Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015384 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D033891 5.5e-193 677.6 362 100.0
MBI07_g34628_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009236 2.5e-12 77.4 104 43.3
Nitab4.5_0000565g0010 Nicotiana tabacum HOM05D000001 ORTHO05D009236 2.3e-10 70.9 55 67.3
Nitab4.5_0008573g0040 Nicotiana tabacum HOM05D000001 ORTHO05D009236 3.0e-10 70.5 55 67.3
Potri.004G125500 Populus trichocarpa HOM05D000001 ORTHO05D009236 4.0e-10 70.1 53 67.9
Sabra04G0066400 Salix brachista HOM05D000001 ORTHO05D009236 5.2e-10 69.7 53 66.0
Dinv33799 Davidia involucrata HOM05D000001 ORTHO05D009236 6.8e-10 69.3 45 75.6
AUR62008956 Chenopodium quinoa HOM05D000001 ORTHO05D009236 7.5e-09 65.9 53 62.3
AUR62012951 Chenopodium quinoa HOM05D000383 ORTHO05D003501 7.5e-09 65.9 53 62.3
AUR62014547 Chenopodium quinoa HOM05D000001 ORTHO05D009236 7.5e-09 65.9 53 62.3
AUR62038675 Chenopodium quinoa HOM05D000001 ORTHO05D009236 7.5e-09 65.9 53 62.3
TWI32G1038 Tripterygium wilfordii HOM05D000001 ORTHO05D009236 1.3e-08 65.1 48 62.5
arahy.Tifrunner.gnm1.ann1.XXIG2Q Arachis hypogaea HOM05D000001 ORTHO05D009236 1.7e-08 64.7 57 50.9
CSS0016055 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D009236 1.7e-08 64.7 43 74.4
AUR62027893 Chenopodium quinoa HOM05D000001 ORTHO05D009236 1.7e-08 64.7 53 60.4
ECA238G4320 Erigeron canadensis HOM05D000001 ORTHO05D009236 2.2e-08 64.3 55 56.4
Ca_06899_v3 Cicer arietinum L. HOM05D002497 ORTHO05D009236 2.9e-08 63.9 96 36.5
Nn4g23315 Nelumbo nucifera HOM05D000001 ORTHO05D009236 6.4e-08 62.8 44 70.5
SEGI_07546 Sequoiadendron giganteum HOM05D000001 ORTHO05D038290 8.3e-08 62.4 107 46.7
Ah.10g037460 Amaranthus hybridus HOM05D000001 ORTHO05D009236 1.1e-07 62.0 53 54.7
Glyma.08G241100 Glycine max HOM05D000001 ORTHO05D009236 1.1e-07 62.0 49 61.2
HanXRQChr02g0057601 Helianthus annuus HOM05D000001 ORTHO05D009857 1.1e-07 62.0 98 33.7
EL10Ac2g04619 Beta vulgaris HOM05D000001 ORTHO05D009236 1.4e-07 61.6 51 58.8
Lju41C8T17 Lonicera japonica HOM05D000001 ORTHO05D009236 1.4e-07 61.6 44 70.5
Peaxi162Scf00154g00005 Petunia axillaris HOM05D000001 ORTHO05D009373 1.4e-07 61.6 108 43.5
TAR383G0736 Trochodendron aralioides HOM05D000001 ORTHO05D000003 1.4e-07 61.6 92 38.0
Dinv27937 Davidia involucrata HOM05D000001 ORTHO05D000003 1.9e-07 61.2 110 50.9
SHI08096 Sapria himalayana HOM05D000001 ORTHO05D009054 1.9e-07 61.2 94 33.0
Haze_19878 Corylus avellana HOM05D000001 ORTHO05D000003 2.4e-07 60.8 109 33.0
Haze_19886 Corylus avellana HOM05D000001 ORTHO05D000003 2.4e-07 60.8 109 33.0
Lsat_1_v5_gn_2_88141 Lactuca sativa HOM05D000001 ORTHO05D009236 2.4e-07 60.8 55 56.4
MBI04_g46760_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 2.4e-07 60.8 102 31.4
Nn8g39433 Nelumbo nucifera HOM05D000001 ORTHO05D000003 2.4e-07 60.8 92 38.0
Nitab4.5_0005666g0010 Nicotiana tabacum HOM05D000001 ORTHO05D010146 2.4e-07 60.8 103 40.8
Glyma.18G263500 Glycine max HOM05D000001 ORTHO05D009236 3.2e-07 60.5 49 59.2
CAN.G206.190 Capsicum annuum HOM05D000001 ORTHO05D009236 4.1e-07 60.1 56 55.4
Dinv01269 Davidia involucrata HOM05D000001 ORTHO05D000003 4.1e-07 60.1 109 33.0
HanXRQChr07g0199521 Helianthus annuus HOM05D000001 ORTHO05D009236 4.1e-07 60.1 55 56.4
Lsat_1_v5_gn_1_44961 Lactuca sativa HOM05D000001 ORTHO05D000003 4.1e-07 60.1 100 33.0
MBI04_g42208_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 4.1e-07 60.1 102 31.4
Sc03g0005730 Simmondsia chinensis HOM05D000001 ORTHO05D011014 4.1e-07 60.1 92 46.7
unitig_62.g23524 Utricularia gibba HOM05D000001 ORTHO05D010004 4.1e-07 60.1 94 34.0
CiPaw.09G036700 Carya illinoinensis HOM05D000001 ORTHO05D000003 5.4e-07 59.7 100 32.0
Cfa016837 Carpinus fangiana HOM05D000001 ORTHO05D000003 7.0e-07 59.3 109 33.0
Ciclev10018334m.g Citrus clementina HOM05D000001 ORTHO05D000003 7.0e-07 59.3 119 31.9
DCAR_011068 Daucus carota HOM05D000001 ORTHO05D009236 7.0e-07 59.3 45 66.7
Nitab4.5_0002499g0090 Nicotiana tabacum HOM05D000001 ORTHO05D011014 7.0e-07 59.3 97 34.0
Thecc.06G188000 Theobroma cacao HOM05D000001 ORTHO05D010094 7.0e-07 59.3 100 33.0
COL.COLO4_14038 Corchorus olitorius HOM05D000001 ORTHO05D012157 9.2e-07 58.9 95 37.9
Haze_06191 Corylus avellana HOM05D000001 ORTHO05D000003 9.2e-07 58.9 118 30.5
Lalb_Chr14g0363431 Lupinus albus HOM05D000001 ORTHO05D000003 9.2e-07 58.9 104 30.8
QL05p040267 Quercus lobata HOM05D000001 ORTHO05D010094 9.2e-07 58.9 100 34.0
SMO115G0285 Selaginella moellendorffii HOM05D000001 ORTHO05D374992 9.2e-07 58.9 103 45.6
Thecc.05G206300 Theobroma cacao HOM05D000001 ORTHO05D000003 9.2e-07 58.9 90 36.7
TWI32G0293 Tripterygium wilfordii HOM05D000001 ORTHO05D000003 9.2e-07 58.9 101 33.7
CANSAT01G0095 Cannabis sativa HOM05D000001 ORTHO05D009236 1.2e-06 58.5 45 62.2
Cfa000639 Carpinus fangiana HOM05D000001 ORTHO05D000003 1.2e-06 58.5 118 29.7
Rhsim04G0098000 Rhododendron simsii HOM05D000001 ORTHO05D009236 1.2e-06 58.5 45 62.2
TAR636G0918 Trochodendron aralioides HOM05D004402 ORTHO05D005314 1.2e-06 58.5 106 43.4
VMungo0251G1883 Vigna mungo HOM05D000001 ORTHO05D009857 1.2e-06 58.5 273 23.1
Atru.chr7.806 Acer truncatum HOM05D000001 ORTHO05D000003 1.6e-06 58.2 97 34.0
Nitab4.5_0000464g0090 Nicotiana tabacum HOM05D000001 ORTHO05D009054 1.6e-06 58.2 101 46.5
Prupe.6G328300 Prunus persica HOM05D000001 ORTHO05D000003 1.6e-06 58.2 288 25.3
Sed0003071 Sechium edule HOM05D000001 ORTHO05D000003 1.6e-06 58.2 269 24.5
PGSC0003DMG400002848 Solanum tuberosum HOM05D000001 ORTHO05D000003 1.6e-06 58.2 109 25.7
AUR62011759 Chenopodium quinoa HOM05D000001 ORTHO05D000003 2.0e-06 57.8 109 45.9
Migut.H00666 Erythranthe guttata HOM05D000001 ORTHO05D009236 2.0e-06 57.8 55 50.9
Hma1.2p1_2073F.1_g313210 Hydrangea macrophylla HOM05D000001 ORTHO05D009236 2.0e-06 57.8 43 65.1
MBI14_g00512_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D033891 2.0e-06 57.8 107 45.8
Medtr7g011840 Medicago truncatula HOM05D000001 ORTHO05D009236 2.0e-06 57.8 55 50.9
Sc05g0006480 Simmondsia chinensis HOM05D000001 ORTHO05D009595 2.0e-06 57.8 95 33.7
SGA_v2.0_scaffold232G43479 Striga asiatica HOM05D000001 ORTHO05D000003 2.0e-06 57.8 94 34.0
Actinidia13244 Actinidia chinensis HOM05D000001 ORTHO05D000003 2.7e-06 57.4 102 30.4
CAN.G1330.22 Capsicum annuum HOM05D000001 ORTHO05D009054 2.7e-06 57.4 101 45.5
Thhalv10010025m.g Eutrema salsugineum HOM05D000001 ORTHO05D000003 2.7e-06 57.4 105 27.6
Manes.11G038200 Manihot esculenta HOM05D000001 ORTHO05D009054 2.7e-06 57.4 109 29.4
QL05p083929 Quercus lobata HOM05D000001 ORTHO05D009236 2.7e-06 57.4 47 57.4
RcHm_v2.0_Chr7g0228961 Rosa chinensis HOM05D000001 ORTHO05D009054 2.7e-06 57.4 124 39.5
TAR628G1458 Trochodendron aralioides HOM05D000001 ORTHO05D000003 2.7e-06 57.4 133 38.3
AUR62036256 Chenopodium quinoa HOM05D000001 ORTHO05D010365 3.5e-06 57.0 101 30.7
MELO3C018251.2 Cucumis melo HOM05D000001 ORTHO05D010340 3.5e-06 57.0 94 48.9
Thhalv10027143m.g Eutrema salsugineum HOM05D000001 ORTHO05D000003 3.5e-06 57.0 99 34.3
MBI03_g24324_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009229 3.5e-06 57.0 107 46.7
MBI15_g34445_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D048584 3.5e-06 57.0 92 51.1
Manes.17G045300 Manihot esculenta HOM05D000001 ORTHO05D010094 3.5e-06 57.0 100 34.0
Nn2g13801 Nelumbo nucifera HOM05D000001 ORTHO05D000003 3.5e-06 57.0 109 43.1
Peaxi162Scf00166g00946 Petunia axillaris HOM05D000001 ORTHO05D009236 3.5e-06 57.0 55 54.5
Peaxi162Scf00385g00066 Petunia axillaris HOM05D000001 ORTHO05D009054 3.5e-06 57.0 101 45.5
Peaxi162Scf00984g00022 Petunia axillaris HOM05D000001 ORTHO05D000003 3.5e-06 57.0 100 32.0
Phvul.011G004900 Phaseolus vulgaris HOM05D000001 ORTHO05D009335 3.5e-06 57.0 287 22.3
Sopen04g001480 Solanum pennellii HOM05D000001 ORTHO05D000003 3.5e-06 57.0 109 25.7
TAR362G0594 Trochodendron aralioides HOM05D000001 ORTHO05D004269 3.5e-06 57.0 108 43.5
GSVIVG01011479001 Vitis vinifera HOM05D000001 ORTHO05D009236 3.5e-06 57.0 41 65.9
GSVIVG01035837001 Vitis vinifera HOM05D000001 ORTHO05D000003 3.5e-06 57.0 101 35.6
AagrBONN_evm.TU.Sc2ySwM_340.2091 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.6e-06 56.6 95 49.5
AagrBONN_evm.TU.Sc2ySwM_344.3724 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.6e-06 56.6 95 50.5
BcaNung03847 Brassica carinata HOM05D000001 ORTHO05D000003 4.6e-06 56.6 83 38.6
DCAR_008177 Daucus carota HOM05D000001 ORTHO05D010094 4.6e-06 56.6 80 35.0
Duzib151G0637 Durio zibethinus HOM05D000001 ORTHO05D009507 4.6e-06 56.6 89 47.2
FvH4_6g47760 Fragaria vesca HOM05D000001 ORTHO05D009236 4.6e-06 56.6 52 55.8
Hma1.2p1_0007F.1_g005010 Hydrangea macrophylla HOM05D000001 ORTHO05D000003 4.6e-06 56.6 101 34.7
MBI13_g43842_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 4.6e-06 56.6 102 30.4
Phvul.006G221900 Phaseolus vulgaris HOM05D000001 ORTHO05D010340 4.6e-06 56.6 112 34.8
Atru.chr7.2398 Acer truncatum HOM05D000001 ORTHO05D000003 6.0e-06 56.2 95 34.7
AagrBONN_evm.TU.Sc2ySwM_362.2 Anthoceros agrestis HOM05D000001 ORTHO05D000003 6.0e-06 56.2 95 50.5
arahy.Tifrunner.gnm1.ann1.ZMZE8G Arachis hypogaea HOM05D000001 ORTHO05D000003 6.0e-06 56.2 139 26.6
EL10Ac9g20723 Beta vulgaris HOM05D000001 ORTHO05D009438 6.0e-06 56.2 101 30.7
Carub.0001s3229 Capsella rubella HOM05D000001 ORTHO05D000003 6.0e-06 56.2 105 27.6
Cfa000457 Carpinus fangiana HOM05D000001 ORTHO05D010094 6.0e-06 56.2 100 32.0
Cfa022923 Carpinus fangiana HOM05D000001 ORTHO05D000003 6.0e-06 56.2 83 38.6
Cc08_g00860 Coffea canephora HOM05D000001 ORTHO05D000003 6.0e-06 56.2 109 30.3
COL.COLO4_12247 Corchorus olitorius HOM05D000001 ORTHO05D009236 6.0e-06 56.2 48 56.2
Eucgr.F01621 Eucalyptus grandis HOM05D000001 ORTHO05D009054 6.0e-06 56.2 94 29.8
FAN05G4906 Fragaria x ananassa HOM05D000001 ORTHO05D009236 6.0e-06 56.2 52 55.8
FAN14G3514 Fragaria x ananassa HOM05D000001 ORTHO05D009236 6.0e-06 56.2 52 55.8
HanXRQChr11g0353661 Helianthus annuus HOM05D000001 ORTHO05D000003 6.0e-06 56.2 100 31.0
PSO063G7612 Papaver somniferum HOM05D000001 ORTHO05D009236 6.0e-06 56.2 45 55.6
RcHm_v2.0_Chr2g0166911 Rosa chinensis HOM05D000001 ORTHO05D009236 6.0e-06 56.2 52 55.8
Sc16g0006110 Simmondsia chinensis HOM05D000001 ORTHO05D009857 6.0e-06 56.2 105 31.4
Solyc04g082870.1 Solanum lycopersicum HOM05D000001 ORTHO05D009054 6.0e-06 56.2 120 41.7
TAR636G3465 Trochodendron aralioides HOM05D000001 ORTHO05D000003 6.0e-06 56.2 289 23.2
Actinidia08241 Actinidia chinensis HOM05D000001 ORTHO05D009502 7.8e-06 55.8 91 30.8
Actinidia22483 Actinidia chinensis HOM05D000001 ORTHO05D009502 7.8e-06 55.8 91 30.8
Cfa007614 Carpinus fangiana HOM05D000001 ORTHO05D009236 7.8e-06 55.8 44 59.1
Cfa008394 Carpinus fangiana HOM05D000001 ORTHO05D000003 7.8e-06 55.8 100 31.0
CDE04G1273 Ceratophyllum demersum HOM05D000001 ORTHO05D034272 7.8e-06 55.8 108 29.6
FAN18G4108 Fragaria x ananassa HOM05D000001 ORTHO05D000003 7.8e-06 55.8 127 26.8
FAN18G4583 Fragaria x ananassa HOM05D000001 ORTHO05D000003 7.8e-06 55.8 127 26.8
Prupe.4G047100 Prunus persica HOM05D000001 ORTHO05D010094 7.8e-06 55.8 100 32.0
PGR042G1926 Punica granatum HOM05D000001 ORTHO05D010094 7.8e-06 55.8 100 32.0
PGSC0003DMG400010006 Solanum tuberosum HOM05D000001 ORTHO05D009054 7.8e-06 55.8 120 41.7
Thecc.05G158500 Theobroma cacao HOM05D000001 ORTHO05D000003 7.8e-06 55.8 109 27.5
VMungo1383G3679 Vigna mungo HOM05D000001 ORTHO05D000003 7.8e-06 55.8 107 29.9


User provided reference genes

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