Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015325 Camellia sinensis var. sinensis HOM05D006492 ORTHO05D008432 0.0e+00 1753.4 905 100.0
Actinidia25080 Actinidia chinensis HOM05D006492 ORTHO05D008432 0.0e+00 1314.7 881 77.3
Dinv38285 Davidia involucrata HOM05D006492 ORTHO05D008432 0.0e+00 1297.0 883 75.4
Rhsim09G0049200 Rhododendron simsii HOM05D006492 ORTHO05D008432 0.0e+00 1239.2 925 70.9
vmacro00516 Vaccinium macrocarpon HOM05D006492 ORTHO05D008432 0.0e+00 1234.6 900 72.0
Haze_11549 Corylus avellana HOM05D006492 ORTHO05D008432 0.0e+00 1122.1 885 65.4
GSVIVG01029042001 Vitis vinifera HOM05D006492 ORTHO05D008432 0.0e+00 1115.9 877 65.7
Cfa014875 Carpinus fangiana HOM05D006492 ORTHO05D008432 0.0e+00 1112.1 889 64.6
TAR365G0557 Trochodendron aralioides HOM05D006492 ORTHO05D008432 0.0e+00 1097.0 890 65.3
TAR365G0379 Trochodendron aralioides HOM05D006492 ORTHO05D008432 0.0e+00 1094.3 890 65.2
CiPaw.01G204100 Carya illinoinensis HOM05D006492 ORTHO05D008432 0.0e+00 1090.5 884 64.1
QL05p063769 Quercus lobata HOM05D006492 ORTHO05D008432 0.0e+00 1080.1 881 63.8
Potri.003G175300 Populus trichocarpa HOM05D006492 ORTHO05D008432 3.0e-309 1065.1 880 62.0
Lju414A5T31 Lonicera japonica HOM05D006492 ORTHO05D008432 2.7e-305 1052.0 836 66.3
MD00G1101100 Malus domestica HOM05D006492 ORTHO05D008432 1.2e-300 1036.6 893 61.0
Potri.001G053000 Populus trichocarpa HOM05D006492 ORTHO05D008432 9.8e-300 1033.5 883 60.5
Duzib212G0418 Durio zibethinus HOM05D006492 ORTHO05D008432 1.3e-296 1023.1 883 59.0
Thecc.04G212600 Theobroma cacao HOM05D006492 ORTHO05D008432 3.3e-295 1018.5 900 58.2
Prupe.1G060300 Prunus persica HOM05D006492 ORTHO05D008432 4.3e-295 1018.1 893 60.1
MSTRG.24638 Avicennia marina HOM05D006492 ORTHO05D008432 6.4e-291 1004.2 883 59.8
Ciclev10004244m.g Citrus clementina HOM05D006492 ORTHO05D008432 4.1e-290 1001.5 878 58.7
Manes.15G049000 Manihot esculenta HOM05D006492 ORTHO05D008432 4.1e-290 1001.5 880 59.3
Sabra01G0037500 Salix brachista HOM05D006492 ORTHO05D008432 1.2e-289 1000.0 879 59.5
Nitab4.5_0012325g0010 Nicotiana tabacum HOM05D006492 ORTHO05D008432 8.6e-288 993.8 883 58.3
Nitab4.5_0000493g0030 Nicotiana tabacum HOM05D006492 ORTHO05D008432 7.3e-287 990.7 885 58.1
Cc03_g07180 Coffea canephora HOM05D006492 ORTHO05D008432 4.7e-286 988.0 889 58.4
Peaxi162Scf00047g01324 Petunia axillaris HOM05D006492 ORTHO05D008432 6.2e-286 987.6 884 58.5
RcHm_v2.0_Chr4g0396881 Rosa chinensis HOM05D006492 ORTHO05D008432 5.2e-285 984.6 892 58.7
Gorai.006G055600 Gossypium raimondii HOM05D006492 ORTHO05D008432 2.6e-284 982.2 884 57.6
Gohir.D09G053008 Gossypium hirsutum HOM05D006492 ORTHO05D008432 4.9e-283 978.0 884 57.6
FAN07G0933 Fragaria x ananassa HOM05D006492 ORTHO05D008432 4.1e-282 974.9 917 57.0
FAN12G2087 Fragaria x ananassa HOM05D006492 ORTHO05D008432 5.4e-282 974.5 895 57.7
Sopen09g034300 Solanum pennellii HOM05D006492 ORTHO05D008432 3.5e-281 971.8 884 56.9
Migut.N00332 Erythranthe guttata HOM05D006492 ORTHO05D008432 5.0e-280 968.0 893 58.7
FAN22G2187 Fragaria x ananassa HOM05D006492 ORTHO05D008432 3.3e-279 965.3 895 57.5
COL.COLO4_34090 Corchorus olitorius HOM05D006492 ORTHO05D008432 7.3e-279 964.1 899 56.3
CAN.G1552.5 Capsicum annuum HOM05D006492 ORTHO05D008432 5.2e-277 958.0 901 55.4
MBI10_g16832_MAGBIO Magnolia biondii HOM05D006492 ORTHO05D008432 1.1e-274 950.3 894 57.2
TWI09G1643 Tripterygium wilfordii HOM05D006492 ORTHO05D008432 1.2e-273 946.8 929 54.7
Oeu051651.1 Olea europaea HOM05D006492 ORTHO05D008432 2.1e-270 936.0 771 62.6
vmacro22821 Vaccinium macrocarpon HOM05D006492 ORTHO05D008432 3.6e-270 935.3 942 58.0
Nn1g03104 Nelumbo nucifera HOM05D006492 ORTHO05D008432 4.0e-269 931.8 889 55.6
DCAR_002278 Daucus carota HOM05D006492 ORTHO05D008432 1.5e-268 929.9 923 55.3
FAN17G1964 Fragaria x ananassa HOM05D006492 ORTHO05D008432 1.5e-268 929.9 895 56.2
CANSAT78G0108 Cannabis sativa HOM05D006492 ORTHO05D008432 4.4e-268 928.3 895 54.9
SGA_v2.0_scaffold2G00843 Striga asiatica HOM05D006492 ORTHO05D008432 1.3e-267 926.8 884 55.5
ECA233G5226 Erigeron canadensis HOM05D006492 ORTHO05D008432 6.4e-267 924.5 876 56.6
arahy.Tifrunner.gnm1.ann1.TP3X9S Arachis hypogaea HOM05D006492 ORTHO05D008432 4.3e-263 911.8 882 53.6
Cpa.g.sc59.86 Carica papaya HOM05D006492 ORTHO05D008432 8.1e-262 907.5 819 58.5
SalBow3G2597 Salvia bowleyana HOM05D006492 ORTHO05D008432 1.8e-261 906.4 883 55.7
HanXRQChr07g0185861 Helianthus annuus HOM05D006492 ORTHO05D008432 6.9e-261 904.4 876 55.8
Glyma.10G192800 Glycine max HOM05D006492 ORTHO05D008432 2.6e-260 902.5 904 52.1
Eucgr.H00098 Eucalyptus grandis HOM05D006492 ORTHO05D008432 1.7e-259 899.8 879 54.2
Phvul.007G134600 Phaseolus vulgaris HOM05D006492 ORTHO05D008432 6.4e-259 897.9 882 52.5
VMungo0720G0701 Vigna mungo HOM05D006492 ORTHO05D008432 1.2e-257 893.6 882 52.4
Glyma.20G197700 Glycine max HOM05D006492 ORTHO05D008432 2.5e-255 885.9 904 51.2
EL10Ac3g06781 Beta vulgaris HOM05D006492 ORTHO05D008432 1.6e-254 883.2 901 51.7
Aqoxy2G03837 Aquilegia oxysepala HOM05D006492 ORTHO05D008432 1.2e-252 877.1 888 53.6
Hund24849 Selenicereus undatus HOM05D006492 ORTHO05D008432 2.9e-251 872.5 885 51.9
Lj5g0018955 Lotus japonicus HOM05D006492 ORTHO05D008432 1.9e-250 869.8 907 51.2
Lalb_Chr21g0312661 Lupinus albus HOM05D006492 ORTHO05D008432 4.6e-249 865.1 903 51.1
ClCG05G003620 Citrullus lanatus HOM05D006492 ORTHO05D008432 9.6e-247 857.4 881 50.6
AUR62035934 Chenopodium quinoa HOM05D006492 ORTHO05D008432 2.1e-246 856.3 888 51.1
Sc14g0004710 Simmondsia chinensis HOM05D006492 ORTHO05D008432 6.9e-245 851.3 879 51.3
Ah.04g153340 Amaranthus hybridus HOM05D006492 ORTHO05D008432 9.0e-245 850.9 903 49.4
TPR.G13408 Trifolium pratense HOM05D006492 ORTHO05D008432 1.7e-243 846.7 919 49.2
Medtr1g090050 Medicago truncatula HOM05D006492 ORTHO05D008432 4.9e-243 845.1 919 48.5
Ca_10406_v3 Cicer arietinum L. HOM05D006492 ORTHO05D008432 3.2e-242 842.4 890 50.7
Lsat_1_v5_gn_6_62680 Lactuca sativa HOM05D006492 ORTHO05D008432 1.6e-241 840.1 879 52.7
Psat6g170280 Pisum sativum HOM05D006492 ORTHO05D008432 3.1e-237 825.9 915 48.6
unitig_899.g15531 Utricularia gibba HOM05D006492 ORTHO05D008432 5.3e-237 825.1 890 51.1
CsaV3_3G011330 Cucumis sativus L. HOM05D006492 ORTHO05D008432 3.4e-236 822.4 883 49.5
Sed0001454 Sechium edule HOM05D006492 ORTHO05D008432 3.2e-234 815.8 884 49.1
PGR142G2376 Punica granatum HOM05D006492 ORTHO05D008432 2.3e-232 809.7 898 50.1
Atru.chr4.1802 Acer truncatum HOM05D006492 ORTHO05D008432 6.1e-225 785.0 659 61.0
AL1G14360 Arabidopsis lyrata HOM05D006492 ORTHO05D008432 1.3e-219 767.3 885 47.3
Sp1g03490 Schrenkiella parvula HOM05D006492 ORTHO05D008432 2.9e-219 766.1 878 48.2
AT1G04650 Arabidopsis thaliana HOM05D006492 ORTHO05D008432 2.1e-217 760.0 883 46.8
PSO017G3024 Papaver somniferum HOM05D006492 ORTHO05D008432 1.5e-215 753.8 938 48.5
PSO063G2396 Papaver somniferum HOM05D006492 ORTHO05D008432 4.4e-215 752.3 926 48.5
CARHR004030 Cardamine hirsuta HOM05D006492 ORTHO05D008432 7.4e-215 751.5 878 46.9
Carub.0001s0390 Capsella rubella HOM05D006492 ORTHO05D008432 3.7e-214 749.2 882 46.3
C08p01350 Brassica napus HOM05D006492 ORTHO05D008432 4.8e-214 748.8 885 46.6
BolC8t46943H Brassica oleracea HOM05D006492 ORTHO05D008432 8.2e-214 748.0 885 46.4
ATR0787G047 Amborella trichopoda HOM05D006492 ORTHO05D008432 1.4e-213 747.3 897 46.6
THA.LOC104816017 Tarenaya hassleriana HOM05D006492 ORTHO05D008432 1.8e-213 746.9 882 47.5
A08p36780 Brassica napus HOM05D006492 ORTHO05D008432 2.4e-213 746.5 885 46.8
BraA08t35581Z Brassica rapa HOM05D006492 ORTHO05D008432 4.5e-212 742.3 885 46.3
CDE04G0311 Ceratophyllum demersum HOM05D006492 ORTHO05D008432 3.8e-211 739.2 829 47.3
Thhalv10006668m.g Eutrema salsugineum HOM05D006492 ORTHO05D008432 5.0e-211 738.8 897 45.5
MELO3C006341.2 Cucumis melo HOM05D006492 ORTHO05D008432 2.5e-210 736.5 818 47.8
BcaC07g36892 Brassica carinata HOM05D006492 ORTHO05D008432 6.1e-209 731.9 885 46.2
A10p03080 Brassica napus HOM05D006492 ORTHO05D008432 2.8e-206 723.0 883 45.8
Aa31LG1G20220 Aethionema arabicum HOM05D006492 ORTHO05D008432 5.0e-195 685.6 892 42.5
Zm00001eb003580 Zea mays HOM05D006492 ORTHO05D008432 1.2e-183 647.9 874 43.0
SHI00019 Sapria himalayana HOM05D006492 ORTHO05D000009 3.5e-180 636.3 893 42.4
FvH4_4g05680 Fragaria vesca HOM05D006492 ORTHO05D008432 4.4e-175 619.4 586 56.0
Solyc09g091370.4 Solanum lycopersicum HOM05D006492 ORTHO05D008432 3.6e-169 599.7 558 56.6
Os03g0144000 Oryza sativa ssp. japonica HOM05D006492 ORTHO05D008432 3.4e-167 593.2 886 40.9
SEGI_21616 Sequoiadendron giganteum HOM05D006492 ORTHO05D008432 1.7e-150 537.7 906 37.5
BraA10t42581Z Brassica rapa HOM05D006492 ORTHO05D008432 5.4e-133 479.6 586 44.9
Pp3c16_18660 Physcomitrium patens HOM05D006492 ORTHO05D008432 1.5e-66 258.8 877 25.7
HPP92_025559 Vanilla planifolia HOM05D006492 ORTHO05D008432 1.6e-60 238.8 347 42.1
HPP92_025560 Vanilla planifolia HOM05D006492 ORTHO05D008432 1.7e-57 228.8 330 43.6
SMO117G0361 Selaginella moellendorffii HOM05D006492 ORTHO05D008432 6.6e-54 216.9 685 26.9
Mapoly0061s0085 Marchantia polymorpha HOM05D006492 ORTHO05D008432 7.1e-40 170.2 455 28.1
arahy.Tifrunner.gnm1.ann1.LCJ3P1 Arachis hypogaea HOM05D006492 ORTHO05D008432 6.2e-36 157.1 198 44.4
AagrBONN_evm.TU.Sc2ySwM_117.2272 Anthoceros agrestis HOM05D006492 ORTHO05D008432 2.5e-29 135.2 420 27.6
C05p02850 Brassica napus HOM05D006492 ORTHO05D008432 7.6e-26 123.6 136 47.8
CBR_g61877 Chara braunii HOM05D006492 ORTHO05D008432 1.9e-24 119.0 731 22.8
C05p02840 Brassica napus HOM05D006492 ORTHO05D008432 7.1e-16 90.5 117 41.9
Nitab4.5_0005468g0040 Nicotiana tabacum HOM05D001280 ORTHO05D008432 1.2e-10 73.2 107 41.1
Atru.chr4.1801 Acer truncatum HOM05D006492 ORTHO05D008432 1.9e-08 65.9 82 46.3
Lju414A5G29 Lonicera japonica HOM05D006492 ORTHO05D008432 9.3e-08 63.5 63 60.3
BcaC07g36900 Brassica carinata HOM05D006492 ORTHO05D008432 2.7e-07 62.0 70 45.7
Gohir.D04G085800 Gossypium hirsutum HOM05D017690 ORTHO05D015145 5.1e-06 57.8 64 50.0


User provided reference genes

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