Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015544 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 3.5e-49 198.0 101 100.0
CSS0011716 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 2.6e-36 155.2 101 83.2
CSS0020995 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 2.6e-28 128.6 127 60.6
CSS0006325 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 8.2e-22 107.1 100 63.0
CSS0014629 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 8.2e-22 107.1 100 63.0
CSS0046042 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 2.2e-19 99.0 70 74.3
Actinidia09998 Actinidia chinensis HOM05D004612 ORTHO05D004940 2.1e-17 92.4 92 57.6
Rhsim07G0018100 Rhododendron simsii HOM05D004612 ORTHO05D004940 2.1e-17 92.4 66 69.7
RcHm_v2.0_Chr1g0353691 Rosa chinensis HOM05D004612 ORTHO05D004940 2.3e-16 89.0 75 61.3
vmacro13313 Vaccinium macrocarpon HOM05D004612 ORTHO05D004940 2.3e-16 89.0 70 62.9
COL.COLO4_12673 Corchorus olitorius HOM05D004612 ORTHO05D004940 3.9e-16 88.2 106 49.1
Gohir.D11G091300 Gossypium hirsutum HOM05D004612 ORTHO05D004940 5.1e-16 87.8 63 69.8
Gorai.007G097300 Gossypium raimondii HOM05D004612 ORTHO05D004940 5.1e-16 87.8 63 69.8
Duzib133G0359 Durio zibethinus HOM05D004612 ORTHO05D004940 6.7e-16 87.4 74 59.5
CSS0007536 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 1.5e-15 86.3 58 81.0
GSVIVG01026844001 Vitis vinifera HOM05D004612 ORTHO05D004940 1.5e-15 86.3 55 78.2
Gohir.A11G082600 Gossypium hirsutum HOM05D004612 ORTHO05D004940 2.0e-15 85.9 63 68.3
vmacro22088 Vaccinium macrocarpon HOM05D004612 ORTHO05D004940 2.0e-15 85.9 71 60.6
Ciclev10024326m.g Citrus clementina HOM05D004612 ORTHO05D004940 2.6e-15 85.5 60 68.3
Eucgr.D02267 Eucalyptus grandis HOM05D004612 ORTHO05D004940 3.3e-15 85.1 98 52.0
Glyma.03G096900 Glycine max HOM05D004612 ORTHO05D004940 3.3e-15 85.1 55 76.4
TWI59G0622 Tripterygium wilfordii HOM05D004612 ORTHO05D004940 3.3e-15 85.1 67 62.7
TWI59G1187 Tripterygium wilfordii HOM05D004612 ORTHO05D004940 3.3e-15 85.1 67 62.7
QL08p049561 Quercus lobata HOM05D004612 ORTHO05D004940 4.4e-15 84.7 55 76.4
Thecc.01G363500 Theobroma cacao HOM05D004612 ORTHO05D004940 4.4e-15 84.7 61 68.9
Cfa003958 Carpinus fangiana HOM05D004612 ORTHO05D004940 5.7e-15 84.3 98 50.0
MD07G1141600 Malus domestica HOM05D004612 ORTHO05D004940 5.7e-15 84.3 98 50.0
Haze_15464 Corylus avellana HOM05D004612 ORTHO05D004940 7.4e-15 84.0 98 50.0
MD01G1053600 Malus domestica HOM05D004612 ORTHO05D004940 7.4e-15 84.0 63 65.1
Phvul.011G160800 Phaseolus vulgaris HOM05D004612 ORTHO05D004940 7.4e-15 84.0 55 76.4
FvH4_7g13631 Fragaria vesca HOM05D004612 ORTHO05D004940 9.7e-15 83.6 105 47.6
FAN06G2470 Fragaria x ananassa HOM05D004612 ORTHO05D004940 9.7e-15 83.6 105 47.6
FAN06G3441 Fragaria x ananassa HOM05D004612 ORTHO05D004940 9.7e-15 83.6 105 47.6
FAN10G2510 Fragaria x ananassa HOM05D004612 ORTHO05D004940 9.7e-15 83.6 105 47.6
Prupe.2G162500 Prunus persica HOM05D004612 ORTHO05D004940 9.7e-15 83.6 101 49.5
PGR031G1383 Punica granatum HOM05D004612 ORTHO05D004940 9.7e-15 83.6 100 50.0
MELO3C006131.2 Cucumis melo HOM05D004612 ORTHO05D004940 1.3e-14 83.2 109 46.8
Nn3g17842 Nelumbo nucifera HOM05D004612 ORTHO05D004940 1.3e-14 83.2 59 71.2
FAN03G2220 Fragaria x ananassa HOM05D004612 ORTHO05D004940 2.2e-14 82.4 101 47.5
Potri.014G080600 Populus trichocarpa HOM05D004612 ORTHO05D004940 2.2e-14 82.4 67 61.2
TAR629G0951 Trochodendron aralioides HOM05D004612 ORTHO05D004940 2.2e-14 82.4 55 74.5
arahy.Tifrunner.gnm1.ann1.4I97V1 Arachis hypogaea HOM05D004612 ORTHO05D004940 3.7e-14 81.6 55 70.9
CsaV3_3G009110 Cucumis sativus L. HOM05D004612 ORTHO05D004940 3.7e-14 81.6 109 45.9
HanXRQChr16g0523031 Helianthus annuus HOM05D004612 ORTHO05D004940 3.7e-14 81.6 61 60.7
VMungo1127G0482 Vigna mungo HOM05D004612 ORTHO05D004940 3.7e-14 81.6 55 74.5
Ca_27541_v3 Cicer arietinum L. HOM05D004612 ORTHO05D004940 4.8e-14 81.3 51 78.4
ClCG05G001720 Citrullus lanatus HOM05D004612 ORTHO05D004940 4.8e-14 81.3 109 45.9
Lj3g0020312 Lotus japonicus HOM05D004612 ORTHO05D004940 4.8e-14 81.3 55 72.7
Hma1.2p1_0033F.1_g020400 Hydrangea macrophylla HOM05D004612 ORTHO05D004940 1.1e-13 80.1 102 49.0
Sed0015875 Sechium edule HOM05D004612 ORTHO05D004940 1.1e-13 80.1 109 45.9
Lalb_Chr10g0097231 Lupinus albus HOM05D004612 ORTHO05D004940 1.4e-13 79.7 55 70.9
Nitab4.5_0010110g0020 Nicotiana tabacum HOM05D004612 ORTHO05D004940 1.4e-13 79.7 60 61.7
CAN.G718.1 Capsicum annuum HOM05D004612 ORTHO05D004940 1.8e-13 79.3 62 58.1
Sabra14G0058500 Salix brachista HOM05D004612 ORTHO05D004940 3.1e-13 78.6 67 59.7
Cpa.g.sc20.34 Carica papaya HOM05D004612 ORTHO05D004940 4.1e-13 78.2 106 42.5
Migut.B01722 Erythranthe guttata HOM05D004612 ORTHO05D004940 5.3e-13 77.8 53 69.8
TPR.G4369 Trifolium pratense HOM05D004612 ORTHO05D004940 5.3e-13 77.8 52 75.0
CSS0040114 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 7.0e-13 77.4 87 56.3
Medtr8g031580 Medicago truncatula HOM05D004612 ORTHO05D004940 7.0e-13 77.4 51 74.5
Manes.12G065000 Manihot esculenta HOM05D004612 ORTHO05D004940 1.2e-12 76.6 60 61.7
Sc07g0008070 Simmondsia chinensis HOM05D004612 ORTHO05D004940 1.2e-12 76.6 59 66.1
Cc02_g37600 Coffea canephora HOM05D004612 ORTHO05D004940 1.6e-12 76.3 57 59.6
Sopen05g028090 Solanum pennellii HOM05D004612 ORTHO05D004940 2.6e-12 75.5 62 56.5
Atru.chr5.446 Acer truncatum HOM05D004612 ORTHO05D004940 4.5e-12 74.7 55 69.1
Nitab4.5_0010827g0010 Nicotiana tabacum HOM05D004612 ORTHO05D004940 4.5e-12 74.7 62 56.5
Solyc05g048770.3 Solanum lycopersicum HOM05D004612 ORTHO05D004940 5.9e-12 74.3 62 54.8
Lsat_1_v5_gn_4_36480 Lactuca sativa HOM05D004612 ORTHO05D004940 7.7e-12 73.9 53 67.9
Oeu004526.1 Olea europaea HOM05D004612 ORTHO05D004940 7.7e-12 73.9 57 64.9
Aa31LG5G400 Aethionema arabicum HOM05D004612 ORTHO05D004940 1.0e-11 73.6 58 55.2
Gorai.005G166700 Gossypium raimondii HOM05D004612 ORTHO05D004940 1.0e-11 73.6 78 51.3
Hund16942 Selenicereus undatus HOM05D004612 ORTHO05D004940 1.0e-11 73.6 54 64.8
MSTRG.17249 Avicennia marina HOM05D004612 ORTHO05D004940 1.7e-11 72.8 57 61.4
CSS0005777 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 1.7e-11 72.8 84 58.3
MBI17_g08173_MAGBIO Magnolia biondii HOM05D004612 ORTHO05D004940 1.7e-11 72.8 98 43.9
Psat4g153800 Pisum sativum HOM05D004612 ORTHO05D004940 1.7e-11 72.8 51 72.5
AT4G00590 Arabidopsis thaliana HOM05D004612 ORTHO05D004940 2.2e-11 72.4 70 47.1
Carub.0006s3663 Capsella rubella HOM05D004612 ORTHO05D004940 2.2e-11 72.4 64 48.4
SalBow3G1907 Salvia bowleyana HOM05D004612 ORTHO05D004940 2.9e-11 72.0 58 63.8
DCAR_008600 Daucus carota HOM05D004612 ORTHO05D004940 3.8e-11 71.6 55 63.6
Oeu014678.1 Olea europaea HOM05D004612 ORTHO05D004940 3.8e-11 71.6 57 61.4
AL6G52840 Arabidopsis lyrata HOM05D004612 ORTHO05D004940 6.5e-11 70.9 70 45.7
ECA234G1569 Erigeron canadensis HOM05D004612 ORTHO05D004940 6.5e-11 70.9 60 56.7
Nitab4.5_0002608g0040 Nicotiana tabacum HOM05D004612 ORTHO05D004940 6.5e-11 70.9 62 53.2
SGA_v2.0_scaffold95G28856 Striga asiatica HOM05D004612 ORTHO05D004940 8.5e-11 70.5 53 67.9
A09p00400 Brassica napus HOM05D004612 ORTHO05D004940 1.5e-10 69.7 70 47.1
HPP92_021103 Vanilla planifolia HOM05D004612 ORTHO05D004940 1.5e-10 69.7 67 49.3
Aqoxy46s002 Aquilegia oxysepala HOM05D004612 ORTHO05D004940 2.5e-10 68.9 53 62.3
PSO063G2700 Papaver somniferum HOM05D004612 ORTHO05D004940 3.2e-10 68.6 51 62.7
PSO782G5368 Papaver somniferum HOM05D004612 ORTHO05D004940 9.4e-10 67.0 49 63.3
AUR62033332 Chenopodium quinoa HOM05D004612 ORTHO05D004940 1.2e-09 66.6 57 57.9
Ah.05g176430 Amaranthus hybridus HOM05D004612 ORTHO05D004940 3.6e-09 65.1 56 60.7
BraA09t35721Z Brassica rapa HOM05D004612 ORTHO05D004940 3.6e-09 65.1 70 44.3
Thhalv10028700m.g Eutrema salsugineum HOM05D004612 ORTHO05D004940 3.6e-09 65.1 70 44.3
HPP92_021084 Vanilla planifolia HOM05D004612 ORTHO05D004940 3.6e-09 65.1 72 48.6
BcaC04g24158 Brassica carinata HOM05D004612 ORTHO05D004940 4.7e-09 64.7 70 42.9
C09p00500 Brassica napus HOM05D004612 ORTHO05D004940 4.7e-09 64.7 70 42.9
BolC9t52984H Brassica oleracea HOM05D004612 ORTHO05D004940 4.7e-09 64.7 70 42.9
CSS0003938 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 4.7e-09 64.7 82 52.4
BcaB01g02261 Brassica carinata HOM05D004612 ORTHO05D004940 8.0e-09 63.9 70 44.3
Dinv32447 Davidia involucrata HOM05D004612 ORTHO05D004940 1.0e-08 63.5 40 80.0
unitig_0.g1278 Utricularia gibba HOM05D004612 ORTHO05D004940 1.0e-08 63.5 58 51.7
FAN01G1921 Fragaria x ananassa HOM05D000092 ORTHO05D004940 1.4e-08 63.2 82 47.6
Prupe.8G034000 Prunus persica HOM05D004612 ORTHO05D004940 1.4e-08 63.2 82 48.8
THA.LOC104801450 Tarenaya hassleriana HOM05D004612 ORTHO05D004940 1.8e-08 62.8 67 47.8
CARHR248760 Cardamine hirsuta HOM05D004612 ORTHO05D004940 5.2e-08 61.2 59 47.5
ATR0680G383 Amborella trichopoda HOM05D004612 ORTHO05D004940 8.8e-08 60.5 52 51.9
CDE05G2136 Ceratophyllum demersum HOM05D004612 ORTHO05D004940 8.8e-08 60.5 91 42.9
BcaNung07163 Brassica carinata HOM05D004612 ORTHO05D004940 2.0e-07 59.3 66 43.9
Sp6g00630 Schrenkiella parvula HOM05D004612 ORTHO05D004940 2.0e-07 59.3 70 41.4
Nitab4.5_0000094g0210 Nicotiana tabacum HOM05D004612 ORTHO05D004940 4.4e-07 58.2 90 37.8
Gorai.005G189400 Gossypium raimondii HOM05D004612 ORTHO05D004940 2.2e-06 55.8 73 41.1
Lj9C580G6 Lonicera japonica HOM05D004612 ORTHO05D004940 3.7e-06 55.1 35 68.6
CiPaw.02G028400 Carya illinoinensis HOM05D004612 ORTHO05D004940 6.3e-06 54.3 33 75.8
vmacro00164 Vaccinium macrocarpon HOM05D004612 ORTHO05D004940 8.2e-06 53.9 45 57.8


User provided reference genes

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