Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015338 Camellia sinensis var. sinensis HOM05D006855 ORTHO05D008695 5.8e-70 267.3 123 100.0
CSS0040008 Camellia sinensis var. sinensis HOM05D006855 ORTHO05D008695 2.7e-59 231.9 122 87.7
CSS0002421 Camellia sinensis var. sinensis HOM05D006855 ORTHO05D008695 1.6e-43 179.5 119 75.6
Actinidia15119 Actinidia chinensis HOM05D006855 ORTHO05D008695 2.1e-43 179.1 119 72.3
CSS0027349 Camellia sinensis var. sinensis HOM05D006855 ORTHO05D008695 2.1e-43 179.1 102 84.3
Dinv14753 Davidia involucrata HOM05D006855 ORTHO05D008695 4.3e-41 171.4 119 66.4
vmacro16160 Vaccinium macrocarpon HOM05D006855 ORTHO05D008695 2.2e-37 159.1 141 57.4
TAR629G1507 Trochodendron aralioides HOM05D006855 ORTHO05D008695 5.1e-34 147.9 121 57.0
Cc11_g16140 Coffea canephora HOM05D006855 ORTHO05D008695 2.1e-32 142.5 122 52.5
PSO210G7557 Papaver somniferum HOM05D006855 ORTHO05D008695 3.1e-31 138.7 119 52.1
Nn3g16630 Nelumbo nucifera HOM05D006855 ORTHO05D008695 4.0e-31 138.3 119 53.8
GSVIVG01000584001 Vitis vinifera HOM05D006855 ORTHO05D008695 5.3e-31 137.9 102 59.8
CiPaw.05G176800 Carya illinoinensis HOM05D006855 ORTHO05D008695 1.2e-30 136.7 119 53.8
Sopen01g004390 Solanum pennellii HOM05D006855 ORTHO05D008695 1.2e-30 136.7 119 51.3
PSO478G2928 Papaver somniferum HOM05D006855 ORTHO05D008695 4.5e-30 134.8 119 50.4
Solyc01g008900.4 Solanum lycopersicum HOM05D006855 ORTHO05D008695 4.5e-30 134.8 119 51.3
PGSC0003DMG400022710 Solanum tuberosum HOM05D006855 ORTHO05D008695 1.0e-29 133.7 119 51.3
Nitab4.5_0015117g0010 Nicotiana tabacum HOM05D006855 ORTHO05D008695 1.3e-29 133.3 119 52.1
MSTRG.548 Avicennia marina HOM05D006855 ORTHO05D008695 1.7e-29 132.9 119 53.8
Peaxi162Scf00050g00819 Petunia axillaris HOM05D006855 ORTHO05D008695 1.7e-29 132.9 119 51.3
Medtr3g086360 Medicago truncatula HOM05D006855 ORTHO05D008695 2.2e-29 132.5 119 51.3
CAN.G379.20 Capsicum annuum HOM05D006855 ORTHO05D008695 2.9e-29 132.1 119 49.6
Glyma.11G244400 Glycine max HOM05D006855 ORTHO05D008695 2.9e-29 132.1 119 52.1
Ciclev10031545m.g Citrus clementina HOM05D006855 ORTHO05D008695 4.9e-29 131.3 119 50.4
Ca_25129_v3 Cicer arietinum L. HOM05D006855 ORTHO05D008695 6.5e-29 131.0 119 48.7
TPR.G5676 Trifolium pratense HOM05D006855 ORTHO05D008695 6.5e-29 131.0 119 51.3
Phvul.001G256400 Phaseolus vulgaris HOM05D006855 ORTHO05D008695 8.4e-29 130.6 119 49.6
Sed0018660 Sechium edule HOM05D006855 ORTHO05D008695 8.4e-29 130.6 123 51.2
Aqoxy3G00656 Aquilegia oxysepala HOM05D006855 ORTHO05D008695 1.1e-28 130.2 122 49.2
Aqoxy3G01366 Aquilegia oxysepala HOM05D006855 ORTHO05D008695 1.1e-28 130.2 122 49.2
MBI19_g16323_MAGBIO Magnolia biondii HOM05D006855 ORTHO05D008695 1.1e-28 130.2 102 58.8
Haze_12292 Corylus avellana HOM05D006855 ORTHO05D008695 3.2e-28 128.6 120 51.7
Lj6g0028045 Lotus japonicus HOM05D006855 ORTHO05D008695 3.2e-28 128.6 119 50.4
Manes.12G019600 Manihot esculenta HOM05D006855 ORTHO05D008695 4.2e-28 128.3 119 51.3
Prupe.1G240700 Prunus persica HOM05D006855 ORTHO05D008695 4.2e-28 128.3 119 52.9
Lalb_Chr11g0075551 Lupinus albus HOM05D006855 ORTHO05D008695 9.3e-28 127.1 119 50.4
Atru.chr11.2187 Acer truncatum HOM05D006855 ORTHO05D008695 1.2e-27 126.7 119 51.3
Potri.010G051200 Populus trichocarpa HOM05D006855 ORTHO05D008695 1.6e-27 126.3 119 52.9
VMungo1383G3215 Vigna mungo HOM05D000933 ORTHO05D000820 2.1e-27 125.9 122 48.4
Duzib248G0606 Durio zibethinus HOM05D006855 ORTHO05D008695 2.7e-27 125.6 120 48.3
Psat5g092640 Pisum sativum HOM05D006855 ORTHO05D008695 2.7e-27 125.6 122 50.0
ClCG05G026110 Citrullus lanatus HOM05D006855 ORTHO05D008695 4.6e-27 124.8 122 50.0
arahy.Tifrunner.gnm1.ann1.FYV5AX Arachis hypogaea HOM05D006855 ORTHO05D008695 7.9e-27 124.0 122 47.5
Lsat_1_v5_gn_8_153661 Lactuca sativa HOM05D006855 ORTHO05D008695 7.9e-27 124.0 119 50.4
MD13G1105700 Malus domestica HOM05D006855 ORTHO05D008695 1.8e-26 122.9 119 50.4
ATR0796G133 Amborella trichopoda HOM05D006855 ORTHO05D008695 3.0e-26 122.1 119 49.6
ECA233G5842 Erigeron canadensis HOM05D000068 ORTHO05D000084 3.0e-26 122.1 119 52.1
arahy.Tifrunner.gnm1.ann1.74BAAJ Arachis hypogaea HOM05D006855 ORTHO05D008695 3.9e-26 121.7 103 53.4
FAN17G2133 Fragaria x ananassa HOM05D006855 ORTHO05D008695 3.9e-26 121.7 119 51.3
FAN14G3171 Fragaria x ananassa HOM05D006855 ORTHO05D008695 5.1e-26 121.3 104 55.8
Cpa.g.sc33.79 Carica papaya HOM05D006855 ORTHO05D008695 6.7e-26 120.9 107 51.4
FAN07G2733 Fragaria x ananassa HOM05D006855 ORTHO05D008695 6.7e-26 120.9 119 51.3
PGR083G2447 Punica granatum HOM05D006855 ORTHO05D008695 1.5e-25 119.8 102 56.9
Thecc.02G266900 Theobroma cacao HOM05D006855 ORTHO05D008695 1.5e-25 119.8 119 47.9
FAN18G3688 Fragaria x ananassa HOM05D006855 ORTHO05D008695 1.9e-25 119.4 102 55.9
CANSAT01G1415 Cannabis sativa HOM05D006855 ORTHO05D008695 2.5e-25 119.0 123 51.2
MELO3C011916.2 Cucumis melo HOM05D006855 ORTHO05D008695 2.5e-25 119.0 119 47.9
FAN12G0810 Fragaria x ananassa HOM05D006855 ORTHO05D008695 2.5e-25 119.0 119 50.4
TWI75G0344 Tripterygium wilfordii HOM05D006855 ORTHO05D008695 2.5e-25 119.0 119 49.6
RcHm_v2.0_Chr4g0432431 Rosa chinensis HOM05D006855 ORTHO05D008695 3.3e-25 118.6 119 50.4
COL.COLO4_23530 Corchorus olitorius HOM05D006855 ORTHO05D008695 4.3e-25 118.2 119 47.1
HanXRQChr12g0371791 Helianthus annuus HOM05D006855 ORTHO05D008695 4.3e-25 118.2 117 52.1
CsaV3_5G030740 Cucumis sativus L. HOM05D006855 ORTHO05D008695 1.3e-24 116.7 122 48.4
Eucgr.H02451 Eucalyptus grandis HOM05D006855 ORTHO05D008695 3.7e-24 115.2 119 48.7
FAN22G2334 Fragaria x ananassa HOM05D006855 ORTHO05D008695 3.7e-24 115.2 119 49.6
Gohir.D12G150600 Gossypium hirsutum HOM05D006855 ORTHO05D008695 6.3e-24 114.4 102 51.0
Migut.K00633 Erythranthe guttata HOM05D006855 ORTHO05D008695 2.4e-23 112.5 119 45.4
THA.LOC104825678 Tarenaya hassleriana HOM05D006855 ORTHO05D008695 2.4e-23 112.5 119 46.2
Gohir.A12G146000 Gossypium hirsutum HOM05D006855 ORTHO05D008695 4.1e-23 111.7 102 51.0
Gorai.008G162100 Gossypium raimondii HOM05D006855 ORTHO05D008695 5.3e-23 111.3 102 49.0
FAN08G3042 Fragaria x ananassa HOM05D006855 ORTHO05D008695 6.9e-23 110.9 95 54.7
SGA_v2.0_scaffold100G29585 Striga asiatica HOM05D006855 ORTHO05D008695 4.5e-22 108.2 121 43.0
Lj3A1062T101 Lonicera japonica HOM05D006855 ORTHO05D008695 2.2e-21 105.9 90 55.6
Ah.02g130370 Amaranthus hybridus HOM05D006855 ORTHO05D008695 5.0e-21 104.8 120 42.5
AUR62005523 Chenopodium quinoa HOM05D006855 ORTHO05D008695 8.5e-21 104.0 124 41.1
Carub.0005s0400 Capsella rubella HOM05D006855 ORTHO05D008695 1.1e-20 103.6 119 42.9
CDE02G0600 Ceratophyllum demersum HOM05D006855 ORTHO05D008695 3.2e-20 102.1 102 48.0
AUR62024216 Chenopodium quinoa HOM05D006855 ORTHO05D008695 5.5e-20 101.3 119 41.2
AT3G26115 Arabidopsis thaliana HOM05D006855 ORTHO05D008695 9.3e-20 100.5 119 42.0
SEGI_08498 Sequoiadendron giganteum HOM05D006855 ORTHO05D008695 1.6e-19 99.8 106 44.3
CARHR147120 Cardamine hirsuta HOM05D006855 ORTHO05D008695 2.1e-19 99.4 119 41.2
AL5G14830 Arabidopsis lyrata HOM05D006855 ORTHO05D008695 7.9e-19 97.4 104 43.3
Aa31LG2G6230 Aethionema arabicum HOM05D006855 ORTHO05D008695 1.0e-18 97.1 120 40.8
C07p35130 Brassica napus HOM05D006855 ORTHO05D008695 1.4e-18 96.7 119 42.0
Thhalv10004274m.g Eutrema salsugineum HOM05D006855 ORTHO05D008695 1.8e-18 96.3 119 40.3
HPP92_023148 Vanilla planifolia HOM05D006855 ORTHO05D008695 1.8e-18 96.3 101 42.6
A06p42230 Brassica napus HOM05D006855 ORTHO05D008695 6.7e-18 94.4 119 41.2
BraA06t27139Z Brassica rapa HOM05D006855 ORTHO05D008695 6.7e-18 94.4 119 41.2
BcaC06g33927 Brassica carinata HOM05D006855 ORTHO05D008695 1.5e-17 93.2 119 40.3
BolC7t44041H Brassica oleracea HOM05D006855 ORTHO05D008695 1.5e-17 93.2 119 40.3
Zm00001eb155910 Zea mays HOM05D006855 ORTHO05D008695 1.9e-17 92.8 104 44.2
Sp2g15320 Schrenkiella parvula HOM05D006855 ORTHO05D008695 2.5e-17 92.4 119 39.5
Os01g0695600 Oryza sativa ssp. japonica HOM05D006855 ORTHO05D008695 5.7e-17 91.3 103 43.7
BcaC06g31090 Brassica carinata HOM05D006855 ORTHO05D008695 2.8e-16 89.0 119 41.2
SalBow2G0666 Salvia bowleyana HOM05D006855 ORTHO05D008695 3.7e-16 88.6 117 42.7
Carub.0005s0511 Capsella rubella HOM05D006855 ORTHO05D008695 4.1e-15 85.1 70 55.7
Mapoly0058s0079 Marchantia polymorpha HOM05D006855 ORTHO05D008695 2.2e-13 79.3 119 37.8
unitig_699.g19941 Utricularia gibba HOM05D002671 ORTHO05D001380 6.5e-13 77.8 102 41.2
EL10As2g23185 Beta vulgaris HOM05D006855 ORTHO05D008695 1.1e-12 77.0 119 35.3
QL03p056162 Quercus lobata HOM05D006855 ORTHO05D008695 1.1e-12 77.0 73 46.6
VMungo1383G3417 Vigna mungo HOM05D006350 ORTHO05D007850 1.4e-12 76.6 67 49.3
Pp3c22_21870 Physcomitrium patens HOM05D006855 ORTHO05D008695 2.5e-12 75.9 103 36.9
Nitab4.5_0000718g0180 Nicotiana tabacum HOM05D006855 ORTHO05D008695 3.9e-10 68.6 60 51.7
SMO327G0033 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 6.7e-10 67.8 71 50.7
SMO327G0043 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 6.7e-10 67.8 71 50.7
ECA233G3820 Erigeron canadensis HOM05D006855 ORTHO05D008695 1.1e-09 67.0 60 58.3
QL03p056156 Quercus lobata HOM05D006855 ORTHO05D008695 9.7e-09 63.9 61 49.2
SMO203G0085 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 1.3e-08 63.5 71 47.9
FAN15G2953 Fragaria x ananassa HOM05D006855 ORTHO05D008695 8.2e-08 60.8 59 47.5
Sc11g0000830 Simmondsia chinensis HOM05D006855 ORTHO05D008695 2.4e-07 59.3 72 44.4
SMO203G0223 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 4.1e-07 58.5 69 46.4
FAN23G2199 Fragaria x ananassa HOM05D006855 ORTHO05D008695 5.3e-07 58.2 59 45.8
Cre01.g031850 Chlamydomonas reinhardtii HOM05D006855 ORTHO05D008695 7.0e-07 57.8 52 53.8
SMO203G0059 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 1.2e-06 57.0 69 46.4
Hund25410 Selenicereus undatus HOM05D006855 ORTHO05D008695 4.5e-06 55.1 48 52.1


User provided reference genes

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