ORTHO05D004658 6.3e-15 84.0 53 71.7
TWI53G0015 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 6.3e-15 84.0 51 78.4
TWI53G1008 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 6.3e-15 84.0 51 78.4
Lalb_Chr07g0188241 Lupinus albus HOM05D003864 ORTHO05D004658 8.3e-15 83.6 50 76.0
PSO210G7573 Papaver somniferum HOM05D003864 ORTHO05D004658 8.3e-15 83.6 51 76.5
VMungo0251G3051 Vigna mungo HOM05D003864 ORTHO05D004658 8.3e-15 83.6 50 74.0
CDE01G0506 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 1.1e-14 83.2 51 70.6
MELO3C021355.2 Cucumis melo HOM05D003864 ORTHO05D004658 1.1e-14 83.2 50 76.0
Thhalv10016876m.g Eutrema salsugineum HOM05D003864 ORTHO05D004658 1.1e-14 83.2 51 72.5
arahy.Tifrunner.gnm1.ann1.WPBE4U Arachis hypogaea HOM05D003864 ORTHO05D004658 1.4e-14 82.8 50 74.0
Carub.0004s2113 Capsella rubella HOM05D003864 ORTHO05D004658 1.4e-14 82.8 51 70.6
DCAR_027110 Daucus carota HOM05D003864 ORTHO05D004658 1.8e-14 82.4 51 70.6
Glyma.13G215300 Glycine max HOM05D003864 ORTHO05D004658 1.8e-14 82.4 50 74.0
BcaC02g12030 Brassica carinata HOM05D003864 ORTHO05D004658 2.4e-14 82.0 51 70.6
A05p07200 Brassica napus HOM05D003864 ORTHO05D004658 2.4e-14 82.0 51 70.6
C04p08680 Brassica napus HOM05D003864 ORTHO05D004658 2.4e-14 82.0 51 70.6
BraA05t19685Z Brassica rapa HOM05D003864 ORTHO05D004658 2.4e-14 82.0 51 70.6
Lalb_Chr18g0055711 Lupinus albus HOM05D003864 ORTHO05D004658 2.4e-14 82.0 50 74.0
PSO170G3769 Papaver somniferum HOM05D003864 ORTHO05D004658 2.4e-14 82.0 51 74.5
AT2G39080 Arabidopsis thaliana HOM05D003864 ORTHO05D004658 3.1e-14 81.6 51 72.5
arahy.Tifrunner.gnm1.ann1.858I9V Arachis hypogaea HOM05D003864 ORTHO05D004658 3.1e-14 81.6 50 72.0
CARHR133840 Cardamine hirsuta HOM05D003864 ORTHO05D004658 3.1e-14 81.6 51 72.5
CDE12G0314 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 3.1e-14 81.6 51 74.5
Glyma.05G133900 Glycine max HOM05D003864 ORTHO05D004658 3.1e-14 81.6 50 74.0
DCAR_002443 Daucus carota HOM05D003864 ORTHO05D004658 4.1e-14 81.3 49 73.5
Phvul.006G161500 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 4.1e-14 81.3 50 74.0
Ah.12g064180 Amaranthus hybridus HOM05D003864 ORTHO05D004658 5.4e-14 80.9 50 72.0
C04p08610 Brassica napus HOM05D003864 ORTHO05D004658 5.4e-14 80.9 51 70.6
Glyma.08G088600 Glycine max HOM05D003864 ORTHO05D004658 5.4e-14 80.9 50 72.0
Lj4g0016445 Lotus japonicus HOM05D003864 ORTHO05D004658 5.4e-14 80.9 50 72.0
Lalb_Chr20g0118111 Lupinus albus HOM05D003864 ORTHO05D004658 9.1e-14 80.1 49 71.4
Psat1g187240 Pisum sativum HOM05D003864 ORTHO05D004658 9.1e-14 80.1 46 78.3
unitig_748.g8370 Utricularia gibba HOM05D003864 ORTHO05D004658 9.1e-14 80.1 50 72.0
EL10Ac6g14524 Beta vulgaris HOM05D003864 ORTHO05D004658 1.2e-13 79.7 50 74.0
BcaC02g12038 Brassica carinata HOM05D003864 ORTHO05D004658 1.2e-13 79.7 51 68.6
Cpa.g.sc1008.4 Carica papaya HOM05D003864 ORTHO05D004658 1.6e-13 79.3 55 70.9
SGA_v2.0_scaffold89G27550 Striga asiatica HOM05D003864 ORTHO05D004658 1.6e-13 79.3 50 72.0
THA.LOC104821766 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 1.6e-13 79.3 51 68.6
Glyma.15G097900 Glycine max HOM05D003864 ORTHO05D004658 2.0e-13 79.0 51 74.5
Os01g0367400 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 2.7e-13 78.6 51 64.7
BolC4t22455H Brassica oleracea HOM05D005803 ORTHO05D008090 3.5e-13 78.2 51 66.7
ATR0706G015 Amborella trichopoda HOM05D003864 ORTHO05D004658 4.5e-13 77.8 51 70.6
Ca_18234_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 4.5e-13 77.8 53 64.2
Medtr4g094742 Medicago truncatula HOM05D003864 ORTHO05D004658 4.5e-13 77.8 50 68.0
Os01g0367100 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 4.5e-13 77.8 51 64.7
AUR62002937 Chenopodium quinoa HOM05D003864 ORTHO05D004658 5.9e-13 77.4 50 70.0
AUR62007746 Chenopodium quinoa HOM05D003864 ORTHO05D004658 5.9e-13 77.4 50 70.0
Aa31LG5G20520 Aethionema arabicum HOM05D003864 ORTHO05D004658 7.7e-13 77.0 51 62.7
Lsat_1_v5_gn_5_56881 Lactuca sativa HOM05D003864 ORTHO05D004658 7.7e-13 77.0 51 72.5
PGR004G1016 Punica granatum HOM05D003864 ORTHO05D004658 1.0e-12 76.6 51 60.8
HPP92_017180 Vanilla planifolia HOM05D003864 ORTHO05D004658 1.0e-12 76.6 50 64.0
Sp4g21430 Schrenkiella parvula HOM05D003864 ORTHO05D004658 1.3e-12 76.3 51 66.7
TPR.G23836 Trifolium pratense HOM05D003864 ORTHO05D004658 1.3e-12 76.3 50 68.0
Zm00001eb131760 Zea mays HOM05D003864 ORTHO05D004658 2.3e-12 75.5 51 64.7
arahy.Tifrunner.gnm1.ann1.ZU35GG Arachis hypogaea HOM05D003864 ORTHO05D004658 3.3e-11 71.6 42 76.2
ECA240G1720 Erigeron canadensis HOM05D003864 ORTHO05D004658 5.5e-11 70.9 51 66.7
HanXRQChr13g0411221 Helianthus annuus HOM05D003864 ORTHO05D004658 7.2e-11 70.5 51 66.7
Mapoly0090s0075 Marchantia polymorpha HOM05D003864 ORTHO05D004658 7.2e-11 70.5 51 60.8
SHI00297 Sapria himalayana HOM05D003864 ORTHO05D004658 7.2e-11 70.5 53 62.3
Zm00001eb341670 Zea mays HOM05D003864 ORTHO05D004658 7.2e-11 70.5 51 58.8
Dinv02075 Davidia involucrata HOM05D003864 ORTHO05D035062 1.6e-10 69.3 53 64.2
Dinv08007 Davidia involucrata HOM05D003864 ORTHO05D035062 1.6e-10 69.3 53 64.2
AagrBONN_evm.TU.Sc2ySwM_344.1910 Anthoceros agrestis HOM05D003864 ORTHO05D004658 3.4e-08 61.6 49 55.1
MBI19_g26585_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 3.4e-08 61.6 51 58.8
Pp3c12_8620 Physcomitrium patens HOM05D003864 ORTHO05D004658 2.2e-07 58.9 50 50.0
Pp3c13_19760 Physcomitrium patens HOM05D003864 ORTHO05D004658 8.3e-07 57.0 50 48.0


User provided reference genes

Program Settings