Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015475 Camellia sinensis var. sinensis HOM05D003891 ORTHO05D004802 1.4e-46 189.1 86 100.0
CSS0046534 Camellia sinensis var. sinensis HOM05D003891 ORTHO05D004802 1.4e-46 189.1 86 100.0
Lj5C171T9 Lonicera japonica HOM05D003891 ORTHO05D004802 1.2e-16 89.7 43 90.7
Rhsim05G0044600 Rhododendron simsii HOM05D003891 ORTHO05D004802 2.6e-16 88.6 45 86.7
CSS0031527 Camellia sinensis var. sinensis HOM05D003891 ORTHO05D004802 4.4e-16 87.8 41 92.7
Dinv14180 Davidia involucrata HOM05D003891 ORTHO05D004802 4.4e-16 87.8 42 90.5
Cc09_g10890 Coffea canephora HOM05D003891 ORTHO05D004802 7.5e-16 87.0 42 88.1
Dinv41863 Davidia involucrata HOM05D003891 ORTHO05D004802 9.8e-16 86.7 51 72.5
HanXRQChr16g0515191 Helianthus annuus HOM05D003891 ORTHO05D004802 1.3e-15 86.3 42 85.7
Actinidia26326 Actinidia chinensis HOM05D003891 ORTHO05D004802 2.2e-15 85.5 41 90.2
Atru.chr5.3571 Acer truncatum HOM05D003891 ORTHO05D004802 6.3e-15 84.0 44 81.8
Phvul.004G127600 Phaseolus vulgaris HOM05D003891 ORTHO05D004802 1.8e-14 82.4 41 82.9
Hund00096 Selenicereus undatus HOM05D003891 ORTHO05D004802 1.8e-14 82.4 44 79.5
VMungo0464G1760 Vigna mungo HOM05D003891 ORTHO05D004802 1.8e-14 82.4 41 82.9
Haze_01964 Corylus avellana HOM05D003891 ORTHO05D004802 2.4e-14 82.0 51 70.6
FvH4_2g16941 Fragaria vesca HOM05D003891 ORTHO05D004802 2.4e-14 82.0 42 83.3
Prupe.8G181200 Prunus persica HOM05D003891 ORTHO05D004802 2.4e-14 82.0 42 83.3
ECA233G4850 Erigeron canadensis HOM05D003891 ORTHO05D004802 3.1e-14 81.6 42 81.0
Hma1.2p1_0271F.1_g108710 Hydrangea macrophylla HOM05D003891 ORTHO05D004802 3.1e-14 81.6 42 81.0
RcHm_v2.0_Chr6g0281141 Rosa chinensis HOM05D003891 ORTHO05D004802 3.1e-14 81.6 42 81.0
Aqoxy6G01549 Aquilegia oxysepala HOM05D003891 ORTHO05D004802 4.1e-14 81.3 42 81.0
MD05G1141200 Malus domestica HOM05D003891 ORTHO05D004802 4.1e-14 81.3 42 83.3
MD10G1142600 Malus domestica HOM05D003891 ORTHO05D004802 4.1e-14 81.3 42 83.3
arahy.Tifrunner.gnm1.ann1.BD83WD Arachis hypogaea HOM05D003891 ORTHO05D004802 5.4e-14 80.9 52 71.2
arahy.Tifrunner.gnm1.ann1.HVI0X6 Arachis hypogaea HOM05D003891 ORTHO05D004802 5.4e-14 80.9 52 71.2
Nn6g31645 Nelumbo nucifera HOM05D003891 ORTHO05D004802 5.4e-14 80.9 42 78.6
Nitab4.5_0005657g0030 Nicotiana tabacum HOM05D003891 ORTHO05D004802 5.4e-14 80.9 42 81.0
QL11p056607 Quercus lobata HOM05D003891 ORTHO05D004802 5.4e-14 80.9 42 81.0
CsaV3_7G002080 Cucumis sativus L. HOM05D003891 ORTHO05D004802 7.0e-14 80.5 42 81.0
Migut.B00004 Erythranthe guttata HOM05D003891 ORTHO05D004802 7.0e-14 80.5 42 81.0
Peaxi162Scf00374g00733 Petunia axillaris HOM05D003891 ORTHO05D004802 7.0e-14 80.5 42 81.0
Sc08g0002090 Simmondsia chinensis HOM05D003891 ORTHO05D004802 7.0e-14 80.5 43 79.1
PGSC0003DMG400016830 Solanum tuberosum HOM05D003891 ORTHO05D004802 7.0e-14 80.5 42 81.0
GSVIVG01023862001 Vitis vinifera HOM05D003891 ORTHO05D004802 7.0e-14 80.5 41 82.9
CAN.G234.2 Capsicum annuum HOM05D003891 ORTHO05D004802 9.1e-14 80.1 42 81.0
Glyma.09G154000 Glycine max HOM05D003891 ORTHO05D004802 9.1e-14 80.1 41 80.5
Nitab4.5_0001700g0070 Nicotiana tabacum HOM05D003891 ORTHO05D004802 9.1e-14 80.1 42 78.6
CiPaw.06G114500 Carya illinoinensis HOM05D003891 ORTHO05D004802 1.2e-13 79.7 42 81.0
DCAR_028450 Daucus carota HOM05D003891 ORTHO05D004802 1.2e-13 79.7 42 81.0
Thecc.02G147300 Theobroma cacao HOM05D003891 ORTHO05D004802 1.2e-13 79.7 42 78.6
ClCG02G003290 Citrullus lanatus HOM05D003891 ORTHO05D004802 1.6e-13 79.3 42 78.6
MELO3C015700.2 Cucumis melo HOM05D003891 ORTHO05D004802 1.6e-13 79.3 42 78.6
Eucgr.H04996 Eucalyptus grandis HOM05D003891 ORTHO05D004802 1.6e-13 79.3 42 78.6
Peaxi162Scf00362g00144 Petunia axillaris HOM05D003891 ORTHO05D004802 1.6e-13 79.3 42 78.6
Psat3g195440 Pisum sativum HOM05D003891 ORTHO05D004802 1.6e-13 79.3 41 80.5
Potri.009G169000 Populus trichocarpa HOM05D003891 ORTHO05D004802 1.6e-13 79.3 41 80.5
PGSC0003DMG400014681 Solanum tuberosum HOM05D003891 ORTHO05D004802 1.6e-13 79.3 42 78.6
Sed0019069 Sechium edule HOM05D003891 ORTHO05D004802 2.0e-13 79.0 41 80.5
THA.LOC104807410 Tarenaya hassleriana HOM05D003891 ORTHO05D004802 2.0e-13 79.0 42 76.2
Carub.0007s0494 Capsella rubella HOM05D003891 ORTHO05D004802 2.7e-13 78.6 42 78.6
CiPaw.05G094100 Carya illinoinensis HOM05D003891 ORTHO05D004802 2.7e-13 78.6 42 81.0
Sp7g33150 Schrenkiella parvula HOM05D003891 ORTHO05D004802 2.7e-13 78.6 42 78.6
TPR.G10657 Trifolium pratense HOM05D003891 ORTHO05D004802 2.7e-13 78.6 41 80.5
MSTRG.19945 Avicennia marina HOM05D003891 ORTHO05D004802 3.5e-13 78.2 42 78.6
A01p03200 Brassica napus HOM05D003891 ORTHO05D004802 3.5e-13 78.2 42 78.6
C01p03550 Brassica napus HOM05D003891 ORTHO05D004802 3.5e-13 78.2 42 78.6
BolC1t00344H Brassica oleracea HOM05D003891 ORTHO05D004802 3.5e-13 78.2 42 78.6
BraA01t00305Z Brassica rapa HOM05D003891 ORTHO05D004802 3.5e-13 78.2 42 78.6
TWI75G0797 Tripterygium wilfordii HOM05D003891 ORTHO05D004802 3.5e-13 78.2 42 78.6
CANSAT25G0951 Cannabis sativa HOM05D003891 ORTHO05D004802 4.5e-13 77.8 42 78.6
Ca_25233_v3 Cicer arietinum L. HOM05D003891 ORTHO05D004802 4.5e-13 77.8 41 78.0
Ciclev10028695m.g Citrus clementina HOM05D003891 ORTHO05D004802 4.5e-13 77.8 42 76.2
Sed0009963 Sechium edule HOM05D003891 ORTHO05D004802 4.5e-13 77.8 41 78.0
SGA_v2.0_scaffold32G13353 Striga asiatica HOM05D003891 ORTHO05D004802 4.5e-13 77.8 42 76.2
TAR628G0887 Trochodendron aralioides HOM05D003891 ORTHO05D004802 4.5e-13 77.8 42 73.8
Duzib132G1166 Durio zibethinus HOM05D003891 ORTHO05D004802 5.9e-13 77.4 42 76.2
Gohir.A13G064300 Gossypium hirsutum HOM05D003891 ORTHO05D004802 5.9e-13 77.4 42 76.2
Gohir.D13G057500 Gossypium hirsutum HOM05D003891 ORTHO05D004802 5.9e-13 77.4 42 76.2
Sabra09G0131200 Salix brachista HOM05D000037 ORTHO05D004802 5.9e-13 77.4 41 78.0
Aa31LG2G14970 Aethionema arabicum HOM05D003891 ORTHO05D004802 7.7e-13 77.0 42 76.2
CAN.G1645.6 Capsicum annuum HOM05D003891 ORTHO05D004802 7.7e-13 77.0 41 75.6
Psat1g106000 Pisum sativum HOM05D003891 ORTHO05D004802 7.7e-13 77.0 41 78.0
PGR042G1041 Punica granatum HOM05D003891 ORTHO05D004802 7.7e-13 77.0 42 76.2
Ah.01g017670 Amaranthus hybridus HOM05D003891 ORTHO05D004802 1.0e-12 76.6 42 76.2
BcaNung00603 Brassica carinata HOM05D003891 ORTHO05D004802 1.0e-12 76.6 42 76.2
CARHR243690 Cardamine hirsuta HOM05D003891 ORTHO05D004802 1.0e-12 76.6 42 76.2
Thhalv10025517m.g Eutrema salsugineum HOM05D003891 ORTHO05D004802 1.0e-12 76.6 42 73.8
Lj2g0023729 Lotus japonicus HOM05D003891 ORTHO05D004802 1.3e-12 76.3 41 78.0
AL3G50210 Arabidopsis lyrata HOM05D003891 ORTHO05D004802 1.7e-12 75.9 40 80.0
EL10Ac9g21550 Beta vulgaris HOM05D003891 ORTHO05D004802 1.7e-12 75.9 42 73.8
Gorai.013G064800 Gossypium raimondii HOM05D003891 ORTHO05D004802 1.7e-12 75.9 42 73.8
AL7G15800 Arabidopsis lyrata HOM05D003891 ORTHO05D004802 2.3e-12 75.5 42 76.2
Carub.0003s3134 Capsella rubella HOM05D003891 ORTHO05D004802 2.3e-12 75.5 42 73.8
Lalb_Chr19g0131341 Lupinus albus HOM05D003891 ORTHO05D004802 2.3e-12 75.5 41 75.6
AT4G35360 Arabidopsis thaliana HOM05D003891 ORTHO05D004802 2.9e-12 75.1 42 76.2
CARHR107450 Cardamine hirsuta HOM05D003891 ORTHO05D004802 2.9e-12 75.1 41 75.6
Solyc10g074590.2 Solanum lycopersicum HOM05D003891 ORTHO05D004802 2.9e-12 75.1 42 76.2
Sopen10g027080 Solanum pennellii HOM05D003891 ORTHO05D004802 2.9e-12 75.1 42 76.2
AUR62013187 Chenopodium quinoa HOM05D003891 ORTHO05D004802 3.8e-12 74.7 42 71.4
Lalb_Chr03g0033131 Lupinus albus HOM05D003891 ORTHO05D004802 3.8e-12 74.7 41 75.6
SalBow1G5213 Salvia bowleyana HOM05D003891 ORTHO05D004802 5.0e-12 74.3 43 67.4
Carub.0003s3137 Capsella rubella HOM05D003891 ORTHO05D004802 6.6e-12 73.9 42 73.8
Cpa.g.sc232.5 Carica papaya HOM05D003891 ORTHO05D004802 6.6e-12 73.9 42 71.4
PSO210G7370 Papaver somniferum HOM05D003891 ORTHO05D004802 6.6e-12 73.9 42 71.4
PSO761G0136 Papaver somniferum HOM05D003891 ORTHO05D004802 6.6e-12 73.9 42 71.4
AL3G50220 Arabidopsis lyrata HOM05D003891 ORTHO05D004802 8.6e-12 73.6 42 73.8
HPP92_015472 Vanilla planifolia HOM05D003891 ORTHO05D004802 1.1e-11 73.2 42 73.8
ATR0605G040 Amborella trichopoda HOM05D003891 ORTHO05D004802 1.5e-11 72.8 42 69.0
AT2G17340 Arabidopsis thaliana HOM05D003891 ORTHO05D004802 1.5e-11 72.8 42 73.8
Manes.15G113400 Manihot esculenta HOM05D003891 ORTHO05D004802 1.5e-11 72.8 42 69.0
Os06g0325500 Oryza sativa ssp. japonica HOM05D003891 ORTHO05D004802 1.5e-11 72.8 42 73.8
Phvul.007G111800 Phaseolus vulgaris HOM05D003891 ORTHO05D004802 1.5e-11 72.8 41 68.3
Potri.004G207700 Populus trichocarpa HOM05D003891 ORTHO05D004802 1.5e-11 72.8 41 73.2
Sabra04G0139800 Salix brachista HOM05D003891 ORTHO05D004802 1.5e-11 72.8 41 70.7
Ca_09894_v3 Cicer arietinum L. HOM05D003891 ORTHO05D004802 1.9e-11 72.4 50 54.0
CDE10G0412 Ceratophyllum demersum HOM05D003891 ORTHO05D004802 2.5e-11 72.0 40 72.5
unitig_21.g20520 Utricularia gibba HOM05D003891 ORTHO05D004802 2.5e-11 72.0 41 73.2
Medtr6g060550 Medicago truncatula HOM05D003891 ORTHO05D004802 4.2e-11 71.2 41 73.2
AT2G17320 Arabidopsis thaliana HOM05D003891 ORTHO05D004802 7.2e-11 70.5 42 69.0
Glyma.20G212500 Glycine max HOM05D003891 ORTHO05D004802 7.2e-11 70.5 41 65.9
Lalb_Chr21g0311861 Lupinus albus HOM05D003891 ORTHO05D004802 7.2e-11 70.5 41 68.3
VMungo0720G0968 Vigna mungo HOM05D003891 ORTHO05D004802 1.6e-10 69.3 39 66.7
Oeu052171.1 Olea europaea HOM05D003891 ORTHO05D004802 2.1e-10 68.9 35 85.7
Aa31LG8G14670 Aethionema arabicum HOM05D003891 ORTHO05D004802 4.7e-10 67.8 42 66.7
arahy.Tifrunner.gnm1.ann1.94LQT9 Arachis hypogaea HOM05D003891 ORTHO05D004802 4.7e-10 67.8 49 55.1
arahy.Tifrunner.gnm1.ann1.QM8NH2 Arachis hypogaea HOM05D003891 ORTHO05D004802 4.7e-10 67.8 49 55.1
Lalb_Chr21g0311871 Lupinus albus HOM05D003891 ORTHO05D004802 6.1e-10 67.4 41 63.4
ATR0605G170 Amborella trichopoda HOM05D003891 ORTHO05D004802 8.0e-10 67.0 40 70.0
Carub.0003s3136 Capsella rubella HOM05D003891 ORTHO05D004802 8.0e-10 67.0 40 70.0
Lj5g0000118 Lotus japonicus HOM05D003891 ORTHO05D004802 8.0e-10 67.0 41 61.0
Psat6g112760 Pisum sativum HOM05D003891 ORTHO05D004802 8.0e-10 67.0 41 56.1
Medtr1g076720 Medicago truncatula HOM05D003891 ORTHO05D004802 1.0e-09 66.6 39 61.5
BcaB08g34723 Brassica carinata HOM05D003891 ORTHO05D004802 1.4e-09 66.2 42 64.3
Glyma.20G212400 Glycine max HOM05D003891 ORTHO05D004802 1.4e-09 66.2 41 58.5
BcaC01g02934 Brassica carinata HOM05D003891 ORTHO05D004802 1.8e-09 65.9 42 64.3
A06p34080 Brassica napus HOM05D003891 ORTHO05D004802 1.8e-09 65.9 42 64.3
C03p58170 Brassica napus HOM05D003891 ORTHO05D004802 1.8e-09 65.9 42 64.3
BolC3t18087H Brassica oleracea HOM05D003891 ORTHO05D004802 1.8e-09 65.9 42 64.3
BraA06t26341Z Brassica rapa HOM05D003891 ORTHO05D004802 1.8e-09 65.9 42 64.3
AUR62010186 Chenopodium quinoa HOM05D003891 ORTHO05D004802 4.0e-09 64.7 34 76.5
Ca_09895_v3 Cicer arietinum L. HOM05D003891 ORTHO05D004802 5.2e-09 64.3 41 56.1
TPR.G16614 Trifolium pratense HOM05D003891 ORTHO05D004802 1.5e-08 62.8 39 56.4
Sp3g30660 Schrenkiella parvula HOM05D003891 ORTHO05D004802 2.6e-08 62.0 42 61.9
Mapoly0021s0096 Marchantia polymorpha HOM05D003891 ORTHO05D004802 4.4e-08 61.2 40 65.0
Medtr1g076730 Medicago truncatula HOM05D003891 ORTHO05D004802 5.7e-08 60.8 40 60.0
SMO352G0076 Selaginella moellendorffii HOM05D003891 ORTHO05D004802 7.5e-08 60.5 42 57.1
Solyc01g112270.1 Solanum lycopersicum HOM05D003891 ORTHO05D004802 2.2e-07 58.9 32 75.0
Thhalv10022748m.g Eutrema salsugineum HOM05D003891 ORTHO05D004802 1.1e-06 56.6 43 60.5
Pp3c16_25870 Physcomitrium patens HOM05D003891 ORTHO05D004802 7.0e-06 53.9 42 52.4
vmacro10882 Vaccinium macrocarpon HOM05D003891 ORTHO05D004802 7.0e-06 53.9 28 78.6


User provided reference genes

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