Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015345 Camellia sinensis var. sinensis HOM05D002012 ORTHO05D001992 5.3e-51 204.1 108 100.0
CSS0019146 Camellia sinensis var. sinensis HOM05D002012 ORTHO05D001992 2.8e-36 155.2 96 88.5
Dinv42379 Davidia involucrata HOM05D002012 ORTHO05D001992 1.1e-29 133.3 96 75.0
Actinidia30209 Actinidia chinensis HOM05D002012 ORTHO05D001992 2.5e-29 132.1 96 76.0
Dinv25565 Davidia involucrata HOM05D002012 ORTHO05D001992 4.3e-29 131.3 103 71.8
vmacro17189 Vaccinium macrocarpon HOM05D002012 ORTHO05D001992 1.3e-28 129.8 99 72.7
Duzib168G1258 Durio zibethinus HOM05D002012 ORTHO05D001992 1.7e-28 129.4 96 71.9
RhsimUnG0192400 Rhododendron simsii HOM05D002012 ORTHO05D001992 2.2e-28 129.0 106 69.8
Thecc.09G078800 Theobroma cacao HOM05D002012 ORTHO05D001992 3.7e-28 128.3 96 74.0
TWI34G1750 Tripterygium wilfordii HOM05D002012 ORTHO05D001992 8.2e-28 127.1 96 72.9
TAR624G1209 Trochodendron aralioides HOM05D002012 ORTHO05D001992 1.1e-27 126.7 96 75.0
Haze_25988 Corylus avellana HOM05D002012 ORTHO05D001992 3.1e-27 125.2 94 75.5
ATR0598G305 Amborella trichopoda HOM05D002012 ORTHO05D001992 4.1e-27 124.8 96 71.9
Actinidia35647 Actinidia chinensis HOM05D002012 ORTHO05D001992 1.2e-26 123.2 122 62.3
Cfa003016 Carpinus fangiana HOM05D002012 ORTHO05D001992 1.5e-26 122.9 94 74.5
MELO3C004651.2 Cucumis melo HOM05D002012 ORTHO05D001992 1.5e-26 122.9 104 63.5
CsaV3_2G001170 Cucumis sativus L. HOM05D002012 ORTHO05D001992 1.5e-26 122.9 104 63.5
ClCG11G001450 Citrullus lanatus HOM05D002012 ORTHO05D001992 2.6e-26 122.1 104 63.5
Solyc07g041660.4 Solanum lycopersicum HOM05D002012 ORTHO05D001992 2.6e-26 122.1 96 70.8
MBI19_g11833_MAGBIO Magnolia biondii HOM05D002012 ORTHO05D001992 3.4e-26 121.7 96 68.8
Manes.16G096300 Manihot esculenta HOM05D002012 ORTHO05D001992 4.5e-26 121.3 97 71.1
Duzib187G1411 Durio zibethinus HOM05D002012 ORTHO05D001992 5.9e-26 120.9 84 76.2
QL11p000520 Quercus lobata HOM05D002012 ORTHO05D001992 5.9e-26 120.9 103 68.0
RhsimUnG0010400 Rhododendron simsii HOM05D000879 ORTHO05D001992 7.7e-26 120.6 106 67.0
SalBow6G4123 Salvia bowleyana HOM05D002012 ORTHO05D001992 7.7e-26 120.6 96 69.8
Sopen07g021140 Solanum pennellii HOM05D002012 ORTHO05D001992 7.7e-26 120.6 96 69.8
Actinidia35644 Actinidia chinensis HOM05D002012 ORTHO05D001992 1.3e-25 119.8 96 71.9
Gohir.A05G033400 Gossypium hirsutum HOM05D002012 ORTHO05D001992 1.3e-25 119.8 96 65.6
TWI63G1275 Tripterygium wilfordii HOM05D002012 ORTHO05D001992 1.3e-25 119.8 96 68.8
Actinidia35648 Actinidia chinensis HOM05D002012 ORTHO05D001992 1.7e-25 119.4 94 70.2
COL.COLO4_18109 Corchorus olitorius HOM05D002012 ORTHO05D001992 1.7e-25 119.4 96 70.8
TAR636G1422 Trochodendron aralioides HOM05D002012 ORTHO05D001992 1.7e-25 119.4 96 70.8
Gorai.009G035300 Gossypium raimondii HOM05D002012 ORTHO05D001992 2.2e-25 119.0 96 65.6
Nitab4.5_0000343g0100 Nicotiana tabacum HOM05D002012 ORTHO05D001992 2.9e-25 118.6 96 68.8
Ciclev10007498m.g Citrus clementina HOM05D002012 ORTHO05D001992 5.0e-25 117.9 104 64.4
CiPaw.03G207500 Carya illinoinensis HOM05D002012 ORTHO05D001992 8.5e-25 117.1 103 65.0
Nn8g38672 Nelumbo nucifera HOM05D002012 ORTHO05D001992 1.4e-24 116.3 96 70.8
Nitab4.5_0008382g0010 Nicotiana tabacum HOM05D002012 ORTHO05D001992 1.4e-24 116.3 96 67.7
Oeu063415.1 Olea europaea HOM05D002012 ORTHO05D001992 1.4e-24 116.3 103 64.1
CAN.G258.8 Capsicum annuum HOM05D002012 ORTHO05D001992 1.9e-24 115.9 96 67.7
Gohir.D05G034900 Gossypium hirsutum HOM05D002012 ORTHO05D001992 1.9e-24 115.9 96 64.6
Lj7C686G2 Lonicera japonica HOM05D002012 ORTHO05D001992 3.2e-24 115.2 96 69.8
Oeu020557.1 Olea europaea HOM05D002012 ORTHO05D001992 3.2e-24 115.2 96 65.6
Sc08g0008860 Simmondsia chinensis HOM05D002012 ORTHO05D001992 3.2e-24 115.2 96 68.8
SGA_v2.0_scaffold91G28092 Striga asiatica HOM05D002012 ORTHO05D001992 5.5e-24 114.4 103 62.1
Cc06_g12050 Coffea canephora HOM05D002012 ORTHO05D001992 7.2e-24 114.0 96 69.8
Sabra06G0112000 Salix brachista HOM05D002012 ORTHO05D001992 7.2e-24 114.0 92 69.6
HPP92_007983 Vanilla planifolia HOM05D002012 ORTHO05D001992 7.2e-24 114.0 103 58.3
Migut.J00935 Erythranthe guttata HOM05D002012 ORTHO05D001992 1.6e-23 112.8 96 63.5
Potri.006G143000 Populus trichocarpa HOM05D002012 ORTHO05D001992 1.6e-23 112.8 91 71.4
Sc08g0009350 Simmondsia chinensis HOM05D002012 ORTHO05D001992 1.6e-23 112.8 96 67.7
MSTRG.19467 Avicennia marina HOM05D002012 ORTHO05D001992 2.7e-23 112.1 96 65.6
CiPaw.04G144400 Carya illinoinensis HOM05D002012 ORTHO05D001992 3.6e-23 111.7 96 65.6
MD00G1142500 Malus domestica HOM05D002012 ORTHO05D001992 7.9e-23 110.5 96 62.5
MD02G1089000 Malus domestica HOM05D002012 ORTHO05D001992 7.9e-23 110.5 96 62.5
CANSAT56G2451 Cannabis sativa HOM05D002012 ORTHO05D001992 1.4e-22 109.8 103 61.2
FAN23G2131 Fragaria x ananassa HOM05D002012 ORTHO05D001992 1.4e-22 109.8 104 60.6
PGR142G4458 Punica granatum HOM05D002012 ORTHO05D001992 1.4e-22 109.8 96 68.8
EL10Ac8g19105 Beta vulgaris HOM05D002012 ORTHO05D001992 3.9e-22 108.2 95 63.2
DCAR_011951 Daucus carota HOM05D002012 ORTHO05D001992 3.9e-22 108.2 92 69.6
FAN26G0159 Fragaria x ananassa HOM05D002012 ORTHO05D001992 5.1e-22 107.8 104 62.5
FAN26G1695 Fragaria x ananassa HOM05D002012 ORTHO05D001992 5.1e-22 107.8 104 62.5
Eucgr.C00822 Eucalyptus grandis HOM05D002012 ORTHO05D001992 6.7e-22 107.5 96 67.7
Phvul.009G227900 Phaseolus vulgaris HOM05D002012 ORTHO05D001992 6.7e-22 107.5 104 57.7
FAN19G0643 Fragaria x ananassa HOM05D002012 ORTHO05D001992 8.8e-22 107.1 104 62.5
MSTRG.26464 Avicennia marina HOM05D002012 ORTHO05D001992 1.5e-21 106.3 95 62.1
FvH4_1g08450 Fragaria vesca HOM05D002012 ORTHO05D001992 2.0e-21 105.9 104 61.5
FAN28G1411 Fragaria x ananassa HOM05D002012 ORTHO05D001992 4.4e-21 104.8 104 61.5
MD15G1216100 Malus domestica HOM05D002012 ORTHO05D001992 5.7e-21 104.4 98 61.2
RcHm_v2.0_Chr2g0094551 Rosa chinensis HOM05D002012 ORTHO05D001992 5.7e-21 104.4 104 60.6
Sp7g06790 Schrenkiella parvula HOM05D002012 ORTHO05D001992 1.7e-20 102.8 106 52.8
Sed0011181 Sechium edule HOM05D002012 ORTHO05D001992 2.8e-20 102.1 105 54.3
THA.LOC104808888 Tarenaya hassleriana HOM05D002012 ORTHO05D001992 2.8e-20 102.1 103 56.3
Aa31LG9G5250 Aethionema arabicum HOM05D002012 ORTHO05D001992 3.7e-20 101.7 103 54.4
PSO135G0920 Papaver somniferum HOM05D002012 ORTHO05D001992 3.7e-20 101.7 97 63.9
GSVIVG01015094001 Vitis vinifera HOM05D002012 ORTHO05D001992 4.8e-20 101.3 97 63.9
CDE07G0836 Ceratophyllum demersum HOM05D002012 ORTHO05D001992 6.3e-20 100.9 96 57.3
Rhsim04G0079000 Rhododendron simsii HOM05D000879 ORTHO05D002043 6.3e-20 100.9 76 67.1
VMungo1309G2233 Vigna mungo HOM05D002012 ORTHO05D001992 6.3e-20 100.9 104 54.8
Glyma.15G176600 Glycine max HOM05D002012 ORTHO05D001992 1.1e-19 100.1 104 54.8
HanXRQChr12g0354321 Helianthus annuus HOM05D002012 ORTHO05D001992 1.1e-19 100.1 103 59.2
Lalb_Chr11g0074281 Lupinus albus HOM05D002012 ORTHO05D001992 1.4e-19 99.8 104 54.8
Rhsim04G0079500 Rhododendron simsii HOM05D002012 ORTHO05D001992 1.4e-19 99.8 56 85.7
BcaC02g09479 Brassica carinata HOM05D002012 ORTHO05D001992 1.8e-19 99.4 96 56.2
C04p43250 Brassica napus HOM05D002012 ORTHO05D001992 1.8e-19 99.4 96 56.2
BolC4t25905H Brassica oleracea HOM05D002012 ORTHO05D001992 1.8e-19 99.4 96 56.2
CDE06G1025 Ceratophyllum demersum HOM05D002012 ORTHO05D001992 1.8e-19 99.4 96 58.3
A04p09750 Brassica napus HOM05D002012 ORTHO05D001992 3.1e-19 98.6 96 56.2
BraA04t16637Z Brassica rapa HOM05D002012 ORTHO05D001992 3.1e-19 98.6 96 56.2
ECA234G2093 Erigeron canadensis HOM05D002012 ORTHO05D001992 5.3e-19 97.8 96 60.4
Medtr2g041470 Medicago truncatula HOM05D002012 ORTHO05D001992 5.3e-19 97.8 85 56.5
PSO724G0857 Papaver somniferum HOM05D002012 ORTHO05D001992 5.3e-19 97.8 97 61.9
unitig_21.g20983 Utricularia gibba HOM05D002012 ORTHO05D001992 6.9e-19 97.4 91 60.4
Ca_26331_v3 Cicer arietinum L. HOM05D002012 ORTHO05D001992 9.1e-19 97.1 85 56.5
CARHR217620 Cardamine hirsuta HOM05D002012 ORTHO05D001992 1.2e-18 96.7 103 52.4
Thhalv10003439m.g Eutrema salsugineum HOM05D002012 ORTHO05D001992 1.2e-18 96.7 87 57.5
Os02g0777100 Oryza sativa ssp. japonica HOM05D002012 ORTHO05D001992 1.5e-18 96.3 96 57.3
Glyma.09G068800 Glycine max HOM05D002012 ORTHO05D001992 2.0e-18 95.9 104 52.9
Lsat_1_v5_gn_8_86401 Lactuca sativa HOM05D002012 ORTHO05D001992 2.0e-18 95.9 106 57.5
AL7G44380 Arabidopsis lyrata HOM05D002012 ORTHO05D001992 2.6e-18 95.5 103 51.5
BcaB06g26946 Brassica carinata HOM05D002012 ORTHO05D001992 2.6e-18 95.5 96 54.2
Rhsim05G0033300 Rhododendron simsii HOM05D000879 ORTHO05D001992 2.6e-18 95.5 74 67.6
Psat1g133640 Pisum sativum HOM05D002012 ORTHO05D001992 3.4e-18 95.1 85 52.9
ECA236G1251 Erigeron canadensis HOM05D002012 ORTHO05D001992 1.0e-17 93.6 98 59.2
HanXRQChr10g0319671 Helianthus annuus HOM05D002012 ORTHO05D001992 1.0e-17 93.6 96 59.4
TPR.G28669 Trifolium pratense HOM05D002012 ORTHO05D001992 1.7e-17 92.8 79 58.2
AT5G35560 Arabidopsis thaliana HOM05D002012 ORTHO05D001992 2.2e-17 92.4 87 56.3
Lsat_1_v5_gn_5_141180 Lactuca sativa HOM05D002012 ORTHO05D001992 2.2e-17 92.4 76 68.4
Lalb_Chr07g0181121 Lupinus albus HOM05D002012 ORTHO05D001992 5.0e-17 91.3 104 51.0
Aqoxy7G04080 Aquilegia oxysepala HOM05D002012 ORTHO05D001992 6.5e-17 90.9 96 57.3
Lalb_Chr13g0299491 Lupinus albus HOM05D002012 ORTHO05D001992 8.5e-17 90.5 104 52.9
Lj6g0020899 Lotus japonicus HOM05D002012 ORTHO05D001992 1.1e-16 90.1 104 51.0
RhsimUnG0220900 Rhododendron simsii HOM05D000879 ORTHO05D001992 1.1e-16 90.1 74 67.6
Zm00001eb193170 Zea mays HOM05D002012 ORTHO05D001992 1.1e-16 90.1 96 53.1
Phvul.003G131700 Phaseolus vulgaris HOM05D002012 ORTHO05D001992 6.1e-15 84.3 104 51.0
Hund26019 Selenicereus undatus HOM05D002012 ORTHO05D001992 6.1e-15 84.3 73 63.0
VMungo1215G3349 Vigna mungo HOM05D002012 ORTHO05D001992 8.0e-15 84.0 104 51.0
arahy.Tifrunner.gnm1.ann1.BD8MJQ Arachis hypogaea HOM05D002012 ORTHO05D001992 1.0e-14 83.6 107 47.7
arahy.Tifrunner.gnm1.ann1.H8KNJ8 Arachis hypogaea HOM05D002012 ORTHO05D001992 1.8e-14 82.8 107 46.7
Glyma.17G050100 Glycine max HOM05D002012 ORTHO05D001992 5.2e-14 81.3 104 49.0
Lj4g0000518 Lotus japonicus HOM05D002012 ORTHO05D001992 5.2e-14 81.3 97 50.5
Glyma.13G109600 Glycine max HOM05D002012 ORTHO05D001992 8.8e-14 80.5 104 49.0
Ah.09g231410 Amaranthus hybridus HOM05D002012 ORTHO05D001992 1.1e-13 80.1 100 51.0
DCAR_028322 Daucus carota HOM05D002012 ORTHO05D001992 1.1e-13 80.1 91 52.7
Sed0014285 Sechium edule HOM05D002012 ORTHO05D001992 1.5e-13 79.7 98 50.0
Actinidia35645 Actinidia chinensis HOM05D002012 ORTHO05D001992 6.3e-12 74.3 111 46.8
HanXRQChr06g0178161 Helianthus annuus HOM05D002012 ORTHO05D001992 8.2e-12 73.9 103 49.5
Lj9A280T16 Lonicera japonica HOM05D002012 ORTHO05D001992 7.0e-11 70.9 64 62.5
Ca_21316_v3 Cicer arietinum L. HOM05D002012 ORTHO05D001992 7.7e-10 67.4 97 44.3
arahy.Tifrunner.gnm1.ann1.I4CWBG Arachis hypogaea HOM05D002012 ORTHO05D001992 1.3e-09 66.6 94 45.7
arahy.Tifrunner.gnm1.ann1.TG362X Arachis hypogaea HOM05D002012 ORTHO05D001992 1.3e-09 66.6 94 45.7
Peaxi162Scf00127g00035 Petunia axillaris HOM05D002012 ORTHO05D001992 2.2e-09 65.9 47 68.1
Psat4g017920 Pisum sativum HOM05D002012 ORTHO05D001992 6.5e-09 64.3 75 49.3
HPP92_007956 Vanilla planifolia HOM05D002012 ORTHO05D001992 1.5e-08 63.2 60 53.3
AagrBONN_evm.TU.Sc2ySwM_117.1253 Anthoceros agrestis HOM05D002012 ORTHO05D001992 2.5e-08 62.4 100 44.0
Psat0s2767g0040 Pisum sativum HOM05D002012 ORTHO05D001992 3.2e-08 62.0 60 53.3
Mapoly0083s0022 Marchantia polymorpha HOM05D002012 ORTHO05D001992 9.4e-08 60.5 88 43.2
TPR.G9457 Trifolium pratense HOM05D002012 ORTHO05D001992 1.0e-06 57.0 52 53.8
SEGI_14720 Sequoiadendron giganteum HOM05D002012 ORTHO05D001992 1.4e-06 56.6 106 38.7
SMO228G0209 Selaginella moellendorffii HOM05D002012 ORTHO05D001992 2.3e-06 55.8 107 38.3
AUR62025192 Chenopodium quinoa HOM05D002012 ORTHO05D001992 4.0e-06 55.1 55 58.2
AUR62028982 Chenopodium quinoa HOM05D002012 ORTHO05D001992 4.0e-06 55.1 55 58.2


User provided reference genes

Program Settings