Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015317 Camellia sinensis var. sinensis HOM05D008098 ORTHO05D009893 1.0e-81 306.6 150 100.0
Rhsim04G0199800 Rhododendron simsii HOM05D008098 ORTHO05D009893 9.0e-25 117.5 152 44.1
Dinv14021 Davidia involucrata HOM05D008098 ORTHO05D009893 1.2e-24 117.1 151 45.0
Dinv44560 Davidia involucrata HOM05D008098 ORTHO05D009893 3.4e-24 115.5 113 48.7
Hma1.2p1_1572F.1_g291470 Hydrangea macrophylla HOM05D008098 ORTHO05D009893 5.5e-22 108.2 140 42.9
Actinidia23529 Actinidia chinensis HOM05D008098 ORTHO05D009893 4.6e-21 105.1 119 49.6
TAR260G0007 Trochodendron aralioides HOM05D008098 ORTHO05D009893 1.8e-17 93.2 109 45.0
TAR633G1927 Trochodendron aralioides HOM05D008098 ORTHO05D009893 3.1e-17 92.4 94 46.8
TAR636G3050 Trochodendron aralioides HOM05D008098 ORTHO05D009893 1.2e-16 90.5 92 47.8
TAR633G0062 Trochodendron aralioides HOM05D008098 ORTHO05D009893 2.0e-16 89.7 94 44.7
Gohir.D09G220150 Gossypium hirsutum HOM05D008098 ORTHO05D009893 3.9e-12 75.5 72 50.0
Sc17g0001270 Simmondsia chinensis HOM05D008098 ORTHO05D009893 5.1e-12 75.1 97 36.1
Aqoxy5G00430 Aquilegia oxysepala HOM05D008098 ORTHO05D009893 1.5e-11 73.6 89 42.7
Nn1g02382 Nelumbo nucifera HOM05D008098 ORTHO05D009893 3.3e-11 72.4 78 39.7
Atru.chr4.2423 Acer truncatum HOM05D008098 ORTHO05D009893 2.8e-10 69.3 94 38.3
GSVIVG01001187001 Vitis vinifera HOM05D008098 ORTHO05D009893 2.8e-10 69.3 111 34.2
CiPaw.07G089300 Carya illinoinensis HOM05D008098 ORTHO05D009893 3.7e-10 68.9 63 52.4
Dinv34781 Davidia involucrata HOM05D008098 ORTHO05D009893 1.1e-09 67.4 93 38.7
Prupe.1G018100 Prunus persica HOM05D008098 ORTHO05D009893 1.1e-09 67.4 75 41.3
Manes.15G031000 Manihot esculenta HOM05D008098 ORTHO05D009893 1.4e-09 67.0 110 33.6
CSS0035580 Camellia sinensis var. sinensis HOM05D008098 ORTHO05D009893 1.8e-09 66.6 63 42.9
CSS0044396 Camellia sinensis var. sinensis HOM05D008098 ORTHO05D009893 1.8e-09 66.6 107 33.6
Rhsim13G0027200 Rhododendron simsii HOM05D008098 ORTHO05D009893 1.8e-09 66.6 111 36.0
Actinidia00786 Actinidia chinensis HOM05D008098 ORTHO05D009893 3.1e-09 65.9 96 36.5
PGR044G2144 Punica granatum HOM05D008098 ORTHO05D009893 4.1e-09 65.5 61 44.3
SGA_v2.0_scaffold148G36431 Striga asiatica HOM05D030106 ORTHO05D030155 9.1e-09 64.3 73 41.1
AL5G46080 Arabidopsis lyrata HOM05D013860 ORTHO05D009893 2.0e-08 63.2 93 34.4
Haze_04677 Corylus avellana HOM05D008098 ORTHO05D009893 3.4e-08 62.4 69 44.9
Oeu023884.1 Olea europaea HOM05D008098 ORTHO05D009893 3.4e-08 62.4 104 28.8
Potri.002G050100 Populus trichocarpa HOM05D008098 ORTHO05D009893 5.9e-08 61.6 40 57.5
Migut.D00327 Erythranthe guttata HOM05D008098 ORTHO05D009893 7.7e-08 61.2 122 32.8
Cfa006173 Carpinus fangiana HOM05D008098 ORTHO05D009893 1.0e-07 60.8 69 44.9
Dinv17090 Davidia involucrata HOM05D008098 ORTHO05D009893 1.0e-07 60.8 67 43.3
Sabra05G0162400 Salix brachista HOM05D008098 ORTHO05D009893 1.3e-07 60.5 40 57.5
MSTRG.12554 Avicennia marina HOM05D008098 ORTHO05D009893 5.0e-07 58.5 69 40.6
TWI09G1469 Tripterygium wilfordii HOM05D039213 ORTHO05D037432 5.0e-07 58.5 126 31.7
Atru.chr5.1485 Acer truncatum HOM05D008098 ORTHO05D009893 6.5e-07 58.2 108 31.5
EL10Ac5g10528 Beta vulgaris HOM05D008098 ORTHO05D009893 6.5e-07 58.2 40 55.0
Lj2A1168T22 Lonicera japonica HOM05D008098 ORTHO05D009893 6.5e-07 58.2 96 34.4
Lj9A530T23 Lonicera japonica HOM05D008098 ORTHO05D009893 6.5e-07 58.2 96 34.4
Prupe.8G237300 Prunus persica HOM05D008098 ORTHO05D009893 8.5e-07 57.8 79 36.7
MSTRG.18252 Avicennia marina HOM05D008098 ORTHO05D009893 1.1e-06 57.4 40 55.0
AT3G63230 Arabidopsis thaliana HOM05D013860 ORTHO05D009893 2.5e-06 56.2 74 39.2
MSTRG.17457 Avicennia marina HOM05D008098 ORTHO05D009893 5.5e-06 55.1 40 55.0
Duzib138G1817 Durio zibethinus HOM05D008098 ORTHO05D009893 9.4e-06 54.3 71 35.2
FAN20G2698 Fragaria x ananassa HOM05D008098 ORTHO05D009893 9.4e-06 54.3 77 40.3
FAN27G1076 Fragaria x ananassa HOM05D008098 ORTHO05D009893 9.4e-06 54.3 77 40.3
Sp5g00310 Schrenkiella parvula HOM05D013860 ORTHO05D009893 9.4e-06 54.3 68 36.8


User provided reference genes

Program Settings