Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015514 Camellia sinensis var. sinensis HOM05D005382 ORTHO05D006795 4.0e-65 251.5 150 100.0
Rhsim08G0203100 Rhododendron simsii HOM05D005382 ORTHO05D006795 1.9e-38 162.9 129 74.4
vmacro16842 Vaccinium macrocarpon HOM05D005382 ORTHO05D006795 1.2e-37 160.2 130 67.7
CSS0039254 Camellia sinensis var. sinensis HOM05D005382 ORTHO05D006795 2.1e-37 159.5 129 82.2
Rhsim12G0185400 Rhododendron simsii HOM05D005382 ORTHO05D006795 3.0e-36 155.6 130 76.9
Hma1.2p1_0329F.1_g127290 Hydrangea macrophylla HOM05D005382 ORTHO05D006795 5.6e-35 151.4 124 66.1
TAR625G1145 Trochodendron aralioides HOM05D005382 ORTHO05D006795 4.8e-34 148.3 129 74.4
QL05p036845 Quercus lobata HOM05D005382 ORTHO05D006795 8.1e-34 147.5 124 65.3
Actinidia08935 Actinidia chinensis HOM05D005382 ORTHO05D006795 1.4e-33 146.7 129 65.9
Manes.11G069200 Manihot esculenta HOM05D005382 ORTHO05D006795 5.3e-33 144.8 129 64.3
Sabra03G0135500 Salix brachista HOM05D005382 ORTHO05D006795 6.9e-33 144.4 128 64.1
Potri.001G041900 Populus trichocarpa HOM05D005382 ORTHO05D006795 2.0e-32 142.9 129 62.8
CiPaw.01G256500 Carya illinoinensis HOM05D005382 ORTHO05D006795 3.4e-32 142.1 130 63.8
CiPaw.02G163400 Carya illinoinensis HOM05D005382 ORTHO05D006795 3.4e-32 142.1 130 63.1
Gohir.D11G079900 Gossypium hirsutum HOM05D005382 ORTHO05D006795 4.5e-32 141.7 130 62.3
Gorai.007G085500 Gossypium raimondii HOM05D005382 ORTHO05D006795 4.5e-32 141.7 130 62.3
MD17G1226400 Malus domestica HOM05D005382 ORTHO05D006795 4.5e-32 141.7 129 62.8
Cfa001857 Carpinus fangiana HOM05D005382 ORTHO05D006795 5.8e-32 141.4 128 63.3
Potri.003G184925 Populus trichocarpa HOM05D005382 ORTHO05D006795 9.9e-32 140.6 129 62.0
Gohir.A11G075200 Gossypium hirsutum HOM05D005382 ORTHO05D006795 1.3e-31 140.2 130 61.5
RcHm_v2.0_Chr2g0132311 Rosa chinensis HOM05D005382 ORTHO05D006795 1.7e-31 139.8 131 61.8
DCAR_021374 Daucus carota HOM05D005382 ORTHO05D006795 2.9e-31 139.0 128 60.9
GSVIVG01016103001 Vitis vinifera HOM05D005382 ORTHO05D006795 4.9e-31 138.3 127 60.6
Sabra01G0028700 Salix brachista HOM05D005382 ORTHO05D006795 6.4e-31 137.9 129 61.2
Dinv21426 Davidia involucrata HOM05D005382 ORTHO05D006795 8.4e-31 137.5 129 74.4
FvH4_6g28270 Fragaria vesca HOM05D005382 ORTHO05D006795 8.4e-31 137.5 131 61.8
FAN05G5289 Fragaria x ananassa HOM05D005382 ORTHO05D006795 8.4e-31 137.5 131 61.8
FAN09G0036 Fragaria x ananassa HOM05D005382 ORTHO05D006795 8.4e-31 137.5 131 61.8
FAN14G0578 Fragaria x ananassa HOM05D005382 ORTHO05D006795 8.4e-31 137.5 131 61.8
Thecc.06G046600 Theobroma cacao HOM05D005382 ORTHO05D006795 1.1e-30 137.1 129 61.2
MD09G1227600 Malus domestica HOM05D005382 ORTHO05D006795 1.9e-30 136.3 129 59.7
CAN.G1008.7 Capsicum annuum HOM05D005382 ORTHO05D006795 4.2e-30 135.2 129 56.6
FAN02G4537 Fragaria x ananassa HOM05D005382 ORTHO05D006795 4.2e-30 135.2 132 60.6
Nn8g40079 Nelumbo nucifera HOM05D005382 ORTHO05D006795 7.1e-30 134.4 131 61.1
Haze_16689 Corylus avellana HOM05D005382 ORTHO05D006795 1.2e-29 133.7 75 89.3
Eucgr.J03130 Eucalyptus grandis HOM05D005382 ORTHO05D006795 1.2e-29 133.7 129 60.5
ECA232G4196 Erigeron canadensis HOM05D005382 ORTHO05D006795 1.6e-29 133.3 129 58.9
Lsat_1_v5_gn_1_30801 Lactuca sativa HOM05D005382 ORTHO05D006795 1.6e-29 133.3 131 60.3
Manes.04G100900 Manihot esculenta HOM05D005382 ORTHO05D006795 1.6e-29 133.3 71 93.0
COL.COLO4_26772 Corchorus olitorius HOM05D005382 ORTHO05D006795 2.1e-29 132.9 132 59.8
SalBow1G1272 Salvia bowleyana HOM05D005382 ORTHO05D006795 2.1e-29 132.9 128 59.4
ClCG09G003490 Citrullus lanatus HOM05D005382 ORTHO05D006795 2.7e-29 132.5 131 59.5
MELO3C023486.2 Cucumis melo HOM05D005382 ORTHO05D006795 2.7e-29 132.5 132 59.8
ECA247G2189 Erigeron canadensis HOM05D005382 ORTHO05D006795 2.7e-29 132.5 129 58.1
Sed0008280 Sechium edule HOM05D005382 ORTHO05D006795 2.7e-29 132.5 131 60.3
Cc04_g05300 Coffea canephora HOM05D005382 ORTHO05D006795 3.5e-29 132.1 129 57.4
Lj5A81T85 Lonicera japonica HOM05D005382 ORTHO05D006795 3.5e-29 132.1 126 69.0
MSTRG.22842 Avicennia marina HOM05D005382 ORTHO05D006795 4.6e-29 131.7 73 89.0
Medtr4g007700 Medicago truncatula HOM05D005382 ORTHO05D006795 4.6e-29 131.7 129 58.1
HanXRQChr04g0100021 Helianthus annuus HOM05D005382 ORTHO05D006795 6.0e-29 131.3 129 57.4
Lj3g0027435 Lotus japonicus HOM05D005382 ORTHO05D006795 6.0e-29 131.3 71 91.5
Oeu003125.1 Olea europaea HOM05D005382 ORTHO05D006795 6.0e-29 131.3 127 59.1
Prupe.3G103600 Prunus persica HOM05D005382 ORTHO05D006795 6.0e-29 131.3 74 87.8
TPR.G3367 Trifolium pratense HOM05D005382 ORTHO05D006795 6.0e-29 131.3 129 58.1
CsaV3_7G031710 Cucumis sativus L. HOM05D005382 ORTHO05D006795 7.9e-29 131.0 128 60.2
Duzib192G0805 Durio zibethinus HOM05D005382 ORTHO05D006795 1.0e-28 130.6 74 86.5
Migut.I00626 Erythranthe guttata HOM05D005382 ORTHO05D006795 1.0e-28 130.6 119 63.0
Lsat_1_v5_gn_4_85061 Lactuca sativa HOM05D005382 ORTHO05D006795 1.0e-28 130.6 71 90.1
Lalb_Chr25g0278731 Lupinus albus HOM05D005382 ORTHO05D006795 1.0e-28 130.6 130 55.4
Glyma.08G220400 Glycine max HOM05D005382 ORTHO05D006795 1.3e-28 130.2 71 90.1
HanXRQChr09g0274181 Helianthus annuus HOM05D005382 ORTHO05D006795 1.3e-28 130.2 129 56.6
PGR102G0492 Punica granatum HOM05D005382 ORTHO05D006795 1.3e-28 130.2 130 59.2
Phvul.008G253200 Phaseolus vulgaris HOM05D005382 ORTHO05D006795 1.8e-28 129.8 71 88.7
VMungo0647G2390 Vigna mungo HOM05D005382 ORTHO05D006795 1.8e-28 129.8 71 88.7
Duzib235G0288 Durio zibethinus HOM05D005382 ORTHO05D006795 2.3e-28 129.4 74 87.8
Psat7g262200 Pisum sativum HOM05D005382 ORTHO05D006795 3.0e-28 129.0 71 88.7
Nitab4.5_0004738g0090 Nicotiana tabacum HOM05D005382 ORTHO05D006795 3.9e-28 128.6 129 56.6
Ah.14g085670 Amaranthus hybridus HOM05D005382 ORTHO05D006795 5.1e-28 128.3 76 84.2
MSTRG.11221 Avicennia marina HOM05D005382 ORTHO05D006795 5.1e-28 128.3 127 59.1
Nn8g40087 Nelumbo nucifera HOM05D005382 ORTHO05D006795 5.1e-28 128.3 129 58.9
Glyma.07G021400 Glycine max HOM05D005382 ORTHO05D006795 6.7e-28 127.9 71 88.7
THA.LOC104808172 Tarenaya hassleriana HOM05D005382 ORTHO05D006795 6.7e-28 127.9 71 85.9
TWI75G0559 Tripterygium wilfordii HOM05D005382 ORTHO05D006795 6.7e-28 127.9 126 60.3
Lalb_Chr01g0011991 Lupinus albus HOM05D005382 ORTHO05D006795 1.1e-27 127.1 128 55.5
Nitab4.5_0002700g0060 Nicotiana tabacum HOM05D005382 ORTHO05D006795 1.1e-27 127.1 129 56.6
MSTRG.9395 Avicennia marina HOM05D005382 ORTHO05D006795 1.5e-27 126.7 71 87.3
Aa31LG4G1250 Aethionema arabicum HOM05D005382 ORTHO05D006795 1.9e-27 126.3 72 88.9
Eucgr.F03985 Eucalyptus grandis HOM05D005382 ORTHO05D006795 2.5e-27 125.9 117 60.7
TWI12G1456 Tripterygium wilfordii HOM05D005382 ORTHO05D006795 3.3e-27 125.6 127 55.9
Oeu051555.1 Olea europaea HOM05D005382 ORTHO05D006795 7.4e-27 124.4 73 80.8
SGA_v2.0_scaffold515G52664 Striga asiatica HOM05D003096 ORTHO05D003521 7.4e-27 124.4 71 85.9
Ciclev10026461m.g Citrus clementina HOM05D005382 ORTHO05D006795 1.3e-26 123.6 127 57.5
Os02g0793900 Oryza sativa ssp. japonica HOM05D005382 ORTHO05D006795 1.3e-26 123.6 71 87.3
Peaxi162Scf00314g01032 Petunia axillaris HOM05D005382 ORTHO05D006795 1.3e-26 123.6 129 65.1
Solyc03g117670.4 Solanum lycopersicum HOM05D005382 ORTHO05D006795 1.3e-26 123.6 71 84.5
Sopen03g036580 Solanum pennellii HOM05D005382 ORTHO05D006795 1.3e-26 123.6 71 84.5
PGSC0003DMG400014155 Solanum tuberosum HOM05D005382 ORTHO05D006795 1.3e-26 123.6 71 84.5
BcaNung04166 Brassica carinata HOM05D005382 ORTHO05D006795 2.1e-26 122.9 72 84.7
A07p26960 Brassica napus HOM05D005382 ORTHO05D006795 2.1e-26 122.9 72 84.7
C06p29630 Brassica napus HOM05D005382 ORTHO05D006795 2.1e-26 122.9 72 84.7
BolC6t38128H Brassica oleracea HOM05D005382 ORTHO05D006795 2.1e-26 122.9 72 84.7
BraA07t30340Z Brassica rapa HOM05D005382 ORTHO05D006795 2.1e-26 122.9 72 84.7
CARHR073510 Cardamine hirsuta HOM05D005382 ORTHO05D006795 2.1e-26 122.9 72 84.7
Thhalv10019121m.g Eutrema salsugineum HOM05D005382 ORTHO05D006795 2.1e-26 122.9 125 57.6
EL10Ac8g19398 Beta vulgaris HOM05D005382 ORTHO05D006795 2.8e-26 122.5 71 87.3
BcaC08g47533 Brassica carinata HOM05D005382 ORTHO05D006795 2.8e-26 122.5 73 83.6
A07p44750 Brassica napus HOM05D005382 ORTHO05D006795 2.8e-26 122.5 73 83.6
BolC6t40373H Brassica oleracea HOM05D005382 ORTHO05D006795 2.8e-26 122.5 73 83.6
BraA07t31983Z Brassica rapa HOM05D005382 ORTHO05D006795 2.8e-26 122.5 73 83.6
AT1G80940 Arabidopsis thaliana HOM05D005382 ORTHO05D006795 3.7e-26 122.1 129 53.5
C06p53570 Brassica napus HOM05D005382 ORTHO05D006795 3.7e-26 122.1 126 57.1
Zm00001eb257680 Zea mays HOM05D005382 ORTHO05D006795 3.7e-26 122.1 128 60.9
BcaB02g07237 Brassica carinata HOM05D005382 ORTHO05D006795 6.2e-26 121.3 125 56.0
BcaB02g08711 Brassica carinata HOM05D005382 ORTHO05D006795 8.2e-26 120.9 126 57.9
CDE04G1090 Ceratophyllum demersum HOM05D005382 ORTHO05D006795 8.2e-26 120.9 71 83.1
MBI15_g08404_MAGBIO Magnolia biondii HOM05D005382 ORTHO05D006795 1.4e-25 120.2 73 83.6
Carub.0002s2660 Capsella rubella HOM05D005382 ORTHO05D006795 1.8e-25 119.8 125 55.2
Sp5g34800 Schrenkiella parvula HOM05D005382 ORTHO05D006795 3.1e-25 119.0 125 55.2
SGA_v2.0_scaffold74G24593 Striga asiatica HOM05D005382 ORTHO05D006795 4.0e-25 118.6 69 81.2
AUR62032996 Chenopodium quinoa HOM05D005382 ORTHO05D006795 5.3e-25 118.2 128 58.6
Hund12559 Selenicereus undatus HOM05D005382 ORTHO05D006795 5.3e-25 118.2 127 55.9
CDE07G1687 Ceratophyllum demersum HOM05D005382 ORTHO05D006795 1.2e-24 117.1 75 77.3
Sc12g0008250 Simmondsia chinensis HOM05D005382 ORTHO05D006795 1.5e-24 116.7 128 57.0
CANSAT56G2690 Cannabis sativa HOM05D005382 ORTHO05D006795 2.0e-24 116.3 71 81.7
BcaB07g33703 Brassica carinata HOM05D005382 ORTHO05D006795 2.6e-24 115.9 80 72.5
ATR0580G392 Amborella trichopoda HOM05D005382 ORTHO05D006795 3.4e-24 115.5 124 56.5
AL2G40440 Arabidopsis lyrata HOM05D005382 ORTHO05D006795 4.5e-24 115.2 125 56.0
AUR62034069 Chenopodium quinoa HOM05D007611 ORTHO05D006795 4.5e-24 115.2 127 57.5
PSO063G0682 Papaver somniferum HOM05D005382 ORTHO05D006795 4.5e-24 115.2 72 79.2
PSO782G0145 Papaver somniferum HOM05D005382 ORTHO05D006795 1.0e-23 114.0 120 53.3
Mapoly0128s0009 Marchantia polymorpha HOM05D005382 ORTHO05D006795 7.1e-22 107.8 70 72.9
HPP92_010348 Vanilla planifolia HOM05D005382 ORTHO05D006795 9.3e-22 107.5 75 76.0
Pp3c16_25700 Physcomitrium patens HOM05D005382 ORTHO05D006795 4.6e-21 105.1 70 71.4
Pp3c25_9780 Physcomitrium patens HOM05D005382 ORTHO05D006795 4.6e-21 105.1 70 71.4
SEGI_41275 Sequoiadendron giganteum HOM05D005382 ORTHO05D006795 4.6e-21 105.1 69 75.4
SMO145G0139 Selaginella moellendorffii HOM05D005382 ORTHO05D006795 3.0e-20 102.4 71 67.6
BcaB07g33704 Brassica carinata HOM05D005382 ORTHO05D006795 8.7e-20 100.9 62 80.6
BcaB07g33705 Brassica carinata HOM05D005382 ORTHO05D006795 8.7e-20 100.9 62 80.6
Cpa.g.c28380.1 Carica papaya HOM05D005382 ORTHO05D006795 1.9e-19 99.8 62 79.0
arahy.Tifrunner.gnm1.ann1.7IZ6IW Arachis hypogaea HOM05D005382 ORTHO05D006795 1.6e-18 96.7 61 82.0
arahy.Tifrunner.gnm1.ann1.HUQR60 Arachis hypogaea HOM05D005382 ORTHO05D006795 1.6e-18 96.7 61 82.0
SEGI_02613 Sequoiadendron giganteum HOM05D005382 ORTHO05D006795 7.2e-14 81.3 52 71.2


User provided reference genes

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