Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015299 Camellia sinensis var. sinensis HOM05D004272 ORTHO05D005020 2.3e-201 705.3 348 100.0
Actinidia02597 Actinidia chinensis HOM05D004272 ORTHO05D005020 1.3e-151 540.0 344 77.9
Dinv12903 Davidia involucrata HOM05D004272 ORTHO05D005020 3.2e-150 535.4 342 77.2
GSVIVG01034890001 Vitis vinifera HOM05D004272 ORTHO05D005020 3.2e-150 535.4 338 77.2
Rhsim06G0099300 Rhododendron simsii HOM05D004272 ORTHO05D005020 1.4e-148 530.0 376 71.8
QL02p034274 Quercus lobata HOM05D004272 ORTHO05D005020 1.4e-145 520.0 319 77.1
Rhsim11G0061700 Rhododendron simsii HOM05D004272 ORTHO05D005020 3.8e-143 511.9 369 71.5
Rhsim11G0063200 Rhododendron simsii HOM05D004272 ORTHO05D005020 3.8e-143 511.9 369 71.5
CiPaw.16G063800 Carya illinoinensis HOM05D004272 ORTHO05D005020 8.5e-143 510.8 321 75.1
Manes.18G099100 Manihot esculenta HOM05D004272 ORTHO05D005020 8.5e-143 510.8 342 71.3
CiPaw.15G083400 Carya illinoinensis HOM05D004272 ORTHO05D005020 3.2e-142 508.8 335 73.7
Cc00_g04120 Coffea canephora HOM05D004272 ORTHO05D005020 3.2e-142 508.8 346 74.3
Eucgr.F04145 Eucalyptus grandis HOM05D004272 ORTHO05D005020 5.5e-142 508.1 346 71.1
Ciclev10001727m.g Citrus clementina HOM05D004272 ORTHO05D005020 3.6e-141 505.4 346 72.0
Sabra13G0097600 Salix brachista HOM05D004272 ORTHO05D005020 1.4e-140 503.4 342 69.6
MD10G1045300 Malus domestica HOM05D004272 ORTHO05D005020 5.1e-140 501.5 335 71.3
Prupe.8G052200 Prunus persica HOM05D004272 ORTHO05D005020 2.6e-139 499.2 328 73.2
Potri.013G115400 Populus trichocarpa HOM05D004272 ORTHO05D005020 3.3e-139 498.8 342 69.6
Hma1.2p1_0510F.1_g168790 Hydrangea macrophylla HOM05D004272 ORTHO05D005020 2.2e-138 496.1 321 76.0
Gohir.A09G116800 Gossypium hirsutum HOM05D004272 ORTHO05D005020 6.3e-138 494.6 343 67.6
Thecc.08G200200 Theobroma cacao HOM05D004272 ORTHO05D005020 1.1e-137 493.8 338 69.2
Cpa.g.sc64.134 Carica papaya HOM05D004272 ORTHO05D005020 1.8e-137 493.0 342 70.5
Nitab4.5_0006059g0040 Nicotiana tabacum HOM05D004272 ORTHO05D005020 2.4e-137 492.7 342 71.9
FvH4_2g12360 Fragaria vesca HOM05D004272 ORTHO05D005020 4.1e-137 491.9 326 72.1
FAN24G2414 Fragaria x ananassa HOM05D004272 ORTHO05D005020 4.1e-137 491.9 326 72.1
Peaxi162Scf00268g01426 Petunia axillaris HOM05D004272 ORTHO05D005020 4.1e-137 491.9 337 71.5
THA.LOC104800104 Tarenaya hassleriana HOM05D004272 ORTHO05D005020 5.3e-137 491.5 334 70.1
Oeu030010.1 Olea europaea HOM05D004272 ORTHO05D005020 9.1e-137 490.7 334 73.7
Gohir.D09G113700 Gossypium hirsutum HOM05D004272 ORTHO05D005020 1.2e-136 490.3 343 67.3
CANSAT25G2208 Cannabis sativa HOM05D004272 ORTHO05D005020 2.0e-136 489.6 311 72.0
FAN20G0830 Fragaria x ananassa HOM05D004272 ORTHO05D005020 2.0e-136 489.6 321 73.2
Gorai.006G131400 Gossypium raimondii HOM05D004272 ORTHO05D005020 2.6e-136 489.2 327 69.1
FAN27G2909 Fragaria x ananassa HOM05D004272 ORTHO05D005020 5.9e-136 488.0 321 72.6
Sopen11g008950 Solanum pennellii HOM05D004272 ORTHO05D005020 7.7e-136 487.6 351 70.4
Atru.chr13.1851 Acer truncatum HOM05D004272 ORTHO05D005020 3.8e-135 485.3 384 63.3
Solyc11g016990.3 Solanum lycopersicum HOM05D004272 ORTHO05D005020 8.5e-135 484.2 350 69.7
Oeu004773.1 Olea europaea HOM05D004272 ORTHO05D005020 1.5e-134 483.4 359 69.4
Haze_17897 Corylus avellana HOM05D004272 ORTHO05D005020 1.9e-134 483.0 391 62.9
Sp5g26920 Schrenkiella parvula HOM05D004272 ORTHO05D005020 3.2e-134 482.3 339 69.9
SpUn0020_0060 Schrenkiella parvula HOM05D004272 ORTHO05D005020 3.2e-134 482.3 339 69.9
VMungo0720G1438 Vigna mungo HOM05D004272 ORTHO05D005020 5.5e-134 481.5 323 68.7
RcHm_v2.0_Chr6g0272381 Rosa chinensis HOM05D004272 ORTHO05D005020 9.4e-134 480.7 327 70.9
vmacro12508 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 2.7e-133 479.2 318 74.8
MELO3C018159.2 Cucumis melo HOM05D004272 ORTHO05D005020 1.0e-132 477.2 328 69.5
arahy.Tifrunner.gnm1.ann1.CBRY2G Arachis hypogaea HOM05D004272 ORTHO05D005020 8.8e-132 474.2 345 66.4
Phvul.007G087900 Phaseolus vulgaris HOM05D004272 ORTHO05D005020 1.5e-131 473.4 332 67.8
arahy.Tifrunner.gnm1.ann1.6Q1IL7 Arachis hypogaea HOM05D004272 ORTHO05D005020 2.0e-131 473.0 338 67.5
AL2G31440 Arabidopsis lyrata HOM05D004272 ORTHO05D005020 7.5e-131 471.1 310 71.6
Sc01g0001660 Simmondsia chinensis HOM05D004272 ORTHO05D005020 7.5e-131 471.1 329 69.9
AT1G71860 Arabidopsis thaliana HOM05D004272 ORTHO05D005020 1.3e-130 470.3 310 72.3
Aa31LG4G8760 Aethionema arabicum HOM05D004272 ORTHO05D005020 3.7e-130 468.8 334 68.0
Duzib116G0407 Durio zibethinus HOM05D004272 ORTHO05D005020 3.7e-130 468.8 387 60.7
Carub.0002s1862 Capsella rubella HOM05D004272 ORTHO05D005020 6.3e-130 468.0 310 70.6
Glyma.10G218100 Glycine max HOM05D004272 ORTHO05D005020 6.3e-130 468.0 333 67.9
Glyma.20G173700 Glycine max HOM05D004272 ORTHO05D005020 1.4e-129 466.8 333 68.2
Sopen06g023970 Solanum pennellii HOM05D004272 ORTHO05D005020 1.4e-129 466.8 331 70.7
CsaV3_7G024250 Cucumis sativus L. HOM05D004272 ORTHO05D005020 1.8e-129 466.5 314 70.4
Solyc06g065480.4 Solanum lycopersicum HOM05D004272 ORTHO05D005020 2.4e-129 466.1 336 69.9
Thhalv10018624m.g Eutrema salsugineum HOM05D004272 ORTHO05D005020 3.1e-129 465.7 344 66.3
Medtr1g096990 Medicago truncatula HOM05D004272 ORTHO05D005020 3.1e-129 465.7 326 67.8
Sed0022323 Sechium edule HOM05D004272 ORTHO05D005020 4.1e-129 465.3 334 68.0
Migut.N03339 Erythranthe guttata HOM05D004272 ORTHO05D005020 7.0e-129 464.5 316 71.8
Ca_10628_v3 Cicer arietinum L. HOM05D004272 ORTHO05D005020 9.1e-129 464.2 329 68.1
Lj5g0022070 Lotus japonicus HOM05D004272 ORTHO05D005020 1.2e-128 463.8 330 67.9
SalBow6G4901 Salvia bowleyana HOM05D004272 ORTHO05D005020 2.0e-128 463.0 351 67.5
MD05G1039700 Malus domestica HOM05D004272 ORTHO05D005020 1.0e-127 460.7 329 69.6
TPR.G15693 Trifolium pratense HOM05D004272 ORTHO05D005020 1.3e-127 460.3 336 66.7
SalBow6G0059 Salvia bowleyana HOM05D004272 ORTHO05D005020 1.5e-126 456.8 340 69.1
Hund27072 Selenicereus undatus HOM05D004272 ORTHO05D005020 4.2e-126 455.3 326 67.8
TAR381G1009 Trochodendron aralioides HOM05D004272 ORTHO05D005020 5.5e-126 454.9 332 70.2
BcaC08g46618 Brassica carinata HOM05D004272 ORTHO05D005020 2.1e-125 453.0 314 70.4
Lj7C302G8 Lonicera japonica HOM05D004272 ORTHO05D005020 4.7e-125 451.8 386 60.6
Lalb_Chr06g0161911 Lupinus albus HOM05D004272 ORTHO05D005020 8.0e-125 451.1 323 65.9
BcaC08g46620 Brassica carinata HOM05D004272 ORTHO05D005020 1.8e-124 449.9 324 69.1
BolC6t39646H Brassica oleracea HOM05D004272 ORTHO05D005020 1.8e-124 449.9 324 69.1
C06p45930 Brassica napus HOM05D004272 ORTHO05D005020 4.0e-124 448.7 324 69.1
HanXRQChr13g0388201 Helianthus annuus HOM05D004272 ORTHO05D005020 5.2e-124 448.4 320 68.8
Nitab4.5_0000159g0070 Nicotiana tabacum HOM05D004272 ORTHO05D005020 5.2e-124 448.4 277 78.0
BraA07t31367Z Brassica rapa HOM05D004272 ORTHO05D005020 8.8e-124 447.6 314 69.7
A07p38020 Brassica napus HOM05D004272 ORTHO05D005020 1.5e-123 446.8 314 69.4
Nitab4.5_0003518g0050 Nicotiana tabacum HOM05D004272 ORTHO05D005020 4.8e-122 441.8 287 76.0
Lsat_1_v5_gn_5_157280 Lactuca sativa HOM05D004272 ORTHO05D005020 4.5e-120 435.3 349 63.6
CAN.G199.25 Capsicum annuum HOM05D004272 ORTHO05D005020 7.7e-120 434.5 268 78.0
PSO170G2262 Papaver somniferum HOM05D004272 ORTHO05D005020 7.7e-120 434.5 342 64.0
Aqoxy6G00139 Aquilegia oxysepala HOM05D004272 ORTHO05D005020 1.5e-118 430.3 344 63.1
DCAR_010068 Daucus carota HOM05D004272 ORTHO05D005020 1.5e-118 430.3 317 65.9
EL10Ac1g00062 Beta vulgaris HOM05D004272 ORTHO05D005020 2.3e-116 422.9 321 65.1
Migut.C01228 Erythranthe guttata HOM05D004272 ORTHO05D005020 3.4e-115 419.1 301 67.8
CARHR289070 Cardamine hirsuta HOM05D004272 ORTHO05D005020 5.7e-115 418.3 262 73.3
ClCG09G010370 Citrullus lanatus HOM05D004272 ORTHO05D005020 9.2e-113 411.0 301 67.4
AUR62004668 Chenopodium quinoa HOM05D004272 ORTHO05D005020 1.0e-111 407.5 259 73.4
CAN.G61.12 Capsicum annuum HOM05D004272 ORTHO05D005020 1.7e-111 406.8 252 77.0
ATR0687G002 Amborella trichopoda HOM05D004272 ORTHO05D005020 8.6e-111 404.4 333 59.2
unitig_61.g26072 Utricularia gibba HOM05D004272 ORTHO05D005020 3.4e-107 392.5 338 59.8
AUR62023587 Chenopodium quinoa HOM05D004272 ORTHO05D005020 2.2e-106 389.8 251 72.1
PSO782G4024 Papaver somniferum HOM05D004272 ORTHO05D005020 3.5e-104 382.5 339 58.1
Hund16809 Selenicereus undatus HOM05D004272 ORTHO05D005020 4.6e-104 382.1 321 59.5
TWI60G0092 Tripterygium wilfordii HOM05D004272 ORTHO05D005020 1.3e-103 380.6 328 58.8
vmacro00781 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 1.3e-103 380.6 390 54.6
Nn5g27830 Nelumbo nucifera HOM05D004272 ORTHO05D005020 1.2e-101 374.0 344 56.4
SGA_v2.0_scaffold149G36610 Striga asiatica HOM05D004272 ORTHO05D005020 6.2e-101 371.7 431 50.1
PSO170G2167 Papaver somniferum HOM05D004272 ORTHO05D005020 4.0e-100 369.0 307 59.3
HPP92_003132 Vanilla planifolia HOM05D004272 ORTHO05D005020 7.5e-99 364.8 313 56.5
MELO3C023674.2 Cucumis melo HOM05D004272 ORTHO05D005020 1.3e-98 364.0 247 68.0
Manes.02G190000 Manihot esculenta HOM05D004272 ORTHO05D005020 2.9e-98 362.8 211 77.3
RcHm_v2.0_Chr3g0456471 Rosa chinensis HOM05D004272 ORTHO05D005020 4.9e-98 362.1 321 59.8
DCAR_014268 Daucus carota HOM05D004272 ORTHO05D005020 2.4e-97 359.8 321 54.5
HanXRQChr13g0388211 Helianthus annuus HOM05D004272 ORTHO05D005020 1.6e-96 357.1 300 60.0
Hund16808 Selenicereus undatus HOM05D004272 ORTHO05D005020 1.6e-96 357.1 312 58.0
RcHm_v2.0_Chr7g0181531 Rosa chinensis HOM05D004272 ORTHO05D005020 3.3e-94 349.4 333 58.6
ECA248G3752 Erigeron canadensis HOM05D004272 ORTHO05D005020 3.6e-93 345.9 324 56.8
Psat6g189360 Pisum sativum HOM05D004272 ORTHO05D005020 4.0e-92 342.4 263 62.7
Nitab4.5_0029014g0010 Nicotiana tabacum HOM05D004272 ORTHO05D005020 5.2e-92 342.0 280 63.9
MD09G1287400 Malus domestica HOM05D004272 ORTHO05D005020 1.5e-91 340.5 329 57.1
FvH4_5g14850 Fragaria vesca HOM05D004272 ORTHO05D005020 2.0e-91 340.1 326 58.0
FAN18G3209 Fragaria x ananassa HOM05D004272 ORTHO05D005020 3.4e-91 339.3 337 56.7
arahy.Tifrunner.gnm1.ann1.E3548W Arachis hypogaea HOM05D004272 ORTHO05D005020 6.4e-90 335.1 333 55.0
FAN08G2250 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.1e-89 334.3 337 55.5
FAN13G2363 Fragaria x ananassa HOM05D004272 ORTHO05D005020 9.2e-89 331.3 339 55.5
Ah.05g177840 Amaranthus hybridus HOM05D004272 ORTHO05D005020 3.9e-87 325.9 313 54.6
Prupe.1G402600 Prunus persica HOM05D004272 ORTHO05D005020 2.3e-84 316.6 353 52.7
ECA248G0749 Erigeron canadensis HOM05D004272 ORTHO05D005020 6.4e-82 308.5 280 56.1
SHI09047 Sapria himalayana HOM05D004272 ORTHO05D005020 5.1e-79 298.9 307 50.2
Pp3c13_6130 Physcomitrium patens HOM05D004272 ORTHO05D005020 4.0e-68 262.7 319 43.6
Pp3c3_2290 Physcomitrium patens HOM05D004272 ORTHO05D005020 2.1e-61 240.4 319 41.4
Os12g0174800 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 3.6e-61 239.6 306 43.1
Mapoly0167s0026 Marchantia polymorpha HOM05D004272 ORTHO05D005020 1.5e-59 234.2 337 41.2
Os11g0180200 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 1.5e-59 234.2 239 53.1
SGA_v2.0_scaffold483G52343 Striga asiatica HOM05D004272 ORTHO05D005020 2.0e-59 233.8 155 72.3
SMO347G0125 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 7.6e-59 231.9 298 41.9
PGSC0003DMG400024543 Solanum tuberosum HOM05D004272 ORTHO05D005020 6.4e-58 228.8 151 73.5
Potri.019G086001 Populus trichocarpa HOM05D004272 ORTHO05D005020 1.8e-55 220.7 135 72.6
Dinv41680 Davidia involucrata HOM05D004272 ORTHO05D005020 2.4e-52 210.3 113 85.0
AagrBONN_evm.TU.Sc2ySwM_228.1486 Anthoceros agrestis HOM05D004272 ORTHO05D005020 1.3e-47 194.5 252 41.3
Zm00001eb091350 Zea mays HOM05D004272 ORTHO05D005020 3.0e-47 193.4 330 39.4
CDE12G0366 Ceratophyllum demersum HOM05D004272 ORTHO05D005020 3.9e-47 193.0 247 42.1
SEGI_33079 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 1.5e-46 191.0 160 56.2
CBR_g17924 Chara braunii HOM05D004272 ORTHO05D005020 4.3e-46 189.5 210 42.4
Cre12.g524450 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 5.3e-44 182.6 301 37.2
CBR_g49956 Chara braunii HOM05D004272 ORTHO05D005020 1.3e-37 161.4 225 40.9
Zm00001eb138930 Zea mays HOM05D004272 ORTHO05D005020 6.3e-37 159.1 247 40.5
TPR.G15698 Trifolium pratense HOM05D004272 ORTHO05D005020 4.2e-33 146.4 88 75.0
Haze_26549 Corylus avellana HOM05D004272 ORTHO05D005020 3.0e-31 140.2 255 35.3
Haze_26606 Corylus avellana HOM05D004272 ORTHO05D005020 2.6e-30 137.1 243 34.2
Cre09.g389949 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 5.3e-28 129.4 406 26.8
SGA_v2.0_scaffold1053G53812 Striga asiatica HOM05D004272 ORTHO05D005020 3.2e-25 120.2 65 87.7
SGA_v2.0_scaffold322G48619 Striga asiatica HOM05D004272 ORTHO05D005020 3.2e-25 120.2 65 87.7
SMO166G0076 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 4.2e-25 119.8 262 29.4
SGA_v2.0_scaffold386G50488 Striga asiatica HOM05D004272 ORTHO05D005020 7.2e-25 119.0 65 86.2
SEGI_21150 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 3.0e-23 113.6 84 65.5
SMO119G0089 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 3.9e-23 113.2 220 31.8
PRCOL_00003935 Prasinoderma coloniale HOM05D004272 ORTHO05D005020 4.4e-22 109.8 310 29.4
PSO170G3665 Papaver somniferum HOM05D004272 ORTHO05D005020 6.3e-21 105.9 212 33.5
SMO351G0156 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.1e-20 105.1 153 38.6
SMO115G0188 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 4.1e-20 103.2 169 33.7
CBR_g53623 Chara braunii HOM05D004272 ORTHO05D005020 2.6e-19 100.5 105 39.0
CBR_g53619 Chara braunii HOM05D004272 ORTHO05D005020 3.5e-19 100.1 113 38.9
Cfa026335 Carpinus fangiana HOM05D003314 ORTHO05D004164 1.5e-17 94.7 262 26.3
Cfa022797 Carpinus fangiana HOM05D004272 ORTHO05D005020 1.8e-15 87.8 291 24.7
Glyma.20G173900 Glycine max HOM05D004272 ORTHO05D005020 2.6e-14 84.0 60 61.7
Glyma.20G173800 Glycine max HOM05D004272 ORTHO05D005020 1.8e-12 77.8 109 43.1
Psat6g014560 Pisum sativum HOM05D004272 ORTHO05D005020 2.0e-11 74.3 88 48.9
CARHR290880 Cardamine hirsuta HOM05D004272 ORTHO05D005020 1.3e-10 71.6 89 47.2


User provided reference genes

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