Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015308 Camellia sinensis var. sinensis HOM05D005662 ORTHO05D007004 5.5e-130 467.6 231 100.0
Actinidia25029 Actinidia chinensis HOM05D005662 ORTHO05D007004 3.3e-103 378.6 233 80.3
vmacro06774 Vaccinium macrocarpon HOM05D005662 ORTHO05D007004 1.8e-101 372.9 231 79.7
Dinv22971 Davidia involucrata HOM05D005662 ORTHO05D007004 1.5e-98 363.2 232 77.6
Actinidia13561 Actinidia chinensis HOM05D005662 ORTHO05D007004 2.0e-95 352.8 228 77.2
Ciclev10005797m.g Citrus clementina HOM05D005662 ORTHO05D007004 2.2e-94 349.4 232 75.4
Atru.chr1.651 Acer truncatum HOM05D005662 ORTHO05D007004 2.8e-94 349.0 233 76.8
Manes.06G137000 Manihot esculenta HOM05D005662 ORTHO05D007004 1.8e-93 346.3 232 73.7
Hma1.2p1_0654F.1_g196460 Hydrangea macrophylla HOM05D005662 ORTHO05D007004 7.0e-93 344.4 231 73.2
Thecc.03G160400 Theobroma cacao HOM05D005662 ORTHO05D007004 1.6e-92 343.2 229 75.1
GSVIVG01018540001 Vitis vinifera HOM05D005662 ORTHO05D007004 7.7e-92 340.9 229 73.4
Dinv28543 Davidia involucrata HOM05D005662 ORTHO05D007004 1.7e-91 339.7 233 73.0
COL.COLO4_14166 Corchorus olitorius HOM05D005662 ORTHO05D007004 8.5e-91 337.4 234 71.8
TWI39G1176 Tripterygium wilfordii HOM05D005662 ORTHO05D007004 5.5e-90 334.7 230 71.3
Potri.015G129900 Populus trichocarpa HOM05D005662 ORTHO05D007004 1.2e-89 333.6 233 72.1
Duzib205G1232 Durio zibethinus HOM05D005662 ORTHO05D007004 6.1e-89 331.3 239 72.4
Prupe.2G281200 Prunus persica HOM05D005662 ORTHO05D007004 6.1e-89 331.3 232 72.4
Potri.012G128500 Populus trichocarpa HOM05D005662 ORTHO05D007004 1.2e-87 327.0 227 70.5
Gorai.001G237900 Gossypium raimondii HOM05D005662 ORTHO05D007004 1.5e-87 326.6 232 69.8
QL09p018886 Quercus lobata HOM05D005662 ORTHO05D007004 2.0e-87 326.2 229 72.5
MD07G1257000 Malus domestica HOM05D005662 ORTHO05D007004 2.6e-87 325.9 232 72.4
MSTRG.8809 Avicennia marina HOM05D005662 ORTHO05D007004 4.4e-87 325.1 231 70.1
Gohir.D07G210500 Gossypium hirsutum HOM05D005662 ORTHO05D007004 4.4e-87 325.1 232 69.4
MD01G1184800 Malus domestica HOM05D005662 ORTHO05D007004 1.7e-86 323.2 232 69.8
Rhsim03G0170700 Rhododendron simsii HOM05D005662 ORTHO05D007004 2.2e-86 322.8 284 62.0
CANSAT56G2670 Cannabis sativa HOM05D005662 ORTHO05D007004 2.8e-86 322.4 233 71.2
CiPaw.03G096300 Carya illinoinensis HOM05D005662 ORTHO05D007004 2.4e-85 319.3 233 70.4
Gohir.A07G204500 Gossypium hirsutum HOM05D005662 ORTHO05D007004 2.4e-85 319.3 232 69.4
TAR374G0299 Trochodendron aralioides HOM05D005662 ORTHO05D007004 3.1e-85 318.9 234 68.8
Cc02_g04010 Coffea canephora HOM05D005662 ORTHO05D007004 2.0e-84 316.2 231 67.5
Solyc03g083540.3 Solanum lycopersicum HOM05D005662 ORTHO05D007004 2.0e-84 316.2 228 67.5
MBI12_g31644_MAGBIO Magnolia biondii HOM05D005662 ORTHO05D007004 4.5e-84 315.1 231 67.1
THA.LOC104821401 Tarenaya hassleriana HOM05D005662 ORTHO05D007004 4.5e-84 315.1 230 69.1
Eucgr.K00149 Eucalyptus grandis HOM05D005662 ORTHO05D007004 5.9e-84 314.7 234 69.2
Sopen03g023350 Solanum pennellii HOM05D005662 ORTHO05D007004 5.9e-84 314.7 228 67.1
TAR375G0912 Trochodendron aralioides HOM05D005662 ORTHO05D007004 1.0e-83 313.9 222 71.2
Nn4g26371 Nelumbo nucifera HOM05D005662 ORTHO05D007004 3.8e-83 312.0 233 69.5
Lsat_1_v5_gn_8_9401 Lactuca sativa HOM05D005662 ORTHO05D007004 6.5e-83 311.2 234 67.9
Nitab4.5_0000072g0480 Nicotiana tabacum HOM05D005662 ORTHO05D007004 3.3e-82 308.9 231 66.7
Peaxi162Scf01372g00048 Petunia axillaris HOM05D005662 ORTHO05D007004 1.2e-81 307.0 228 64.5
PGSC0003DMG400023012 Solanum tuberosum HOM05D005662 ORTHO05D007004 1.2e-81 307.0 228 65.8
Nitab4.5_0000481g0050 Nicotiana tabacum HOM05D005662 ORTHO05D007004 1.6e-81 306.6 231 66.7
RcHm_v2.0_Chr1g0374961 Rosa chinensis HOM05D005662 ORTHO05D007004 1.6e-81 306.6 233 68.7
PGR142G0586 Punica granatum HOM05D005662 ORTHO05D007004 2.1e-81 306.2 232 67.2
Thhalv10004861m.g Eutrema salsugineum HOM05D005662 ORTHO05D007004 1.4e-80 303.5 223 69.5
ECA232G3412 Erigeron canadensis HOM05D005662 ORTHO05D007004 1.8e-80 303.1 229 68.1
Sabra12G0096500 Salix brachista HOM05D005662 ORTHO05D007004 4.0e-80 302.0 208 70.7
FvH4_7g28050 Fragaria vesca HOM05D005662 ORTHO05D007004 1.2e-79 300.4 233 67.8
DCAR_015743 Daucus carota HOM05D005662 ORTHO05D007004 1.5e-79 300.1 230 64.8
HanXRQChr08g0223561 Helianthus annuus HOM05D005662 ORTHO05D007004 3.7e-78 295.4 229 67.2
Carub.0008s2298 Capsella rubella HOM05D005662 ORTHO05D007004 6.3e-78 294.7 229 65.1
SalBow4G2223 Salvia bowleyana HOM05D005662 ORTHO05D007004 1.4e-77 293.5 233 64.4
SalBow4G3324 Salvia bowleyana HOM05D005662 ORTHO05D007004 1.4e-77 293.5 233 64.4
Oeu039209.1 Olea europaea HOM05D005662 ORTHO05D007004 4.1e-77 292.0 211 68.7
Sp2g25490 Schrenkiella parvula HOM05D005662 ORTHO05D007004 9.2e-77 290.8 233 61.8
Migut.F00442 Erythranthe guttata HOM05D005662 ORTHO05D007004 3.5e-76 288.9 231 62.8
SGA_v2.0_scaffold2G01165 Striga asiatica HOM05D005662 ORTHO05D007004 4.5e-76 288.5 237 62.9
AL8G39110 Arabidopsis lyrata HOM05D005662 ORTHO05D007004 7.8e-76 287.7 229 63.8
Duzib084G0609 Durio zibethinus HOM05D005662 ORTHO05D007004 7.8e-76 287.7 229 65.9
CARHR276070 Cardamine hirsuta HOM05D005662 ORTHO05D007004 1.0e-75 287.3 231 63.6
A02p42240 Brassica napus HOM05D005662 ORTHO05D007004 5.0e-75 285.0 229 62.0
C02p62090 Brassica napus HOM05D005662 ORTHO05D007004 1.5e-74 283.5 224 63.4
Sed0027239 Sechium edule HOM05D005662 ORTHO05D007004 3.3e-74 282.3 240 61.7
AT5G62290 Arabidopsis thaliana HOM05D005662 ORTHO05D007004 1.6e-73 280.0 229 62.9
CDE02G0217 Ceratophyllum demersum HOM05D005662 ORTHO05D007004 1.6e-73 280.0 227 62.1
Ca_30761_v3 Cicer arietinum L. HOM05D005662 ORTHO05D007004 2.1e-73 279.6 218 64.2
MELO3C005412.2 Cucumis melo HOM05D005662 ORTHO05D007004 2.1e-73 279.6 236 63.6
HanXRQChr16g0512531 Helianthus annuus HOM05D005662 ORTHO05D007004 2.1e-73 279.6 234 65.4
BcaB07g29785 Brassica carinata HOM05D005662 ORTHO05D007004 2.8e-73 279.3 232 61.2
Phvul.011G004300 Phaseolus vulgaris HOM05D005662 ORTHO05D007004 2.8e-73 279.3 216 64.4
Aa31LG11G1300 Aethionema arabicum HOM05D005662 ORTHO05D007004 1.0e-72 277.3 231 61.0
PSO782G3258 Papaver somniferum HOM05D005662 ORTHO05D007004 1.4e-72 276.9 230 61.3
SGA_v2.0_scaffold486G52387 Striga asiatica HOM05D005662 ORTHO05D007004 3.0e-72 275.8 234 62.0
Medtr4g033850 Medicago truncatula HOM05D005662 ORTHO05D007004 4.0e-72 275.4 216 64.4
Lalb_Chr04g0260971 Lupinus albus HOM05D005662 ORTHO05D007004 5.2e-72 275.0 231 61.9
PSO478G4436 Papaver somniferum HOM05D005662 ORTHO05D007004 6.8e-72 274.6 229 60.7
Aqoxy7G00656 Aquilegia oxysepala HOM05D005662 ORTHO05D007004 1.2e-71 273.9 246 58.1
ClCG01G005160 Citrullus lanatus HOM05D005662 ORTHO05D007004 1.7e-70 270.0 279 54.8
VMungo1127G2067 Vigna mungo HOM05D005662 ORTHO05D007004 4.9e-70 268.5 218 64.7
Glyma.14G044000 Glycine max HOM05D005662 ORTHO05D007004 8.3e-70 267.7 214 63.6
BolC3t18716H Brassica oleracea HOM05D005662 ORTHO05D007004 1.4e-69 266.9 232 60.3
arahy.Tifrunner.gnm1.ann1.93Q1AU Arachis hypogaea HOM05D005662 ORTHO05D007004 1.9e-69 266.5 228 61.8
TPR.G15119 Trifolium pratense HOM05D005662 ORTHO05D007004 2.4e-69 266.2 216 61.1
BraA06t25849Z Brassica rapa HOM05D005662 ORTHO05D007004 5.4e-69 265.0 234 59.0
Psat7g191960 Pisum sativum HOM05D005662 ORTHO05D007004 7.0e-69 264.6 233 60.1
Lalb_Chr15g0077021 Lupinus albus HOM05D005662 ORTHO05D007004 9.2e-69 264.2 224 63.8
arahy.Tifrunner.gnm1.ann1.TMT042 Arachis hypogaea HOM05D005662 ORTHO05D007004 1.6e-68 263.5 228 61.4
unitig_37.g12504 Utricularia gibba HOM05D005662 ORTHO05D007004 2.0e-68 263.1 213 63.4
arahy.Tifrunner.gnm1.ann1.QSR7PX Arachis hypogaea HOM05D005662 ORTHO05D007004 3.5e-68 262.3 228 61.0
arahy.Tifrunner.gnm1.ann1.LZP622 Arachis hypogaea HOM05D005662 ORTHO05D007004 4.6e-68 261.9 228 61.4
BraA02t09152Z Brassica rapa HOM05D005662 ORTHO05D007004 2.3e-67 259.6 240 57.1
Glyma.09G233200 Glycine max HOM05D005662 ORTHO05D007004 5.0e-67 258.5 216 62.5
EL10Ac3g05805 Beta vulgaris HOM05D005662 ORTHO05D007004 6.6e-67 258.1 239 58.2
Hund04625 Selenicereus undatus HOM05D005662 ORTHO05D007004 8.6e-67 257.7 210 61.4
HPP92_004603 Vanilla planifolia HOM05D005662 ORTHO05D007004 3.3e-66 255.8 224 60.7
Lj3g0023650 Lotus japonicus HOM05D005662 ORTHO05D007004 1.4e-64 250.4 246 54.1
C03p64570 Brassica napus HOM05D000207 ORTHO05D001482 5.8e-63 245.0 212 60.4
A06p29040 Brassica napus HOM05D000207 ORTHO05D001482 1.7e-62 243.4 213 59.2
ATR0733G084 Amborella trichopoda HOM05D005662 ORTHO05D007004 5.4e-61 238.4 218 55.0
Atru.chr1.654 Acer truncatum HOM05D005662 ORTHO05D007004 1.3e-59 233.8 167 71.9
Sed0014362 Sechium edule HOM05D005662 ORTHO05D007004 1.1e-58 230.7 231 55.0
Ca_00244_v3 Cicer arietinum L. HOM05D005662 ORTHO05D007004 6.2e-57 224.9 160 68.1
Haze_13835 Corylus avellana HOM05D005662 ORTHO05D007004 6.2e-57 224.9 231 53.7
Cfa008223 Carpinus fangiana HOM05D000922 ORTHO05D007004 2.9e-54 216.1 156 68.6
Os10g0170000 Oryza sativa ssp. japonica HOM05D005662 ORTHO05D007004 4.9e-54 215.3 230 51.3
Os03g0249300 Oryza sativa ssp. japonica HOM05D005662 ORTHO05D007004 1.9e-53 213.4 239 49.8
Zm00001eb224250 Zea mays HOM05D005662 ORTHO05D007004 1.6e-49 200.3 232 47.4
SEGI_33447 Sequoiadendron giganteum HOM05D005662 ORTHO05D007004 6.2e-49 198.4 213 51.6
Zm00001eb010690 Zea mays HOM05D005662 ORTHO05D007004 1.1e-45 187.6 266 41.0
SMO351G0592 Selaginella moellendorffii HOM05D005662 ORTHO05D007004 6.0e-44 181.8 222 45.5
PSO063G7367 Papaver somniferum HOM05D005662 ORTHO05D007004 2.3e-43 179.9 133 63.9
AUR62016115 Chenopodium quinoa HOM05D005662 ORTHO05D007004 1.5e-42 177.2 234 45.7
Sabra15G0143400 Salix brachista HOM05D005662 ORTHO05D007004 7.3e-42 174.9 181 51.9
Mapoly0005s0155 Marchantia polymorpha HOM05D005662 ORTHO05D007004 1.4e-40 170.6 227 42.7
Sc13g0007790 Simmondsia chinensis HOM05D005662 ORTHO05D007004 7.6e-39 164.9 140 64.3
CAN.G152.22 Capsicum annuum HOM05D005662 ORTHO05D007004 9.9e-39 164.5 135 61.5
Pp3c5_5760 Physcomitrium patens HOM05D005662 ORTHO05D007004 9.9e-39 164.5 238 43.3
Pp3c16_14910 Physcomitrium patens HOM05D005662 ORTHO05D007004 3.8e-38 162.5 233 40.8
Cpa.g.sc130.1 Carica papaya HOM05D005662 ORTHO05D007004 1.1e-37 161.0 93 79.6
Lsat_1_v5_gn_9_52481 Lactuca sativa HOM05D005662 ORTHO05D007004 1.0e-35 154.5 215 44.7
CBR_g40194 Chara braunii HOM05D005662 ORTHO05D007004 4.3e-34 149.1 236 41.1
BcaC03g18141 Brassica carinata HOM05D000207 ORTHO05D001482 4.5e-31 139.0 128 58.6
Ah.13g067320 Amaranthus hybridus HOM05D005662 ORTHO05D007004 2.4e-29 133.3 95 64.2
DCAR_018618 Daucus carota HOM05D005662 ORTHO05D007004 2.1e-28 130.2 136 51.5
Ah.13g067330 Amaranthus hybridus HOM05D005662 ORTHO05D007004 1.1e-26 124.4 99 62.6
AUR62035061 Chenopodium quinoa HOM05D005662 ORTHO05D007004 7.4e-26 121.7 98 61.2
AagrBONN_evm.TU.Sc2ySwM_368.1564 Anthoceros agrestis HOM05D005662 ORTHO05D007004 1.3e-25 120.9 142 47.9
Ciclev10006356m.g Citrus clementina HOM05D005662 ORTHO05D007004 6.4e-22 108.6 79 68.4
PRCOL_00002770 Prasinoderma coloniale HOM05D005662 ORTHO05D007004 7.9e-20 101.7 149 40.9
Thecc.03G160100 Theobroma cacao HOM05D005662 ORTHO05D007004 2.3e-19 100.1 132 48.5
DCAR_021652 Daucus carota HOM05D000949 ORTHO05D001276 8.7e-19 98.2 112 50.0
COL.COLO4_29300 Corchorus olitorius HOM05D005662 ORTHO05D007004 5.6e-18 95.5 108 50.0
arahy.Tifrunner.gnm1.ann1.6UH5I2 Arachis hypogaea HOM05D005662 ORTHO05D007004 2.8e-17 93.2 132 43.9
DCAR_023430 Daucus carota HOM05D005662 ORTHO05D004064 1.1e-16 91.3 81 58.0
Cre12.g538150 Chlamydomonas reinhardtii HOM05D005662 ORTHO05D007004 1.4e-16 90.9 212 31.1
Solyc06g011630.1 Solanum lycopersicum HOM05D005662 ORTHO05D007004 2.9e-14 83.2 55 65.5
MCO15G129 Micromonas commoda HOM05D005662 ORTHO05D007004 3.2e-13 79.7 187 29.4
FvH4_3g21360 Fragaria vesca HOM05D005731 ORTHO05D012104 1.0e-11 74.7 86 52.3
DCAR_026119 Daucus carota HOM05D000323 ORTHO05D000201 5.1e-11 72.4 101 43.6
arahy.Tifrunner.gnm1.ann1.8PDC51 Arachis hypogaea HOM05D005662 ORTHO05D007004 1.6e-09 67.4 100 44.0


User provided reference genes

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