Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015485 Camellia sinensis var. sinensis HOM05D003666 ORTHO05D004770 2.4e-204 715.3 362 100.0
HanXRQMTg0579201 Helianthus annuus HOM05D003666 ORTHO05D004770 1.4e-127 460.3 508 57.7
Sed0020058 Sechium edule HOM05D003666 ORTHO05D004770 3.2e-124 449.1 503 57.3
BraSC177t45766Z Brassica rapa HOM05D003666 ORTHO05D004770 3.1e-111 406.0 487 55.6
DCAR_032432 Daucus carota HOM05D003666 ORTHO05D004770 1.4e-108 397.1 508 52.8
PSO210G0035 Papaver somniferum HOM05D003666 ORTHO05D004770 5.6e-105 385.2 500 52.4
ATMG00580 Arabidopsis thaliana HOM05D003666 ORTHO05D004770 1.6e-104 383.6 508 52.0
LjContig00439g0017912 Lotus japonicus HOM05D003666 ORTHO05D004770 1.6e-99 367.1 664 42.2
LjContig00439g0019818 Lotus japonicus HOM05D003666 ORTHO05D004770 1.6e-99 367.1 664 42.2
Sed0023789 Sechium edule HOM05D003666 ORTHO05D004770 5.4e-92 342.0 416 55.8
Aa31csc553G70 Aethionema arabicum HOM05D003666 ORTHO05D004770 7.6e-78 295.0 412 49.3
SHI12194 Sapria himalayana HOM05D003666 ORTHO05D004770 1.9e-76 290.4 439 49.0
Nitab4.5_0000172g1740 Nicotiana tabacum HOM05D003666 ORTHO05D004770 7.1e-76 288.5 674 37.1
CANSAT16G0036 Cannabis sativa HOM05D003666 ORTHO05D004770 3.0e-74 283.1 359 53.8
Medtr0082s0090 Medicago truncatula HOM05D003666 ORTHO05D004770 3.0e-66 256.5 510 39.6
BraSC48t46269Z Brassica rapa HOM05D003666 ORTHO05D004770 5.5e-60 235.7 211 65.9
Lj2C1223T18 Lonicera japonica HOM05D003666 ORTHO05D004770 1.2e-59 234.6 153 81.7
Lsat_1_v5_gn_8_46780 Lactuca sativa HOM05D003666 ORTHO05D004770 4.6e-59 232.6 153 81.7
RcHm_v2.0_MTg0498711 Rosa chinensis HOM05D003666 ORTHO05D004770 8.8e-58 228.4 153 80.4
TAR626G1001 Trochodendron aralioides HOM05D003666 ORTHO05D004770 8.8e-58 228.4 153 79.7
Aqoxy12s018 Aquilegia oxysepala HOM05D003666 ORTHO05D004770 4.3e-57 226.1 153 79.1
Nitab4.5_0006007g0010 Nicotiana tabacum HOM05D003666 ORTHO05D004770 5.7e-57 225.7 153 79.7
Solyc00g500172.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 5.7e-57 225.7 153 79.7
Solyc00g500189.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 5.7e-57 225.7 153 79.7
Solyc00g500253.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 5.7e-57 225.7 153 79.7
Lalb_Chr00c24g0407401 Lupinus albus HOM05D003666 ORTHO05D004770 4.8e-56 222.6 153 78.4
TPR.G36115 Trifolium pratense HOM05D003666 ORTHO05D004770 4.8e-56 222.6 153 78.4
Potri.007G061861 Populus trichocarpa HOM05D003666 ORTHO05D004770 8.2e-56 221.9 153 79.1
BNapus_Darmor_BZH_scaffold_234p00230 Brassica napus HOM05D003666 ORTHO05D004770 1.4e-55 221.1 153 79.1
Ah.10g028200 Amaranthus hybridus HOM05D003666 ORTHO05D004770 1.5e-54 217.6 153 78.4
Ah.10g028750 Amaranthus hybridus HOM05D003666 ORTHO05D004770 1.5e-54 217.6 153 78.4
BcaC05g26880 Brassica carinata HOM05D003666 ORTHO05D004770 2.0e-54 217.2 153 78.4
CDE02G1260 Ceratophyllum demersum HOM05D003666 ORTHO05D004770 3.4e-54 216.5 147 79.6
BraSC77t46648Z Brassica rapa HOM05D003666 ORTHO05D004770 7.7e-54 215.3 372 46.0
Glyma.10G098500 Glycine max HOM05D003666 ORTHO05D004770 2.5e-52 210.3 153 73.9
BcaC05g26875 Brassica carinata HOM05D003666 ORTHO05D004770 1.7e-48 197.6 148 75.0
Lalb_Chr00c54g0413611 Lupinus albus HOM05D003666 ORTHO05D004770 6.3e-48 195.7 131 82.4
arahy.Tifrunner.gnm1.ann1.U43JHG Arachis hypogaea HOM05D003666 ORTHO05D004770 2.4e-47 193.7 134 79.1
arahy.Tifrunner.gnm1.ann1.WXF1XT Arachis hypogaea HOM05D003666 ORTHO05D004770 2.4e-47 193.7 134 79.1
CARHR288310 Cardamine hirsuta HOM05D003666 ORTHO05D004770 8.5e-45 185.3 134 76.1
Thhalv10015926m.g Eutrema salsugineum HOM05D003666 ORTHO05D004770 1.4e-44 184.5 136 75.0
Ah.10g028210 Amaranthus hybridus HOM05D003666 ORTHO05D004770 9.4e-44 181.8 256 50.4
Ah.10g028760 Amaranthus hybridus HOM05D003666 ORTHO05D004770 9.4e-44 181.8 256 50.4
HanXRQChr02g0045121 Helianthus annuus HOM05D003666 ORTHO05D004770 2.3e-42 177.2 274 47.1
Solyc10g061990.3 Solanum lycopersicum HOM05D003666 ORTHO05D004770 2.6e-41 173.7 159 62.9
Gorai.001G166300 Gossypium raimondii HOM05D003666 ORTHO05D004770 4.1e-39 166.4 510 33.5
Sp3g25750 Schrenkiella parvula HOM05D003666 ORTHO05D004770 9.1e-39 165.2 256 48.0
BolC4t23491H Brassica oleracea HOM05D003666 ORTHO05D004770 5.0e-37 159.5 271 47.2
Ca_14829_v3 Cicer arietinum L. HOM05D003666 ORTHO05D004770 8.5e-37 158.7 282 44.7
C04p19570 Brassica napus HOM05D003666 ORTHO05D004770 2.1e-35 154.1 261 47.5
Lsat_1_v5_gn_4_39621 Lactuca sativa HOM05D003666 ORTHO05D004770 2.1e-35 154.1 236 45.8
AUR62042334 Chenopodium quinoa HOM05D003666 ORTHO05D004770 6.1e-35 152.5 168 57.7
Lj2A1228G70 Lonicera japonica HOM05D003666 ORTHO05D004770 2.6e-33 147.1 387 34.6
Nitab4.5_0000172g0120 Nicotiana tabacum HOM05D003666 ORTHO05D004770 1.7e-32 144.4 242 43.4
Cfa023044 Carpinus fangiana HOM05D003666 ORTHO05D004770 8.5e-29 132.1 67 100.0
Solyc00g013180.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 9.4e-28 128.6 139 58.3
Solyc00g500187.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 2.7e-27 127.1 130 58.5
Solyc00g500251.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 2.7e-27 127.1 130 58.5
Sopen11g018270 Solanum pennellii HOM05D003666 ORTHO05D004770 2.7e-27 127.1 130 58.5
CAN.G1.7 Capsicum annuum HOM05D003666 ORTHO05D004770 3.6e-27 126.7 72 84.7
CAN.G65.28 Capsicum annuum HOM05D003666 ORTHO05D004770 8.0e-27 125.6 130 57.7
Lj2A1228G69 Lonicera japonica HOM05D003666 ORTHO05D004770 8.0e-27 125.6 151 53.6
RcHm_v2.0_MTg0498651 Rosa chinensis HOM05D003666 ORTHO05D004770 1.8e-26 124.4 139 56.8
Peaxi162Scf01767g00002 Petunia axillaris HOM05D003666 ORTHO05D004770 3.0e-26 123.6 127 59.8
Potri.007G061921 Populus trichocarpa HOM05D003666 ORTHO05D004770 4.0e-26 123.2 164 50.0
AL3G44310 Arabidopsis lyrata HOM05D003666 ORTHO05D004770 5.2e-26 122.9 130 56.9
Peaxi162Scf00530g00005 Petunia axillaris HOM05D003666 ORTHO05D004770 6.8e-26 122.5 71 87.3
unitig_87.g28023 Utricularia gibba HOM05D003666 ORTHO05D004770 6.8e-26 122.5 130 56.2
Nitab4.5_0000172g0090 Nicotiana tabacum HOM05D003666 ORTHO05D004770 1.5e-25 121.3 132 56.1
Lalb_Chr00c24g0407361 Lupinus albus HOM05D003666 ORTHO05D004770 2.0e-25 120.9 130 56.2
Lalb_Chr01g0010981 Lupinus albus HOM05D003666 ORTHO05D004770 2.0e-25 120.9 130 56.2
arahy.Tifrunner.gnm1.ann1.DQZY30 Arachis hypogaea HOM05D003666 ORTHO05D004770 2.6e-25 120.6 148 52.7
arahy.Tifrunner.gnm1.ann1.G61VPX Arachis hypogaea HOM05D003666 ORTHO05D004770 2.6e-25 120.6 148 52.7
Aa31csc553G50 Aethionema arabicum HOM05D003666 ORTHO05D004770 3.4e-25 120.2 130 56.2
Nn1g10170 Nelumbo nucifera HOM05D003666 ORTHO05D004770 4.4e-25 119.8 89 69.7
BolSC28t60438H Brassica oleracea HOM05D003666 ORTHO05D004770 7.5e-25 119.0 60 95.0
CAN.G1001.36 Capsicum annuum HOM05D003666 ORTHO05D004770 9.8e-25 118.6 71 84.5
Hma1.2p1_0257F.1_g103600 Hydrangea macrophylla HOM05D003666 ORTHO05D004770 1.3e-24 118.2 71 84.5
Medtr0082s0060 Medicago truncatula HOM05D003666 ORTHO05D004770 1.7e-24 117.9 130 55.4
Nn1g09940 Nelumbo nucifera HOM05D003666 ORTHO05D004770 2.2e-24 117.5 71 84.5
Lalb_Chr06g0172221 Lupinus albus HOM05D003666 ORTHO05D004770 1.1e-23 115.2 130 53.8
Lalb_Chr06g0172341 Lupinus albus HOM05D003666 ORTHO05D004770 1.1e-23 115.2 130 53.8
CAN.G85.17 Capsicum annuum HOM05D003666 ORTHO05D004770 4.1e-23 113.2 71 81.7
Psat4g185400 Pisum sativum HOM05D003666 ORTHO05D004770 4.1e-23 113.2 130 53.1
Lj2A1223T77 Lonicera japonica HOM05D003666 ORTHO05D004770 5.4e-23 112.8 204 43.1
SabraMtG0002200 Salix brachista HOM05D003666 ORTHO05D004770 5.4e-23 112.8 204 43.1
Nitab4.5_0006085g0010 Nicotiana tabacum HOM05D003666 ORTHO05D004770 2.0e-22 110.9 72 77.8
SEGI_24024 Sequoiadendron giganteum HOM05D003666 ORTHO05D004770 1.0e-21 108.6 68 77.9
SEGI_34311 Sequoiadendron giganteum HOM05D003666 ORTHO05D004770 1.0e-21 108.6 68 77.9
Gohir.D09G016300 Gossypium hirsutum HOM05D003666 ORTHO05D004770 1.7e-21 107.8 127 53.5
arahy.Tifrunner.gnm1.ann1.75QRLF Arachis hypogaea HOM05D003666 ORTHO05D004770 6.5e-21 105.9 192 42.7
arahy.Tifrunner.gnm1.ann1.ZBC6LT Arachis hypogaea HOM05D003666 ORTHO05D004770 6.5e-21 105.9 192 42.7
BolC6t36214H Brassica oleracea HOM05D003666 ORTHO05D004770 8.6e-21 105.5 125 52.0
SalBow1G6983 Salvia bowleyana HOM05D003666 ORTHO05D004770 2.5e-20 104.0 164 46.3
Lsat_1_v5_gn_3_108200 Lactuca sativa HOM05D003666 ORTHO05D004770 2.1e-19 100.9 191 42.4
Dinv06695 Davidia involucrata HOM05D003666 ORTHO05D004770 5.2e-18 96.3 47 100.0
SHI15675 Sapria himalayana HOM05D003666 ORTHO05D004770 3.7e-16 90.1 128 47.7
SHI21047 Sapria himalayana HOM05D003666 ORTHO05D004770 3.7e-16 90.1 68 70.6
Nitab4.5_0000172g1340 Nicotiana tabacum HOM05D003666 ORTHO05D004770 6.3e-16 89.4 233 36.9
Solyc10g045750.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 1.4e-15 88.2 65 73.8
arahy.Tifrunner.gnm1.ann1.AQ5GJP Arachis hypogaea HOM05D003666 ORTHO05D004770 2.0e-14 84.3 48 85.4
SHI04382 Sapria himalayana HOM05D003666 ORTHO05D004770 2.0e-14 84.3 51 76.5
Gohir.A12G076865 Gossypium hirsutum HOM05D003666 ORTHO05D004770 3.8e-13 80.1 109 48.6
Lsat_1_v5_gn_3_105380 Lactuca sativa HOM05D003666 ORTHO05D004770 3.8e-13 80.1 42 97.6
SEGI_23011 Sequoiadendron giganteum HOM05D003666 ORTHO05D004770 8.6e-13 79.0 69 63.8
BolSC28t60439H Brassica oleracea HOM05D003666 ORTHO05D004770 5.6e-12 76.3 42 92.9
SHI36046 Sapria himalayana HOM05D003666 ORTHO05D004770 9.5e-12 75.5 207 39.1
TPR.G32909 Trifolium pratense HOM05D003666 ORTHO05D004770 6.1e-11 72.8 45 80.0
Haze_26858 Corylus avellana HOM05D000729 ORTHO05D001063 4.0e-10 70.1 180 30.6
Thhalv10015949m.g Eutrema salsugineum HOM05D003666 ORTHO05D004770 4.0e-10 70.1 105 48.6
Nitab4.5_0001788g0230 Nicotiana tabacum HOM05D003666 ORTHO05D004770 5.2e-10 69.7 100 48.0
Solyc10g062000.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 6.8e-10 69.3 51 68.6
SHI21046 Sapria himalayana HOM05D003666 ORTHO05D004770 1.5e-09 68.2 34 88.2
arahy.Tifrunner.gnm1.ann1.W0GCEN Arachis hypogaea HOM05D003666 ORTHO05D004770 3.4e-09 67.0 36 97.2
SHI36047 Sapria himalayana HOM05D003666 ORTHO05D004770 3.4e-09 67.0 37 83.8
Nitab4.5_0001291g0020 Nicotiana tabacum HOM05D003666 ORTHO05D004770 7.5e-09 65.9 38 86.8
SHI36048 Sapria himalayana HOM05D003666 ORTHO05D004770 7.5e-09 65.9 37 81.1
SHI36045 Sapria himalayana HOM05D003666 ORTHO05D004770 1.7e-08 64.7 40 75.0
Phvul.L002937 Phaseolus vulgaris HOM05D003666 ORTHO05D004770 4.1e-07 60.1 42 73.8
FAN09G4889 Fragaria x ananassa HOM05D003666 ORTHO05D004770 5.4e-07 59.7 124 40.3
RcHm_v2.0_MTg0498681 Rosa chinensis HOM05D003666 ORTHO05D004770 5.4e-07 59.7 124 40.3
Solyc00g500171.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 5.4e-07 59.7 124 40.3
Solyc00g500188.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 5.4e-07 59.7 124 40.3
Solyc00g500252.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 5.4e-07 59.7 124 40.3
Sopen11g018260 Solanum pennellii HOM05D003666 ORTHO05D004770 5.4e-07 59.7 124 40.3
Potri.007G061881 Populus trichocarpa HOM05D003666 ORTHO05D004770 9.2e-07 58.9 124 40.3
unitig_87.g28022 Utricularia gibba HOM05D003666 ORTHO05D004770 9.2e-07 58.9 124 40.3
TAR626G0972 Trochodendron aralioides HOM05D003666 ORTHO05D004770 2.7e-06 57.4 107 43.0
Lalb_Chr00c24g0407381 Lupinus albus HOM05D003666 ORTHO05D004770 4.6e-06 56.6 112 41.1
Lalb_Chr02g0154061 Lupinus albus HOM05D003666 ORTHO05D004770 4.6e-06 56.6 112 41.1


User provided reference genes

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