Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015479 Camellia sinensis var. sinensis HOM05D000726 ORTHO05D007554 0.0e+00 2404.8 1253 100.0
CSS0022432 Camellia sinensis var. sinensis HOM05D000726 ORTHO05D007554 0.0e+00 2345.5 1253 98.0
vmacro05404 Vaccinium macrocarpon HOM05D000726 ORTHO05D007554 0.0e+00 1816.6 1275 76.2
Actinidia36435 Actinidia chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1813.5 1263 76.8
Rhsim10G0100700 Rhododendron simsii HOM05D000726 ORTHO05D007554 0.0e+00 1570.1 1210 71.5
TAR376G0399 Trochodendron aralioides HOM05D000726 ORTHO05D007554 0.0e+00 1559.3 1270 66.1
Haze_15292 Corylus avellana HOM05D000726 ORTHO05D007554 0.0e+00 1548.1 1272 66.3
Cfa004123 Carpinus fangiana HOM05D000726 ORTHO05D007554 0.0e+00 1515.7 1273 65.0
QL06p039670 Quercus lobata HOM05D000726 ORTHO05D007554 0.0e+00 1501.5 1269 64.8
Dinv26921 Davidia involucrata HOM05D000726 ORTHO05D007554 0.0e+00 1469.1 1015 76.7
Nitab4.5_0001417g0030 Nicotiana tabacum HOM05D000726 ORTHO05D007554 0.0e+00 1462.2 1262 61.8
Manes.13G112300 Manihot esculenta HOM05D000726 ORTHO05D007554 0.0e+00 1453.0 1263 62.2
MD02G1184600 Malus domestica HOM05D000726 ORTHO05D007554 0.0e+00 1441.8 1268 61.3
Atru.chr3.177 Acer truncatum HOM05D000726 ORTHO05D007554 0.0e+00 1440.6 1258 62.0
Nitab4.5_0006813g0010 Nicotiana tabacum HOM05D000726 ORTHO05D007554 0.0e+00 1427.2 1280 60.4
RcHm_v2.0_Chr2g0138631 Rosa chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1424.8 1271 60.9
Ciclev10024730m.g Citrus clementina HOM05D000726 ORTHO05D007554 0.0e+00 1420.2 1262 60.9
PGSC0003DMG400009094 Solanum tuberosum HOM05D000726 ORTHO05D007554 0.0e+00 1419.8 1260 60.6
Sopen03g007820 Solanum pennellii HOM05D000726 ORTHO05D007554 0.0e+00 1417.9 1260 60.6
FAN05G3645 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1414.4 1260 60.8
Nn4g25316 Nelumbo nucifera HOM05D000726 ORTHO05D007554 0.0e+00 1411.4 1270 60.9
Solyc03g044020.4 Solanum lycopersicum HOM05D000726 ORTHO05D007554 0.0e+00 1409.8 1260 60.4
Duzib147G0272 Durio zibethinus HOM05D000726 ORTHO05D007554 0.0e+00 1403.3 1259 60.8
Potri.007G055400 Populus trichocarpa HOM05D000726 ORTHO05D007554 0.0e+00 1402.5 1266 61.8
FvH4_6g31560 Fragaria vesca HOM05D000726 ORTHO05D007554 0.0e+00 1401.3 1260 60.6
Gorai.007G222900 Gossypium raimondii HOM05D000726 ORTHO05D007554 0.0e+00 1401.0 1258 59.2
TWI09G1290 Tripterygium wilfordii HOM05D000726 ORTHO05D007554 0.0e+00 1399.4 1268 60.4
Gohir.D11G207900 Gossypium hirsutum HOM05D000726 ORTHO05D007554 0.0e+00 1396.3 1258 59.1
FAN14G0573 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1392.9 1260 60.1
Gohir.A11G215400 Gossypium hirsutum HOM05D000726 ORTHO05D007554 0.0e+00 1391.3 1258 58.9
CAN.G278.12 Capsicum annuum HOM05D000726 ORTHO05D007554 0.0e+00 1386.3 1259 60.0
CANSAT01G3261 Cannabis sativa HOM05D000726 ORTHO05D007554 0.0e+00 1383.6 1276 59.4
MSTRG.23676 Avicennia marina HOM05D000726 ORTHO05D007554 0.0e+00 1376.3 1264 60.0
Peaxi162Scf00118g01929 Petunia axillaris HOM05D000726 ORTHO05D007554 0.0e+00 1360.9 1272 59.1
Migut.H00354 Erythranthe guttata HOM05D000726 ORTHO05D007554 0.0e+00 1354.7 1261 58.6
Sc03g0002340 Simmondsia chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1353.2 1248 58.8
Lj7A95G20 Lonicera japonica HOM05D000726 ORTHO05D007554 0.0e+00 1349.3 1265 61.3
Aqoxy6G02647 Aquilegia oxysepala HOM05D000726 ORTHO05D007554 0.0e+00 1346.6 1267 57.9
HanXRQChr12g0373111 Helianthus annuus HOM05D000726 ORTHO05D007554 0.0e+00 1333.5 1274 56.6
COL.COLO4_11566 Corchorus olitorius HOM05D000726 ORTHO05D007554 0.0e+00 1330.1 1260 57.9
Sed0012994 Sechium edule HOM05D000726 ORTHO05D007554 0.0e+00 1325.8 1275 57.7
Cc07_g07020 Coffea canephora HOM05D000726 ORTHO05D007554 0.0e+00 1322.8 1234 58.9
FAN02G1686 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1320.8 1198 60.4
Hund16395 Selenicereus undatus HOM05D000726 ORTHO05D007554 0.0e+00 1320.4 1251 58.5
ClCG01G017520 Citrullus lanatus HOM05D000726 ORTHO05D007554 0.0e+00 1318.1 1282 58.1
MELO3C007629.2 Cucumis melo HOM05D000726 ORTHO05D007554 0.0e+00 1313.9 1282 57.4
CsaV3_6G044070 Cucumis sativus L. HOM05D000726 ORTHO05D007554 0.0e+00 1313.1 1277 57.8
Phvul.002G011500 Phaseolus vulgaris HOM05D000726 ORTHO05D007554 0.0e+00 1310.0 1263 56.1
Glyma.01G193500 Glycine max HOM05D000726 ORTHO05D007554 0.0e+00 1305.0 1262 56.1
arahy.Tifrunner.gnm1.ann1.1ZHU8Z Arachis hypogaea HOM05D000726 ORTHO05D007554 0.0e+00 1303.1 1272 56.3
PGR102G1358 Punica granatum HOM05D000726 ORTHO05D007554 0.0e+00 1299.6 1267 56.0
SGA_v2.0_scaffold15G07449 Striga asiatica HOM05D000726 ORTHO05D007554 0.0e+00 1297.0 1310 55.3
PSO675G6338 Papaver somniferum HOM05D000726 ORTHO05D007554 0.0e+00 1293.1 1284 56.2
Medtr5g015600 Medicago truncatula HOM05D000726 ORTHO05D007554 0.0e+00 1288.1 1272 55.1
Lsat_1_v5_gn_4_160781 Lactuca sativa HOM05D000726 ORTHO05D007554 0.0e+00 1286.6 1268 55.9
Ca_24700_v3 Cicer arietinum L. HOM05D000726 ORTHO05D007554 0.0e+00 1284.6 1259 55.4
VMungo1215G2083 Vigna mungo HOM05D000726 ORTHO05D007554 0.0e+00 1283.1 1263 54.8
PSO541G0636 Papaver somniferum HOM05D000726 ORTHO05D007554 0.0e+00 1282.7 1271 56.4
Atru.BG.105.p Acer truncatum HOM05D000726 ORTHO05D007554 0.0e+00 1271.9 1107 61.8
EL10Ac6g15628 Beta vulgaris HOM05D000726 ORTHO05D007554 0.0e+00 1271.1 1248 56.4
Lalb_Chr09g0323571 Lupinus albus HOM05D000726 ORTHO05D007554 0.0e+00 1270.4 1267 54.9
TPR.G34847 Trifolium pratense HOM05D000726 ORTHO05D007554 0.0e+00 1270.0 1261 54.7
Lj2g0006912 Lotus japonicus HOM05D000726 ORTHO05D007554 0.0e+00 1269.6 1261 55.7
Eucgr.H02305 Eucalyptus grandis HOM05D000726 ORTHO05D007554 0.0e+00 1266.5 1256 56.2
THA.LOC104819266 Tarenaya hassleriana HOM05D000726 ORTHO05D007554 0.0e+00 1264.2 1261 55.2
ECA232G2303 Erigeron canadensis HOM05D000726 ORTHO05D007554 0.0e+00 1260.4 1277 54.4
arahy.Tifrunner.gnm1.ann1.6361M0 Arachis hypogaea HOM05D000726 ORTHO05D007554 0.0e+00 1260.0 1255 55.7
DCAR_010826 Daucus carota HOM05D000726 ORTHO05D007554 0.0e+00 1250.7 1247 56.1
CARHR056360 Cardamine hirsuta HOM05D000726 ORTHO05D007554 0.0e+00 1238.8 1260 53.7
Ah.03g140460 Amaranthus hybridus HOM05D000726 ORTHO05D007554 0.0e+00 1226.8 1257 55.1
AL2G19510 Arabidopsis lyrata HOM05D000726 ORTHO05D007554 0.0e+00 1226.5 1266 53.2
Aa31LG2G2150 Aethionema arabicum HOM05D000726 ORTHO05D007554 0.0e+00 1214.1 1265 52.6
Sp5g19220 Schrenkiella parvula HOM05D000726 ORTHO05D007554 0.0e+00 1212.6 1261 52.2
AUR62003999 Chenopodium quinoa HOM05D000726 ORTHO05D007554 0.0e+00 1211.1 1255 54.8
Sabra07G0047700 Salix brachista HOM05D000726 ORTHO05D007554 0.0e+00 1197.6 1181 56.9
AT1G64960 Arabidopsis thaliana HOM05D000726 ORTHO05D007554 0.0e+00 1196.0 1264 52.1
Thhalv10023223m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 0.0e+00 1192.9 1262 52.1
FAN09G4729 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1189.9 1200 56.2
Thhalv10000018m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 0.0e+00 1175.6 1262 51.0
Psat2g171280 Pisum sativum HOM05D000726 ORTHO05D007554 0.0e+00 1160.2 1284 51.0
Thecc.01G071800 Theobroma cacao HOM05D000726 ORTHO05D007554 0.0e+00 1156.7 944 64.8
Prupe.6G221900 Prunus persica HOM05D000726 ORTHO05D007554 0.0e+00 1154.8 945 64.8
BolC6t38979H Brassica oleracea HOM05D000726 ORTHO05D007554 0.0e+00 1131.7 1272 50.6
C06p38860 Brassica napus HOM05D000726 ORTHO05D007554 0.0e+00 1131.3 1274 50.5
BcaB03g15339 Brassica carinata HOM05D000726 ORTHO05D007554 0.0e+00 1122.1 1270 50.0
SHI31766 Sapria himalayana HOM05D000726 ORTHO05D007554 0.0e+00 1120.9 1260 51.2
BraA07t30892Z Brassica rapa HOM05D000726 ORTHO05D007554 0.0e+00 1079.3 1273 49.4
Cpa.g.sc6.26 Carica papaya HOM05D000726 ORTHO05D007554 0.0e+00 1077.0 872 65.7
Carub.0002s1010 Capsella rubella HOM05D000726 ORTHO05D007554 2.6e-298 1029.2 1056 52.6
Thhalv10001287m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 2.6e-298 1029.2 1263 47.4
Thhalv10006613m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 1.3e-297 1026.9 1222 48.6
AUR62040247 Chenopodium quinoa HOM05D000726 ORTHO05D007554 1.0e-278 964.1 992 54.6
GSVIVG01000124001 Vitis vinifera HOM05D000726 ORTHO05D007554 5.9e-263 911.8 1049 52.0
A07p32680 Brassica napus HOM05D000726 ORTHO05D007554 1.6e-255 887.1 857 56.9
CDE04G3158 Ceratophyllum demersum HOM05D000726 ORTHO05D007554 9.2e-248 861.3 1233 43.9
SalBow3G2688 Salvia bowleyana HOM05D000726 ORTHO05D007554 1.9e-245 853.6 911 53.0
unitig_0.g505 Utricularia gibba HOM05D000726 ORTHO05D007554 2.5e-245 853.2 1296 41.7
ATR0208G028 Amborella trichopoda HOM05D000726 ORTHO05D007554 3.9e-238 829.3 970 49.5
Zm00001eb051460 Zea mays HOM05D000726 ORTHO05D007554 2.0e-234 817.0 1129 42.9
Os03g0616500 Oryza sativa ssp. japonica HOM05D000726 ORTHO05D007554 2.1e-183 647.5 802 44.5
HPP92_014039 Vanilla planifolia HOM05D000726 ORTHO05D007554 7.0e-179 632.5 569 58.7
SEGI_06920 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 5.0e-177 626.3 884 41.4
Mapoly0045s0033 Marchantia polymorpha HOM05D000726 ORTHO05D007554 5.3e-171 606.3 1120 35.8
SMO364G0657 Selaginella moellendorffii HOM05D000726 ORTHO05D007554 3.2e-168 597.0 826 42.4
AagrBONN_evm.TU.Sc2ySwM_117.495 Anthoceros agrestis HOM05D000726 ORTHO05D007554 4.7e-159 566.6 734 43.6
HPP92_028352 Vanilla planifolia HOM05D000726 ORTHO05D007554 8.6e-153 545.8 637 46.9
CiPaw.01G005400 Carya illinoinensis HOM05D000726 ORTHO05D007554 2.8e-151 540.8 427 68.4
Oeu003558.1 Olea europaea HOM05D000726 ORTHO05D007554 1.9e-128 464.9 361 69.3
SEGI_38739 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 6.0e-122 443.4 643 41.7
CiPaw.01G005300 Carya illinoinensis HOM05D000726 ORTHO05D007554 9.6e-120 436.0 460 55.2
Sabra16G0084600 Salix brachista HOM05D000726 ORTHO05D007554 1.6e-106 392.1 351 63.0
Sabra11G0026400 Salix brachista HOM05D000726 ORTHO05D007554 1.3e-105 389.0 344 64.2
Sabra11G0056500 Salix brachista HOM05D000726 ORTHO05D007554 4.3e-104 384.0 340 63.8
HPP92_014040 Vanilla planifolia HOM05D000726 ORTHO05D007554 4.8e-103 380.6 663 36.7
Glyma.11G048432 Glycine max HOM05D000726 ORTHO05D007554 7.1e-99 366.7 236 78.0
PRCOL_00006071 Prasinoderma coloniale HOM05D000726 ORTHO05D007554 4.3e-80 304.3 455 36.5
Glyma.11G048366 Glycine max HOM05D000726 ORTHO05D007554 6.9e-78 297.0 397 45.3
Cpa.g.sc6.25 Carica papaya HOM05D000726 ORTHO05D007554 4.5e-77 294.3 384 45.6
Cre06.g262800 Chlamydomonas reinhardtii HOM05D000726 ORTHO05D007554 3.2e-67 261.5 453 35.1
CBR_g29418 Chara braunii HOM05D000019 ORTHO05D000002 9.7e-64 250.0 336 39.0
RcHm_v2.0_Chr2g0138441 Rosa chinensis HOM05D000726 ORTHO05D007554 7.0e-62 243.8 381 42.8
Nn1g04578 Nelumbo nucifera HOM05D000726 ORTHO05D007554 4.2e-59 234.6 305 43.6
SEGI_24863 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 2.6e-48 198.7 292 38.7
Glyma.08G243550 Glycine max HOM05D000726 ORTHO05D025659 1.1e-38 166.8 174 50.0
ATR0208G027 Amborella trichopoda HOM05D000726 ORTHO05D007554 1.3e-31 143.3 326 37.4
SEGI_23696 Sequoiadendron giganteum HOM05D000726 ORTHO05D000001 2.8e-26 125.6 444 27.7
Nn1g04577 Nelumbo nucifera HOM05D000726 ORTHO05D007554 4.7e-26 124.8 134 53.7
Lj7C94G0 Lonicera japonica HOM05D000726 ORTHO05D007554 2.3e-25 122.5 203 40.9
Psat0s3193g0080 Pisum sativum HOM05D000726 ORTHO05D025659 2.5e-19 102.4 117 42.7
Psat3g174680 Pisum sativum HOM05D000726 ORTHO05D025659 2.5e-19 102.4 117 44.4
Psat3g172760 Pisum sativum HOM05D000726 ORTHO05D025659 7.3e-19 100.9 118 42.4
Psat3g174600 Pisum sativum HOM05D000726 ORTHO05D025659 1.2e-18 100.1 114 43.0
Lsat_1_v5_gn_2_113660 Lactuca sativa HOM05D000726 ORTHO05D007554 1.3e-12 80.1 61 63.9
Zm00001eb060820 Zea mays HOM05D000726 ORTHO05D007554 1.8e-09 69.7 147 31.3


User provided reference genes

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