Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015425 Camellia sinensis var. sinensis HOM05D000590 ORTHO05D006658 1.7e-63 245.7 113 100.0
CSS0049852 Camellia sinensis var. sinensis HOM05D000590 ORTHO05D006658 1.6e-50 202.6 113 85.0
CSS0042763 Camellia sinensis var. sinensis HOM05D000590 ORTHO05D006658 1.3e-44 183.0 113 78.8
CSS0032606 Camellia sinensis var. sinensis HOM05D000590 ORTHO05D006658 7.5e-40 167.2 113 75.2
CSS0028771 Camellia sinensis var. sinensis HOM05D000590 ORTHO05D006658 4.0e-33 144.8 113 67.3
CSS0047038 Camellia sinensis var. sinensis HOM05D000590 ORTHO05D006658 2.2e-15 85.9 120 50.0
Dinv13353 Davidia involucrata HOM05D000590 ORTHO05D006658 6.6e-12 74.3 52 67.3
Dinv26700 Davidia involucrata HOM05D000943 ORTHO05D006658 1.9e-11 72.8 52 69.2
Thecc.07G135100 Theobroma cacao HOM05D000590 ORTHO05D006658 4.3e-11 71.6 52 67.3
Ciclev10021099m.g Citrus clementina HOM05D000590 ORTHO05D006658 7.3e-11 70.9 51 66.7
Oeu005375.1 Olea europaea HOM05D000590 ORTHO05D006658 7.3e-11 70.9 52 63.5
Gohir.A04G045500 Gossypium hirsutum HOM05D000590 ORTHO05D006658 1.2e-10 70.1 49 67.3
Gohir.D05G337300 Gossypium hirsutum HOM05D000590 ORTHO05D006658 1.2e-10 70.1 49 67.3
Gorai.009G361500 Gossypium raimondii HOM05D000590 ORTHO05D006658 1.2e-10 70.1 49 67.3
Actinidia12609 Actinidia chinensis HOM05D000590 ORTHO05D006658 2.1e-10 69.3 52 65.4
QL08p025144 Quercus lobata HOM05D000590 ORTHO05D006658 2.1e-10 69.3 51 64.7
Haze_08447 Corylus avellana HOM05D000590 ORTHO05D006658 2.8e-10 68.9 52 63.5
THA.LOC104815580 Tarenaya hassleriana HOM05D000590 ORTHO05D006658 3.6e-10 68.6 52 59.6
Atru.chr2.1901 Acer truncatum HOM05D000590 ORTHO05D006658 4.7e-10 68.2 50 68.0
MSTRG.6694 Avicennia marina HOM05D000590 ORTHO05D006658 6.2e-10 67.8 52 61.5
BcaB06g25360 Brassica carinata HOM05D000590 ORTHO05D006658 6.2e-10 67.8 52 59.6
Manes.03G078000 Manihot esculenta HOM05D000590 ORTHO05D006658 6.2e-10 67.8 51 66.7
TAR627G0624 Trochodendron aralioides HOM05D000590 ORTHO05D006658 6.2e-10 67.8 52 65.4
COL.COLO4_17463 Corchorus olitorius HOM05D000590 ORTHO05D006658 8.1e-10 67.4 52 63.5
DCAR_019620 Daucus carota HOM05D000590 ORTHO05D006658 8.1e-10 67.4 51 60.8
Ah.06g187630 Amaranthus hybridus HOM05D000590 ORTHO05D006658 1.1e-09 67.0 51 62.7
Duzib213G0379 Durio zibethinus HOM05D000590 ORTHO05D006658 1.1e-09 67.0 51 64.7
Hund10399 Selenicereus undatus HOM05D000590 ORTHO05D006658 1.1e-09 67.0 50 64.0
Sc07g0002360 Simmondsia chinensis HOM05D000590 ORTHO05D006658 1.1e-09 67.0 46 63.0
GSVIVG01014083001 Vitis vinifera HOM05D000590 ORTHO05D006658 1.1e-09 67.0 51 62.7
Nn6g34385 Nelumbo nucifera HOM05D000590 ORTHO05D006658 1.4e-09 66.6 52 63.5
Aqoxy1G01876 Aquilegia oxysepala HOM05D000590 ORTHO05D006658 1.8e-09 66.2 50 62.0
CiPaw.11G155300 Carya illinoinensis HOM05D000590 ORTHO05D006658 1.8e-09 66.2 50 62.0
ClCG11G017110 Citrullus lanatus HOM05D000590 ORTHO05D006658 2.3e-09 65.9 50 62.0
CsaV3_4G032770 Cucumis sativus L. HOM05D000590 ORTHO05D006658 2.3e-09 65.9 50 62.0
TWI39G0773 Tripterygium wilfordii HOM05D000590 ORTHO05D006658 2.3e-09 65.9 49 63.3
vmacro11976 Vaccinium macrocarpon HOM05D000590 ORTHO05D006658 2.3e-09 65.9 46 69.6
Potri.001G382500 Populus trichocarpa HOM05D000590 ORTHO05D006658 3.1e-09 65.5 51 60.8
PGR031G2043 Punica granatum HOM05D000590 ORTHO05D006658 3.1e-09 65.5 50 64.0
THA.LOC104822584 Tarenaya hassleriana HOM05D000590 ORTHO05D006658 3.1e-09 65.5 51 58.8
TWI38G1174 Tripterygium wilfordii HOM05D000590 ORTHO05D006658 3.1e-09 65.5 50 66.0
MELO3C025676.2 Cucumis melo HOM05D000590 ORTHO05D006658 6.8e-09 64.3 50 60.0
Sopen07g030360 Solanum pennellii HOM05D000590 ORTHO05D006658 6.8e-09 64.3 48 64.6
PSO675G2935 Papaver somniferum HOM05D000590 ORTHO05D006658 8.9e-09 63.9 52 59.6
AL3G27050 Arabidopsis lyrata HOM05D000590 ORTHO05D006658 1.2e-08 63.5 52 55.8
EL10Ac4g08438 Beta vulgaris HOM05D000590 ORTHO05D006658 1.5e-08 63.2 51 58.8
Eucgr.F03226 Eucalyptus grandis HOM05D000590 ORTHO05D006658 1.5e-08 63.2 50 60.0
Sabra11G0077600 Salix brachista HOM05D000590 ORTHO05D006658 1.5e-08 63.2 51 58.8
Solyc07g062100.4 Solanum lycopersicum HOM05D000590 ORTHO05D006658 1.5e-08 63.2 45 66.7
PSO541G5312 Papaver somniferum HOM05D000590 ORTHO05D006658 2.0e-08 62.8 52 57.7
Sed0014657 Sechium edule HOM05D000590 ORTHO05D006658 2.0e-08 62.8 48 58.3
A05p34710 Brassica napus HOM05D000590 ORTHO05D006658 2.6e-08 62.4 47 57.4
Thhalv10021064m.g Eutrema salsugineum HOM05D000590 ORTHO05D006658 2.6e-08 62.4 52 57.7
HanXRQChr11g0330421 Helianthus annuus HOM05D000590 ORTHO05D006658 2.6e-08 62.4 48 64.6
AT3G14740 Arabidopsis thaliana HOM05D000590 ORTHO05D006658 3.4e-08 62.0 52 57.7
BcaC05g29040 Brassica carinata HOM05D000590 ORTHO05D006658 3.4e-08 62.0 47 57.4
C05p52510 Brassica napus HOM05D000590 ORTHO05D006658 3.4e-08 62.0 47 57.4
BolC5t33934H Brassica oleracea HOM05D000590 ORTHO05D006658 3.4e-08 62.0 47 57.4
BraA05t22287Z Brassica rapa HOM05D000590 ORTHO05D006658 3.4e-08 62.0 46 58.7
CAN.G375.56 Capsicum annuum HOM05D000590 ORTHO05D006658 3.4e-08 62.0 41 65.9
Migut.H02030 Erythranthe guttata HOM05D000590 ORTHO05D006658 3.4e-08 62.0 53 58.5
Sp3g12970 Schrenkiella parvula HOM05D000590 ORTHO05D006658 3.4e-08 62.0 51 56.9
Aa31LG8G1960 Aethionema arabicum HOM05D000590 ORTHO05D006658 4.4e-08 61.6 52 53.8
Aqoxy6G01959 Aquilegia oxysepala HOM05D000590 ORTHO05D006658 4.4e-08 61.6 50 58.0
CARHR089680 Cardamine hirsuta HOM05D000590 ORTHO05D006658 5.8e-08 61.2 52 55.8
PGSC0003DMG400007086 Solanum tuberosum HOM05D000590 ORTHO05D006658 5.8e-08 61.2 48 62.5
Carub.0003s1441 Capsella rubella HOM05D000590 ORTHO05D006658 7.5e-08 60.8 52 57.7
Potri.011G103100 Populus trichocarpa HOM05D000590 ORTHO05D006658 7.5e-08 60.8 51 58.8
Sabra11G0082500 Salix brachista HOM05D000590 ORTHO05D006658 7.5e-08 60.8 51 58.8
Zm00001eb122030 Zea mays HOM05D000590 ORTHO05D006658 7.5e-08 60.8 45 60.0
ECA236G0454 Erigeron canadensis HOM05D000590 ORTHO05D006658 9.9e-08 60.5 50 58.0
Lsat_1_v5_gn_7_100300 Lactuca sativa HOM05D000590 ORTHO05D006658 9.9e-08 60.5 48 62.5
A01p39070 Brassica napus HOM05D000590 ORTHO05D006658 1.7e-07 59.7 47 53.2
AUR62013940 Chenopodium quinoa HOM05D000590 ORTHO05D006658 1.7e-07 59.7 48 60.4
FvH4_3g17540 Fragaria vesca HOM05D000590 ORTHO05D006658 2.2e-07 59.3 47 57.4
FAN16G1913 Fragaria x ananassa HOM05D000590 ORTHO05D006658 2.2e-07 59.3 47 57.4
FAN21G3792 Fragaria x ananassa HOM05D000590 ORTHO05D006658 2.2e-07 59.3 47 57.4
FAN25G1530 Fragaria x ananassa HOM05D000590 ORTHO05D006658 2.2e-07 59.3 47 57.4
RcHm_v2.0_Chr5g0029281 Rosa chinensis HOM05D000590 ORTHO05D006658 2.2e-07 59.3 47 57.4
BcaC09g48444 Brassica carinata HOM05D000590 ORTHO05D006658 2.9e-07 58.9 49 51.0
C01p49700 Brassica napus HOM05D000590 ORTHO05D006658 2.9e-07 58.9 49 51.0
Cc05_g10610 Coffea canephora HOM05D000590 ORTHO05D006658 2.9e-07 58.9 52 51.9
FAN11G1469 Fragaria x ananassa HOM05D000590 ORTHO05D006658 2.9e-07 58.9 47 57.4
CANSAT56G2009 Cannabis sativa HOM05D000590 ORTHO05D006658 3.7e-07 58.5 47 55.3
MBI02_g37325_MAGBIO Magnolia biondii HOM05D000590 ORTHO05D006658 4.9e-07 58.2 50 54.0
MD03G1251300 Malus domestica HOM05D000590 ORTHO05D006658 4.9e-07 58.2 47 55.3
Glyma.15G210600 Glycine max HOM05D000590 ORTHO05D006658 6.4e-07 57.8 50 54.0
AUR62019672 Chenopodium quinoa HOM05D000590 ORTHO05D006658 8.3e-07 57.4 48 58.3
RcHm_v2.0_Chr5g0029161 Rosa chinensis HOM05D000590 ORTHO05D006658 8.3e-07 57.4 47 55.3
Prupe.4G155300 Prunus persica HOM05D000590 ORTHO05D006658 1.9e-06 56.2 47 53.2
arahy.Tifrunner.gnm1.ann1.14DVUV Arachis hypogaea HOM05D000590 ORTHO05D006658 2.4e-06 55.8 45 53.3
arahy.Tifrunner.gnm1.ann1.4S3ZRX Arachis hypogaea HOM05D000590 ORTHO05D006658 2.4e-06 55.8 45 53.3
Medtr8g042510 Medicago truncatula HOM05D000590 ORTHO05D006658 2.4e-06 55.8 45 55.6
TPR.G16489 Trifolium pratense HOM05D000590 ORTHO05D006658 2.4e-06 55.8 45 57.8
BolC1t04926H Brassica oleracea HOM05D000590 ORTHO05D006658 4.1e-06 55.1 49 51.0
SGA_v2.0_scaffold130G34256 Striga asiatica HOM05D000590 ORTHO05D006658 5.4e-06 54.7 48 54.2
VMungo1127G1365 Vigna mungo HOM05D000590 ORTHO05D006658 5.4e-06 54.7 50 50.0
Glyma.15G211600 Glycine max HOM05D000590 ORTHO05D006658 7.1e-06 54.3 50 54.0
Lalb_Chr01g0006941 Lupinus albus HOM05D000590 ORTHO05D006658 9.2e-06 53.9 50 48.0
Phvul.011G170000 Phaseolus vulgaris HOM05D000590 ORTHO05D006658 9.2e-06 53.9 50 48.0


User provided reference genes

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