Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015590 Camellia sinensis var. sinensis HOM05D001991 ORTHO05D002030 1.4e-156 556.2 272 100.0
Actinidia08128 Actinidia chinensis HOM05D001991 ORTHO05D002030 2.9e-45 186.4 144 71.5
vmacro01120 Vaccinium macrocarpon HOM05D001991 ORTHO05D002030 4.6e-43 179.1 142 67.6
Actinidia26739 Actinidia chinensis HOM05D001991 ORTHO05D002030 1.7e-42 177.2 145 67.6
vmacro16182 Vaccinium macrocarpon HOM05D001991 ORTHO05D002030 3.1e-39 166.4 143 65.7
Dinv14734 Davidia involucrata HOM05D001991 ORTHO05D002030 5.2e-39 165.6 143 65.0
Rhsim12G0039700 Rhododendron simsii HOM05D001991 ORTHO05D002030 5.8e-38 162.2 141 63.8
TAR371G0096 Trochodendron aralioides HOM05D001991 ORTHO05D002030 1.1e-36 157.9 144 58.3
TAR629G2755 Trochodendron aralioides HOM05D001991 ORTHO05D002030 1.1e-36 157.9 144 59.7
Hma1.2p1_0079F.1_g041070 Hydrangea macrophylla HOM05D001991 ORTHO05D002030 9.2e-36 154.8 144 60.4
TWI75G1322 Tripterygium wilfordii HOM05D001991 ORTHO05D002030 9.2e-36 154.8 144 59.7
TWI18G0479 Tripterygium wilfordii HOM05D001991 ORTHO05D002030 1.2e-35 154.5 144 59.7
Rhsim12G0108800 Rhododendron simsii HOM05D001991 ORTHO05D002030 7.8e-35 151.8 175 56.0
Potri.008G185400 Populus trichocarpa HOM05D001991 ORTHO05D002030 1.0e-34 151.4 143 58.0
CiPaw.05G179600 Carya illinoinensis HOM05D001991 ORTHO05D002030 1.3e-34 151.0 146 58.2
TWI36G0509 Tripterygium wilfordii HOM05D001991 ORTHO05D002030 1.3e-34 151.0 145 59.3
PSO063G3998 Papaver somniferum HOM05D001991 ORTHO05D002030 2.3e-34 150.2 151 58.9
CSS0025753 Camellia sinensis var. sinensis HOM05D001991 ORTHO05D002030 5.1e-34 149.1 143 58.7
CiPaw.06G066600 Carya illinoinensis HOM05D001991 ORTHO05D002030 5.1e-34 149.1 147 58.5
Nn4g22575 Nelumbo nucifera HOM05D001991 ORTHO05D002030 6.6e-34 148.7 143 55.2
Cfa009231 Carpinus fangiana HOM05D001991 ORTHO05D000198 8.6e-34 148.3 151 56.3
TAR374G1687 Trochodendron aralioides HOM05D000273 ORTHO05D000198 2.5e-33 146.7 147 55.8
GSVIVG01000549001 Vitis vinifera HOM05D001991 ORTHO05D002030 4.3e-33 146.0 144 58.3
Cpa.g.sc33.43 Carica papaya HOM05D001991 ORTHO05D002030 5.6e-33 145.6 146 56.8
PSO754G0066 Papaver somniferum HOM05D001991 ORTHO05D002030 7.3e-33 145.2 151 57.6
Manes.13G022300 Manihot esculenta HOM05D001991 ORTHO05D002030 1.2e-32 144.4 142 56.3
Lj6C814T13 Lonicera japonica HOM05D001991 ORTHO05D002030 1.6e-32 144.1 134 63.4
Sabra08G0140400 Salix brachista HOM05D001991 ORTHO05D002030 3.6e-32 142.9 143 55.2
Duzib248G0408 Durio zibethinus HOM05D001991 ORTHO05D002030 6.2e-32 142.1 151 55.0
Thecc.02G262800 Theobroma cacao HOM05D001991 ORTHO05D002030 8.1e-32 141.7 148 55.4
Hund25397 Selenicereus undatus HOM05D001991 ORTHO05D002030 6.9e-31 138.7 171 51.5
CANSAT01G2806 Cannabis sativa HOM05D001991 ORTHO05D002030 8.9e-31 138.3 143 56.6
Haze_12267 Corylus avellana HOM05D001991 ORTHO05D002030 1.5e-30 137.5 147 54.4
Prupe.1G246800 Prunus persica HOM05D001991 ORTHO05D002030 2.0e-30 137.1 156 53.8
QL03p057223 Quercus lobata HOM05D001991 ORTHO05D002030 2.6e-30 136.7 151 55.0
Sabra10G0020800 Salix brachista HOM05D003288 ORTHO05D003734 3.4e-30 136.3 150 50.7
Potri.010G048200 Populus trichocarpa HOM05D001991 ORTHO05D002030 5.8e-30 135.6 143 53.1
Ciclev10031235m.g Citrus clementina HOM05D001991 ORTHO05D002030 7.6e-30 135.2 143 58.0
Gohir.D01G151800 Gossypium hirsutum HOM05D001991 ORTHO05D002030 2.2e-29 133.7 146 52.7
Gorai.002G188100 Gossypium raimondii HOM05D001991 ORTHO05D002030 2.2e-29 133.7 146 52.7
Lalb_Chr12g0204031 Lupinus albus HOM05D001991 ORTHO05D002030 2.2e-29 133.7 148 52.7
Phvul.002G259400 Phaseolus vulgaris HOM05D001991 ORTHO05D002030 2.2e-29 133.7 148 54.7
Nn3g16681 Nelumbo nucifera HOM05D001991 ORTHO05D002030 3.8e-29 132.9 144 52.8
Eucgr.B03270 Eucalyptus grandis HOM05D001991 ORTHO05D002030 8.4e-29 131.7 144 50.7
Actinidia01357 Actinidia chinensis HOM05D001991 ORTHO05D002030 1.4e-28 131.0 111 64.9
Glyma.05G174400 Glycine max HOM05D001991 ORTHO05D002030 4.2e-28 129.4 145 51.7
Gohir.A03G133200 Gossypium hirsutum HOM05D001991 ORTHO05D002030 4.2e-28 129.4 151 51.7
MD16G1099600 Malus domestica HOM05D001991 ORTHO05D002030 4.2e-28 129.4 161 51.6
COL.COLO4_23473 Corchorus olitorius HOM05D001991 ORTHO05D002030 5.4e-28 129.0 149 53.7
Gorai.005G176700 Gossypium raimondii HOM05D001991 ORTHO05D002030 5.4e-28 129.0 151 51.0
Lj3A1060G69 Lonicera japonica HOM05D001991 ORTHO05D002030 5.4e-28 129.0 96 71.9
VMungo0251G2038 Vigna mungo HOM05D001991 ORTHO05D002030 7.1e-28 128.6 149 53.7
Atru.chr11.2159 Acer truncatum HOM05D001991 ORTHO05D002030 1.2e-27 127.9 143 49.7
PGR102G1816 Punica granatum HOM05D001991 ORTHO05D002030 2.7e-27 126.7 142 52.1
Lj4g0004810 Lotus japonicus HOM05D001991 ORTHO05D002030 3.5e-27 126.3 143 51.7
Gohir.D02G157500 Gossypium hirsutum HOM05D001991 ORTHO05D002030 6.0e-27 125.6 151 50.3
Ca_17780_v3 Cicer arietinum L. HOM05D001991 ORTHO05D002030 7.8e-27 125.2 145 49.7
TPR.G6216 Trifolium pratense HOM05D001991 ORTHO05D002030 7.8e-27 125.2 145 50.3
Cc11_g15900 Coffea canephora HOM05D001991 ORTHO05D002030 1.0e-26 124.8 143 53.1
Duzib268G1304 Durio zibethinus HOM05D001991 ORTHO05D002030 1.0e-26 124.8 151 51.7
Sp1g11570 Schrenkiella parvula HOM05D001991 ORTHO05D002030 1.7e-26 124.0 145 49.7
Medtr8g089785 Medicago truncatula HOM05D001991 ORTHO05D002030 2.3e-26 123.6 145 50.3
Glyma.08G131600 Glycine max HOM05D001991 ORTHO05D002030 3.9e-26 122.9 145 50.3
Lalb_Chr13g0295851 Lupinus albus HOM05D001991 ORTHO05D002030 3.9e-26 122.9 155 47.7
Aa31LG1G1780 Aethionema arabicum HOM05D001991 ORTHO05D002030 5.1e-26 122.5 161 46.0
AUR62024243 Chenopodium quinoa HOM05D001991 ORTHO05D002030 1.5e-25 120.9 156 52.6
CARHR013350 Cardamine hirsuta HOM05D001991 ORTHO05D002030 1.9e-25 120.6 145 48.3
THA.LOC104824007 Tarenaya hassleriana HOM05D001991 ORTHO05D002030 1.9e-25 120.6 143 49.7
Ah.03g133340 Amaranthus hybridus HOM05D001991 ORTHO05D002030 2.5e-25 120.2 142 53.5
EL10Ac6g13868 Beta vulgaris HOM05D001991 ORTHO05D002030 3.3e-25 119.8 149 52.3
CDE09G0346 Ceratophyllum demersum HOM05D000273 ORTHO05D000198 3.3e-25 119.8 147 51.0
AUR62005498 Chenopodium quinoa HOM05D001991 ORTHO05D002030 7.3e-25 118.6 154 52.6
Manes.12G021400 Manihot esculenta HOM05D001991 ORTHO05D002030 2.1e-24 117.1 148 48.0
CsaV3_2G024990 Cucumis sativus L. HOM05D001991 ORTHO05D002030 3.6e-24 116.3 159 44.0
Thhalv10007279m.g Eutrema salsugineum HOM05D001991 ORTHO05D002030 4.8e-24 115.9 145 47.6
ClCG08G017650 Citrullus lanatus HOM05D001991 ORTHO05D002030 1.1e-23 114.8 159 44.0
Lalb_Chr07g0185411 Lupinus albus HOM05D001991 ORTHO05D002030 1.4e-23 114.4 141 48.9
arahy.Tifrunner.gnm1.ann1.FAC3HW Arachis hypogaea HOM05D001991 ORTHO05D002030 1.8e-23 114.0 149 45.0
Sc04g0009620 Simmondsia chinensis HOM05D001991 ORTHO05D002030 1.8e-23 114.0 143 51.0
MBI10_g31499_MAGBIO Magnolia biondii HOM05D001991 ORTHO05D002030 2.4e-23 113.6 148 46.6
AL1G24670 Arabidopsis lyrata HOM05D001991 ORTHO05D002030 4.0e-23 112.8 145 46.2
arahy.Tifrunner.gnm1.ann1.YC9QB8 Arachis hypogaea HOM05D001991 ORTHO05D002030 5.3e-23 112.5 146 45.9
Aa31LG2G6130 Aethionema arabicum HOM05D001991 ORTHO05D002030 6.9e-23 112.1 156 42.9
TAR622G0091 Trochodendron aralioides HOM05D001991 ORTHO05D002030 6.9e-23 112.1 148 46.6
AT1G13020 Arabidopsis thaliana HOM05D001991 ORTHO05D002030 1.2e-22 111.3 145 46.2
ATR0081G059 Amborella trichopoda HOM05D001991 ORTHO05D002030 7.6e-22 108.6 142 50.7
Aqoxy5G03724 Aquilegia oxysepala HOM05D001991 ORTHO05D002030 9.9e-22 108.2 168 42.9
Carub.0001s1277 Capsella rubella HOM05D001991 ORTHO05D002030 1.3e-21 107.8 145 46.9
Carub.0005s0437 Capsella rubella HOM05D001991 ORTHO05D002030 2.9e-21 106.7 146 45.2
Gohir.A01G163000 Gossypium hirsutum HOM05D001991 ORTHO05D002030 2.9e-21 106.7 135 48.9
THA.LOC104825667 Tarenaya hassleriana HOM05D001991 ORTHO05D002030 2.9e-21 106.7 145 44.1
BraA08t35175Z Brassica rapa HOM05D001991 ORTHO05D002030 3.8e-21 106.3 141 48.2
Duzib251G0379 Durio zibethinus HOM05D001991 ORTHO05D002030 4.9e-21 105.9 133 49.6
Oeu059772.1 Olea europaea HOM05D000273 ORTHO05D000198 4.9e-21 105.9 143 47.6
A08p32510 Brassica napus HOM05D001991 ORTHO05D002030 6.4e-21 105.5 141 47.5
RcHm_v2.0_Chr4g0433421 Rosa chinensis HOM05D001991 ORTHO05D002030 8.4e-21 105.1 139 48.2
AT3G26400 Arabidopsis thaliana HOM05D001991 ORTHO05D002030 1.1e-20 104.8 146 45.2
arahy.Tifrunner.gnm1.ann1.2WLS1Y Arachis hypogaea HOM05D001991 ORTHO05D002030 2.4e-20 103.6 140 45.7
C08p15780 Brassica napus HOM05D001991 ORTHO05D002030 5.4e-20 102.4 142 47.2
BolC8t49204H Brassica oleracea HOM05D001991 ORTHO05D002030 5.4e-20 102.4 142 47.2
MELO3C010696.2 Cucumis melo HOM05D001991 ORTHO05D002030 9.3e-20 101.7 187 36.9
C07p35440 Brassica napus HOM05D001991 ORTHO05D002030 1.6e-19 100.9 148 44.6
BolC7t44068H Brassica oleracea HOM05D001991 ORTHO05D002030 1.6e-19 100.9 148 44.6
BolC8t52231H Brassica oleracea HOM05D001991 ORTHO05D002030 1.6e-19 100.9 140 45.0
FAN22G0770 Fragaria x ananassa HOM05D001991 ORTHO05D002030 1.6e-19 100.9 138 48.6
PGR119G1839 Punica granatum HOM05D001991 ORTHO05D002030 1.6e-19 100.9 98 53.1
FAN12G2989 Fragaria x ananassa HOM05D001991 ORTHO05D002030 2.1e-19 100.5 145 46.9
AL5G15170 Arabidopsis lyrata HOM05D001991 ORTHO05D002030 2.7e-19 100.1 147 43.5
THA.LOC104805280 Tarenaya hassleriana HOM05D001991 ORTHO05D002030 2.7e-19 100.1 143 42.7
A06p42040 Brassica napus HOM05D001991 ORTHO05D002030 3.5e-19 99.8 148 44.6
Sp2g15550 Schrenkiella parvula HOM05D001991 ORTHO05D002030 3.5e-19 99.8 146 43.8
BraA06t27121Z Brassica rapa HOM05D001991 ORTHO05D002030 6.0e-19 99.0 144 45.1
FvH4_4g26000 Fragaria vesca HOM05D001991 ORTHO05D002030 7.9e-19 98.6 145 46.2
FAN07G0001 Fragaria x ananassa HOM05D001991 ORTHO05D002030 7.9e-19 98.6 145 46.2
FAN12G4314 Fragaria x ananassa HOM05D001991 ORTHO05D002030 7.9e-19 98.6 145 46.9
arahy.Tifrunner.gnm1.ann1.R6BV62 Arachis hypogaea HOM05D001991 ORTHO05D002030 1.0e-18 98.2 122 47.5
FAN17G1615 Fragaria x ananassa HOM05D001991 ORTHO05D002030 1.0e-18 98.2 145 46.2
BcaC03g17339 Brassica carinata HOM05D001991 ORTHO05D002030 2.3e-18 97.1 147 43.5
C08p46930 Brassica napus HOM05D001991 ORTHO05D002030 3.0e-18 96.7 139 43.9
A09p63480 Brassica napus HOM05D001991 ORTHO05D002030 6.7e-18 95.5 140 43.6
BraA09t41698Z Brassica rapa HOM05D001991 ORTHO05D002030 6.7e-18 95.5 140 43.6
CARHR147420 Cardamine hirsuta HOM05D001991 ORTHO05D002030 6.7e-18 95.5 144 43.8
C02p52860 Brassica napus HOM05D003359 ORTHO05D004472 8.7e-18 95.1 143 44.1
CDE02G2889 Ceratophyllum demersum HOM05D001991 ORTHO05D002030 8.7e-18 95.1 97 55.7
MSTRG.7948 Avicennia marina HOM05D001991 ORTHO05D002030 2.5e-17 93.6 98 51.0
Peaxi162Scf00128g00454 Petunia axillaris HOM05D001991 ORTHO05D002030 3.3e-17 93.2 116 48.3
Thhalv10003946m.g Eutrema salsugineum HOM05D001991 ORTHO05D002030 4.3e-17 92.8 142 44.4
Solyc05g013700.4 Solanum lycopersicum HOM05D001991 ORTHO05D002030 7.4e-17 92.0 116 49.1
Sopen05g008610 Solanum pennellii HOM05D001991 ORTHO05D002030 9.6e-17 91.7 113 50.4
MSTRG.558 Avicennia marina HOM05D001991 ORTHO05D002030 2.1e-16 90.5 98 53.1
BcaB08g34234 Brassica carinata HOM05D001991 ORTHO05D002030 2.1e-16 90.5 148 39.9
CAN.G272.2 Capsicum annuum HOM05D001991 ORTHO05D002030 3.6e-16 89.7 114 49.1
PGSC0003DMG400018596 Solanum tuberosum HOM05D001991 ORTHO05D002030 1.1e-15 88.2 113 48.7
Os04g0480100 Oryza sativa ssp. japonica HOM05D001991 ORTHO05D002030 1.8e-15 87.4 141 45.4
Nitab4.5_0002653g0010 Nicotiana tabacum HOM05D001991 ORTHO05D002030 2.4e-15 87.0 108 49.1
Oeu059773.2 Olea europaea HOM05D001991 ORTHO05D002030 3.1e-15 86.7 92 54.3
Nitab4.5_0000229g0070 Nicotiana tabacum HOM05D001991 ORTHO05D002030 6.9e-15 85.5 108 48.1
HanXRQChr12g0371941 Helianthus annuus HOM05D001991 ORTHO05D002030 1.2e-14 84.7 194 35.1
SGA_v2.0_scaffold63G21739 Striga asiatica HOM05D001991 ORTHO05D002030 2.0e-14 84.0 115 47.0
Lsat_1_v5_gn_8_152681 Lactuca sativa HOM05D001991 ORTHO05D002030 2.6e-14 83.6 136 43.4
ECA233G4229 Erigeron canadensis HOM05D003359 ORTHO05D004472 4.5e-14 82.8 91 58.2
Migut.K00613 Erythranthe guttata HOM05D001991 ORTHO05D002030 7.6e-14 82.0 200 33.0
SalBow8G0331 Salvia bowleyana HOM05D001991 ORTHO05D002030 4.9e-13 79.3 94 46.8
HPP92_024687 Vanilla planifolia HOM05D001991 ORTHO05D002030 6.4e-13 79.0 149 36.9
Migut.E00212 Erythranthe guttata HOM05D001991 ORTHO05D002030 1.9e-12 77.4 96 47.9
SEGI_18333 Sequoiadendron giganteum HOM05D001991 ORTHO05D002030 4.6e-11 72.8 144 41.0
HPP92_006183 Vanilla planifolia HOM05D001991 ORTHO05D002030 6.0e-11 72.4 132 37.9
SGA_v2.0_scaffold87G27064 Striga asiatica HOM05D001991 ORTHO05D002030 7.9e-11 72.0 97 46.4
Zm00001eb079540 Zea mays HOM05D001991 ORTHO05D002030 7.9e-11 72.0 143 40.6
BolC2t11380H Brassica oleracea HOM05D001991 ORTHO05D002030 1.0e-10 71.6 128 39.8
Zm00001eb424960 Zea mays HOM05D001991 ORTHO05D002030 1.8e-10 70.9 143 39.2
Os02g0595800 Oryza sativa ssp. japonica HOM05D001991 ORTHO05D002030 2.3e-10 70.5 143 36.4
Hma1.2p1_3236F.1_g334280 Hydrangea macrophylla HOM05D001991 ORTHO05D002030 1.9e-09 67.4 39 82.1
C02p53060 Brassica napus HOM05D001991 ORTHO05D002030 7.4e-09 65.5 88 45.5
C02p53040 Brassica napus HOM05D001991 ORTHO05D002030 9.6e-09 65.1 88 45.5
Peaxi162Scf00074g01126 Petunia axillaris HOM05D001991 ORTHO05D002030 2.1e-08 63.9 113 41.6
unitig_52.g17179 Utricularia gibba HOM05D001991 ORTHO05D002030 3.7e-08 63.2 87 39.1
Lsat_1_v5_gn_4_3980 Lactuca sativa HOM05D001991 ORTHO05D002030 5.8e-06 55.8 108 39.8


User provided reference genes

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