Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015443 Camellia sinensis var. sinensis HOM05D008121 ORTHO05D009878 1.3e-91 339.7 173 100.0
Actinidia25609 Actinidia chinensis HOM05D008121 ORTHO05D009878 1.3e-27 127.1 144 55.6
CiPaw.12G036100 Carya illinoinensis HOM05D008121 ORTHO05D009878 4.0e-24 115.5 187 42.8
Hma1.2p1_0014F.1_g009910 Hydrangea macrophylla HOM05D008121 ORTHO05D009878 2.4e-21 106.3 171 45.0
DCAR_026211 Daucus carota HOM05D008121 ORTHO05D009878 4.5e-20 102.1 144 43.8
Solyc03g110980.4 Solanum lycopersicum HOM05D008121 ORTHO05D009878 1.3e-19 100.5 163 42.3
RcHm_v2.0_Chr7g0190901 Rosa chinensis HOM05D008121 ORTHO05D009878 2.2e-19 99.8 196 38.3
Sopen03g030170 Solanum pennellii HOM05D008121 ORTHO05D009878 3.8e-19 99.0 163 41.7
CiPaw.11G011700 Carya illinoinensis HOM05D008121 ORTHO05D009878 8.5e-19 97.8 182 40.1
Haze_07274 Corylus avellana HOM05D008121 ORTHO05D009878 8.5e-19 97.8 190 37.9
vmacro19236 Vaccinium macrocarpon HOM05D008121 ORTHO05D009878 8.5e-19 97.8 150 46.0
Prupe.5G156300 Prunus persica HOM05D008121 ORTHO05D009878 7.2e-18 94.7 195 36.4
Cpa.g.sc4.77 Carica papaya HOM05D008121 ORTHO05D009878 9.4e-18 94.4 150 42.0
Rhsim08G0185200 Rhododendron simsii HOM05D000290 ORTHO05D004630 2.7e-17 92.8 151 47.7
SGA_v2.0_scaffold161G37821 Striga asiatica HOM05D008121 ORTHO05D009878 2.7e-17 92.8 145 42.8
PGSC0003DMG400015199 Solanum tuberosum HOM05D008121 ORTHO05D009878 3.6e-17 92.4 163 40.5
Oeu018378.1 Olea europaea HOM05D008121 ORTHO05D009878 4.7e-17 92.0 124 51.6
Potri.015G091100 Populus trichocarpa HOM05D008121 ORTHO05D009878 6.1e-17 91.7 194 36.6
FvH4_5g07590 Fragaria vesca HOM05D008121 ORTHO05D009878 8.0e-17 91.3 195 36.9
Nitab4.5_0005327g0050 Nicotiana tabacum HOM05D008121 ORTHO05D009878 8.0e-17 91.3 162 40.1
QL10p005006 Quercus lobata HOM05D008121 ORTHO05D009878 8.8e-16 87.8 191 37.2
Thecc.03G123300 Theobroma cacao HOM05D008121 ORTHO05D009878 8.8e-16 87.8 176 38.1
Duzib205G1258 Durio zibethinus HOM05D008121 ORTHO05D009878 2.0e-15 86.7 173 39.9
MSTRG.22918 Avicennia marina HOM05D008121 ORTHO05D009878 2.6e-15 86.3 152 42.8
Cc04_g10260 Coffea canephora HOM05D008121 ORTHO05D009878 2.6e-15 86.3 171 36.8
Duzib084G1233 Durio zibethinus HOM05D008121 ORTHO05D009878 4.4e-15 85.5 142 42.3
Gohir.D09G246100 Gossypium hirsutum HOM05D008121 ORTHO05D009878 4.4e-15 85.5 138 40.6
Gorai.006G270600 Gossypium raimondii HOM05D008121 ORTHO05D009878 4.4e-15 85.5 138 40.6
FAN08G2628 Fragaria x ananassa HOM05D000290 ORTHO05D004630 9.8e-15 84.3 157 40.8
CAN.G352.52 Capsicum annuum HOM05D008121 ORTHO05D009878 1.3e-14 84.0 169 34.9
FAN04G1418 Fragaria x ananassa HOM05D000290 ORTHO05D004630 1.3e-14 84.0 193 36.3
Nitab4.5_0005418g0010 Nicotiana tabacum HOM05D008121 ORTHO05D009878 1.3e-14 84.0 156 39.7
Atru.chr9.1017 Acer truncatum HOM05D008121 ORTHO05D009878 1.7e-14 83.6 172 39.5
Migut.I00480 Erythranthe guttata HOM05D008121 ORTHO05D009878 1.7e-14 83.6 139 44.6
MD06G1149100 Malus domestica HOM05D008121 ORTHO05D009878 4.8e-14 82.0 196 35.7
Sabra15G0113100 Salix brachista HOM05D000290 ORTHO05D004630 6.3e-14 81.6 196 36.2
Cfa018889 Carpinus fangiana HOM05D008121 ORTHO05D009878 3.1e-13 79.3 194 35.1
Manes.14G055100 Manihot esculenta HOM05D008121 ORTHO05D009878 3.1e-13 79.3 189 34.4
TWI14G0571 Tripterygium wilfordii HOM05D008121 ORTHO05D009878 7.0e-13 78.2 192 33.3
Dinv38465 Davidia involucrata HOM05D008121 ORTHO05D009878 1.2e-12 77.4 132 43.9
GSVIVG01007536001 Vitis vinifera HOM05D008121 ORTHO05D009878 1.6e-12 77.0 168 36.9
Dinv02922 Davidia involucrata HOM05D008121 ORTHO05D009878 2.0e-12 76.6 132 44.7
Gohir.A09G245200 Gossypium hirsutum HOM05D008121 ORTHO05D009878 3.5e-12 75.9 137 39.4
Nn4g22451 Nelumbo nucifera HOM05D008121 ORTHO05D009878 5.0e-11 72.0 57 68.4
CANSAT80G0868 Cannabis sativa HOM05D008121 ORTHO05D009878 1.1e-10 70.9 193 34.2
ClCG03G003530 Citrullus lanatus HOM05D008121 ORTHO05D009878 3.2e-10 69.3 173 33.5
COL.COLO4_03517 Corchorus olitorius HOM05D008121 ORTHO05D009878 7.2e-10 68.2 169 36.1
Eucgr.K02754 Eucalyptus grandis HOM05D011481 ORTHO05D009878 9.4e-10 67.8 158 34.8
THA.LOC104821506 Tarenaya hassleriana HOM05D011481 ORTHO05D009878 1.2e-09 67.4 156 37.2
CsaV3_1G009340 Cucumis sativus L. HOM05D008121 ORTHO05D009878 2.7e-09 66.2 168 35.1
BcaC07g39334 Brassica carinata HOM05D011481 ORTHO05D009878 3.6e-09 65.9 140 36.4
C08p23500 Brassica napus HOM05D011481 ORTHO05D009878 3.6e-09 65.9 140 36.4
BolC8t49978H Brassica oleracea HOM05D011481 ORTHO05D009878 3.6e-09 65.9 140 36.4
MELO3C002337.2 Cucumis melo HOM05D008121 ORTHO05D009878 1.0e-08 64.3 182 31.9
EL10Ac7g18085 Beta vulgaris HOM05D008121 ORTHO05D009878 2.3e-08 63.2 146 37.0
A06p19190 Brassica napus HOM05D011481 ORTHO05D009878 2.3e-08 63.2 126 38.9
BraA06t25002Z Brassica rapa HOM05D011481 ORTHO05D009878 2.3e-08 63.2 126 38.9
Aa31LG4G17080 Aethionema arabicum HOM05D011481 ORTHO05D009878 3.0e-08 62.8 127 37.0
HanXRQChr09g0272891 Helianthus annuus HOM05D008121 ORTHO05D009878 3.0e-08 62.8 170 32.4
Ah.15g095290 Amaranthus hybridus HOM05D001185 ORTHO05D002551 6.8e-08 61.6 135 37.8
AUR62001288 Chenopodium quinoa HOM05D008121 ORTHO05D009878 1.2e-07 60.8 160 30.0
Carub.0005s1467 Capsella rubella HOM05D011481 ORTHO05D009878 1.5e-07 60.5 126 34.9
BcaB01g00807 Brassica carinata HOM05D011481 ORTHO05D009878 2.0e-07 60.1 135 34.1
Thhalv10011023m.g Eutrema salsugineum HOM05D011481 ORTHO05D009878 1.3e-06 57.4 47 61.7
Glyma.17G127300 Glycine max HOM05D008121 ORTHO05D009878 1.3e-06 57.4 176 29.5
Sed0025515 Sechium edule HOM05D008121 ORTHO05D009878 1.3e-06 57.4 178 33.1
PGR044G1447 Punica granatum HOM05D011481 ORTHO05D009878 1.7e-06 57.0 144 34.0
arahy.Tifrunner.gnm1.ann1.DV5N5R Arachis hypogaea HOM05D008121 ORTHO05D009878 2.2e-06 56.6 81 46.9
Ciclev10023121m.g Citrus clementina HOM05D008121 ORTHO05D009878 2.2e-06 56.6 54 59.3
Ciclev10024026m.g Citrus clementina HOM05D008121 ORTHO05D009878 2.2e-06 56.6 54 59.3
Lj4g0024363 Lotus japonicus HOM05D008121 ORTHO05D009878 2.2e-06 56.6 136 36.8
AL5G27920 Arabidopsis lyrata HOM05D011481 ORTHO05D009878 2.8e-06 56.2 130 33.8
arahy.Tifrunner.gnm1.ann1.YZZN9M Arachis hypogaea HOM05D008121 ORTHO05D009878 2.8e-06 56.2 90 47.8
VMungo1215G2720 Vigna mungo HOM05D000290 ORTHO05D004630 2.8e-06 56.2 173 32.9
FAN18G2983 Fragaria x ananassa HOM05D000290 ORTHO05D004630 6.3e-06 55.1 164 30.5
Phvul.003G208400 Phaseolus vulgaris HOM05D008121 ORTHO05D009878 6.3e-06 55.1 168 30.4
PSO339G0123 Papaver somniferum HOM05D008121 ORTHO05D009878 8.3e-06 54.7 71 54.9


User provided reference genes

Program Settings