Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002878 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 8.3e-168 593.6 289 100.0
CSS0015264 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 8.3e-168 593.6 289 100.0
CSS0013759 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 2.6e-161 572.0 289 97.2
Actinidia27975 Actinidia chinensis HOM05D004481 ORTHO05D005350 1.4e-138 496.5 291 82.8
Rhsim11G0156300 Rhododendron simsii HOM05D004481 ORTHO05D005350 4.6e-134 481.5 288 80.2
TAR376G0836 Trochodendron aralioides HOM05D004481 ORTHO05D005350 4.6e-134 481.5 291 80.1
GSVIVG01037896001 Vitis vinifera HOM05D004481 ORTHO05D005350 3.9e-133 478.4 286 81.1
TAR628G0287 Trochodendron aralioides HOM05D004481 ORTHO05D005350 1.5e-132 476.5 289 79.2
Gohir.A12G021100 Gossypium hirsutum HOM05D004481 ORTHO05D005350 3.1e-130 468.8 292 77.1
CiPaw.06G168400 Carya illinoinensis HOM05D004481 ORTHO05D005350 2.0e-129 466.1 291 78.7
Gohir.D12G021400 Gossypium hirsutum HOM05D004481 ORTHO05D005350 2.0e-129 466.1 292 76.0
Gorai.008G021700 Gossypium raimondii HOM05D004481 ORTHO05D005350 2.0e-129 466.1 292 76.0
CSS0003948 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 2.6e-129 465.7 291 77.0
Nn1g04655 Nelumbo nucifera HOM05D004481 ORTHO05D005350 5.8e-129 464.5 292 75.7
Hma1.2p1_1023F.1_g248990 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 3.2e-127 458.8 291 77.0
Thecc.02G111500 Theobroma cacao HOM05D004481 ORTHO05D005350 2.1e-126 456.1 289 74.4
Prupe.8G137600 Prunus persica HOM05D004481 ORTHO05D005350 1.0e-125 453.8 291 74.6
Ciclev10028970m.g Citrus clementina HOM05D004481 ORTHO05D005350 1.3e-125 453.4 291 74.6
Lj5A215G63 Lonicera japonica HOM05D004481 ORTHO05D005350 1.3e-125 453.4 328 70.4
Duzib052G1089 Durio zibethinus HOM05D004481 ORTHO05D005350 2.3e-125 452.6 291 74.2
Cc02_g19430 Coffea canephora HOM05D004481 ORTHO05D005350 3.9e-125 451.8 291 76.6
MD10G1100100 Malus domestica HOM05D004481 ORTHO05D005350 1.1e-124 450.3 292 75.0
Nn5g30459 Nelumbo nucifera HOM05D004481 ORTHO05D005350 1.9e-124 449.5 288 75.3
FAN24G0473 Fragaria x ananassa HOM05D004481 ORTHO05D005350 3.3e-124 448.7 291 73.5
Atru.chr5.2445 Acer truncatum HOM05D004481 ORTHO05D005350 1.2e-123 446.8 291 73.5
Sabra09G0071800 Salix brachista HOM05D004481 ORTHO05D005350 1.2e-123 446.8 291 74.2
Cpa.g.sc106.118 Carica papaya HOM05D004481 ORTHO05D005350 2.1e-123 446.0 290 75.2
CANSAT25G3441 Cannabis sativa HOM05D004481 ORTHO05D005350 2.8e-123 445.7 291 74.6
CAN.G606.21 Capsicum annuum HOM05D004481 ORTHO05D005350 2.8e-123 445.7 286 75.2
CsaV3_7G008050 Cucumis sativus L. HOM05D004481 ORTHO05D005350 8.1e-123 444.1 292 73.3
FvH4_2g04780 Fragaria vesca HOM05D004481 ORTHO05D005350 8.1e-123 444.1 285 74.4
Potri.001G298500 Populus trichocarpa HOM05D004481 ORTHO05D005350 8.1e-123 444.1 291 73.5
vmacro01990 Vaccinium macrocarpon HOM05D004481 ORTHO05D005350 8.1e-123 444.1 293 74.4
Nitab4.5_0001480g0100 Nicotiana tabacum HOM05D004481 ORTHO05D005350 1.1e-122 443.7 286 75.2
PGSC0003DMG400025761 Solanum tuberosum HOM05D004481 ORTHO05D005350 1.8e-122 443.0 286 75.5
TWI79G1728 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 2.4e-122 442.6 289 73.0
Sc18g0005550 Simmondsia chinensis HOM05D004481 ORTHO05D005350 3.1e-122 442.2 291 75.3
CANSAT25G2190 Cannabis sativa HOM05D004481 ORTHO05D005350 4.0e-122 441.8 291 73.9
RcHm_v2.0_Chr6g0254491 Rosa chinensis HOM05D004481 ORTHO05D005350 5.3e-122 441.4 291 72.2
Potri.009G093200 Populus trichocarpa HOM05D004481 ORTHO05D005350 9.0e-122 440.7 291 73.2
Glyma.20G130700 Glycine max HOM05D004481 ORTHO05D005350 1.5e-121 439.9 287 74.2
AUR62010332 Chenopodium quinoa HOM05D004481 ORTHO05D005350 3.4e-121 438.7 284 72.9
ClCG02G006560 Citrullus lanatus HOM05D004481 ORTHO05D005350 4.4e-121 438.3 302 72.5
Nitab4.5_0003699g0050 Nicotiana tabacum HOM05D004481 ORTHO05D005350 4.4e-121 438.3 297 72.4
MELO3C018500.2 Cucumis melo HOM05D004481 ORTHO05D005350 9.9e-121 437.2 292 74.0
Sed0018810 Sechium edule HOM05D004481 ORTHO05D005350 9.9e-121 437.2 290 74.1
FAN27G3202 Fragaria x ananassa HOM05D004481 ORTHO05D005350 1.3e-120 436.8 285 73.0
Nitab4.5_0002647g0020 Nicotiana tabacum HOM05D004481 ORTHO05D005350 1.3e-120 436.8 286 73.4
arahy.Tifrunner.gnm1.ann1.5RC8JY Arachis hypogaea HOM05D004481 ORTHO05D005350 2.9e-120 435.6 287 73.2
Eucgr.I01088 Eucalyptus grandis HOM05D004481 ORTHO05D005350 3.8e-120 435.3 291 72.5
Solyc10g049850.3 Solanum lycopersicum HOM05D004481 ORTHO05D005350 3.8e-120 435.3 286 73.4
PGR142G4205 Punica granatum HOM05D004481 ORTHO05D005350 4.9e-120 434.9 289 72.3
HanXRQChr04g0105981 Helianthus annuus HOM05D004481 ORTHO05D005350 8.4e-120 434.1 291 71.8
Oeu037260.1 Olea europaea HOM05D004481 ORTHO05D005350 1.1e-119 433.7 286 74.5
TPR.G27083 Trifolium pratense HOM05D004481 ORTHO05D005350 2.4e-119 432.6 287 72.8
TWI75G0922 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 3.2e-119 432.2 289 72.3
PSO210G1902 Papaver somniferum HOM05D004481 ORTHO05D005350 5.4e-119 431.4 291 71.1
THA.LOC104807234 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 7.1e-119 431.0 288 73.3
THA.LOC104819549 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 9.3e-119 430.6 291 71.8
Migut.B00402 Erythranthe guttata HOM05D004481 ORTHO05D005350 1.2e-118 430.3 284 73.9
Psat6g216600 Pisum sativum HOM05D004481 ORTHO05D005350 1.2e-118 430.3 285 73.0
SGA_v2.0_scaffold225G42995 Striga asiatica HOM05D004481 ORTHO05D005350 2.1e-118 429.5 286 73.1
Manes.07G066500 Manihot esculenta HOM05D004481 ORTHO05D005350 3.5e-118 428.7 292 72.6
PSO170G4403 Papaver somniferum HOM05D004481 ORTHO05D005350 3.5e-118 428.7 292 71.2
Medtr1g107045 Medicago truncatula HOM05D004481 ORTHO05D005350 4.6e-118 428.3 287 71.8
Aqoxy5G01130 Aquilegia oxysepala HOM05D004481 ORTHO05D005350 1.0e-117 427.2 286 72.4
Lj5g0012751 Lotus japonicus HOM05D004481 ORTHO05D005350 1.0e-117 427.2 292 71.6
Peaxi162Scf00016g02527 Petunia axillaris HOM05D004481 ORTHO05D005350 2.3e-117 426.0 324 66.4
Ca_11058_v3 Cicer arietinum L. HOM05D004481 ORTHO05D005350 3.0e-117 425.6 287 72.1
Phvul.007G041700 Phaseolus vulgaris HOM05D004481 ORTHO05D005350 3.9e-117 425.2 286 71.7
VMungo0720G1503 Vigna mungo HOM05D004481 ORTHO05D005350 3.9e-117 425.2 287 70.7
Glyma.10G260500 Glycine max HOM05D004481 ORTHO05D005350 5.1e-117 424.9 289 72.0
Sp7g32060 Schrenkiella parvula HOM05D004481 ORTHO05D005350 5.1e-117 424.9 287 71.4
MSTRG.20195 Avicennia marina HOM05D004481 ORTHO05D005350 6.6e-117 424.5 286 71.7
Lalb_Chr02g0145211 Lupinus albus HOM05D004481 ORTHO05D005350 1.5e-116 423.3 289 71.3
Rhsim11G0157800 Rhododendron simsii HOM05D004481 ORTHO05D005350 1.9e-116 422.9 288 73.6
Dinv42206 Davidia involucrata HOM05D002228 ORTHO05D005350 4.3e-116 421.8 243 82.3
Lalb_Chr21g0308241 Lupinus albus HOM05D004481 ORTHO05D005350 1.3e-115 420.2 289 72.0
Sed0023236 Sechium edule HOM05D004481 ORTHO05D005350 1.3e-115 420.2 300 69.7
Carub.0007s0609 Capsella rubella HOM05D004481 ORTHO05D005350 4.8e-115 418.3 287 69.7
BcaNung04989 Brassica carinata HOM05D004481 ORTHO05D005350 6.2e-115 417.9 287 70.4
ECA234G2632 Erigeron canadensis HOM05D004481 ORTHO05D005350 6.2e-115 417.9 291 70.1
BolC1t00437H Brassica oleracea HOM05D004481 ORTHO05D005350 1.4e-114 416.8 287 70.4
A01p04140 Brassica napus HOM05D004481 ORTHO05D005350 6.9e-114 414.5 287 70.0
Thhalv10025895m.g Eutrema salsugineum HOM05D004481 ORTHO05D005350 6.9e-114 414.5 288 70.5
CARHR242510 Cardamine hirsuta HOM05D004481 ORTHO05D005350 1.5e-113 413.3 287 70.4
AL7G17000 Arabidopsis lyrata HOM05D004481 ORTHO05D005350 2.0e-113 412.9 287 68.3
C01p04510 Brassica napus HOM05D004481 ORTHO05D005350 2.6e-113 412.5 287 70.0
Aa31LG2G16850 Aethionema arabicum HOM05D004481 ORTHO05D005350 7.6e-113 411.0 291 69.1
AT4G34270 Arabidopsis thaliana HOM05D004481 ORTHO05D005350 7.6e-113 411.0 291 67.4
Hund06305 Selenicereus undatus HOM05D004481 ORTHO05D005350 4.9e-112 408.3 288 70.8
Cfa004607 Carpinus fangiana HOM05D004481 ORTHO05D005350 1.4e-111 406.8 255 77.6
DCAR_021976 Daucus carota HOM05D004481 ORTHO05D005350 2.4e-111 406.0 260 75.0
SalBow6G4388 Salvia bowleyana HOM05D004481 ORTHO05D005350 5.4e-111 404.8 324 63.9
SalBow6G4779 Salvia bowleyana HOM05D004481 ORTHO05D005350 5.4e-111 404.8 324 63.9
EL10Ac9g22252 Beta vulgaris HOM05D004481 ORTHO05D005350 1.6e-110 403.3 291 68.7
BraA01t00403Z Brassica rapa HOM05D004481 ORTHO05D005350 1.3e-109 400.2 303 66.7
unitig_0.g879 Utricularia gibba HOM05D004481 ORTHO05D005350 8.7e-109 397.5 288 68.4
Haze_10202 Corylus avellana HOM05D004481 ORTHO05D005350 7.4e-108 394.4 295 68.5
QL11p032653 Quercus lobata HOM05D004481 ORTHO05D005350 8.1e-107 391.0 254 74.8
PGSC0003DMG400023263 Solanum tuberosum HOM05D004481 ORTHO05D005350 2.6e-105 386.0 254 73.2
CDE02G3699 Ceratophyllum demersum HOM05D004481 ORTHO05D005350 7.6e-105 384.4 288 66.3
arahy.Tifrunner.gnm1.ann1.PGW4NS Arachis hypogaea HOM05D004481 ORTHO05D005350 1.7e-104 383.3 255 72.2
FAN15G0583 Fragaria x ananassa HOM05D004481 ORTHO05D005350 1.1e-103 380.6 291 65.6
Zm00001eb214380 Zea mays HOM05D004481 ORTHO05D005350 1.6e-102 376.7 281 65.5
Lsat_1_v5_gn_5_116421 Lactuca sativa HOM05D004481 ORTHO05D005350 2.3e-101 372.9 255 72.2
CiPaw.05G013400 Carya illinoinensis HOM05D004481 ORTHO05D005350 3.3e-100 369.0 232 76.3
Os03g0760600 Oryza sativa ssp. japonica HOM05D004481 ORTHO05D005350 3.3e-100 369.0 280 65.0
Hma1.2p1_1023F.1_g249000 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 6.7e-93 344.7 208 79.8
SEGI_10030 Sequoiadendron giganteum HOM05D004481 ORTHO05D005350 6.7e-93 344.7 285 60.4
Ah.01g010900 Amaranthus hybridus HOM05D004481 ORTHO05D005350 8.7e-93 344.4 290 60.3
FAN20G2321 Fragaria x ananassa HOM05D004481 ORTHO05D005350 1.6e-91 340.1 286 60.5
ATR0661G316 Amborella trichopoda HOM05D004481 ORTHO05D005350 3.7e-91 339.0 241 69.3
SHI05271 Sapria himalayana HOM05D004481 ORTHO05D005350 2.2e-88 329.7 258 63.6
Actinidia00401 Actinidia chinensis HOM05D004481 ORTHO05D005350 1.9e-87 326.6 228 73.2
AUR62039053 Chenopodium quinoa HOM05D004481 ORTHO05D005350 4.6e-86 322.0 284 58.1
Mapoly0064s0080 Marchantia polymorpha HOM05D004481 ORTHO05D005350 2.0e-84 316.6 291 54.6
Pp3c10_18670 Physcomitrium patens HOM05D004481 ORTHO05D005350 1.1e-82 310.8 283 53.7
SMO361G0327 Selaginella moellendorffii HOM05D004481 ORTHO05D005350 6.5e-80 301.6 292 55.8
AagrBONN_evm.TU.Sc2ySwM_228.2403 Anthoceros agrestis HOM05D004481 ORTHO05D005350 4.8e-75 285.4 237 59.9
Sopen10g019880 Solanum pennellii HOM05D004481 ORTHO05D005350 5.7e-68 261.9 170 72.9
HPP92_010143 Vanilla planifolia HOM05D004481 ORTHO05D005350 5.9e-65 251.9 192 65.6
BcaNung04162 Brassica carinata HOM05D004481 ORTHO05D005350 1.5e-55 220.7 299 45.5
MCO13G563 Micromonas commoda HOM05D004481 ORTHO05D005350 4.5e-49 199.1 263 41.8
CSS0037652 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 2.1e-46 190.3 153 63.4
MD00G1108700 Malus domestica HOM05D004481 ORTHO05D005350 1.5e-44 184.1 130 67.7
PRCOL_00000955 Prasinoderma coloniale HOM05D004481 ORTHO05D005350 2.2e-43 180.3 276 37.3
BolC3t17849H Brassica oleracea HOM05D004481 ORTHO05D005350 1.5e-36 157.5 151 55.0
BcaC01g03137 Brassica carinata HOM05D004481 ORTHO05D005350 4.9e-35 152.5 153 53.6
C03p55700 Brassica napus HOM05D004481 ORTHO05D005350 3.2e-34 149.8 151 53.6
BcaC08g44162 Brassica carinata HOM05D004481 ORTHO05D005350 3.3e-31 139.8 138 54.3
BcaNung04988 Brassica carinata HOM05D004481 ORTHO05D005350 2.0e-28 130.6 94 69.1
Cfa024874 Carpinus fangiana HOM05D004481 ORTHO05D005350 2.6e-28 130.2 265 30.9
CBR_g36716 Chara braunii HOM05D004481 ORTHO05D005350 1.3e-27 127.9 113 54.9
Cre17.g734150 Chlamydomonas reinhardtii HOM05D004481 ORTHO05D005350 2.2e-27 127.1 368 27.2
Peaxi162Scf00003g02548 Petunia axillaris HOM05D004481 ORTHO05D005350 1.1e-26 124.8 162 43.8
Sopen01g049660 Solanum pennellii HOM05D004481 ORTHO05D005350 9.2e-26 121.7 81 72.8
Actinidia34390 Actinidia chinensis HOM05D004481 ORTHO05D005350 7.8e-25 118.6 64 84.4
Sopen01g049670 Solanum pennellii HOM05D004481 ORTHO05D005350 4.3e-23 112.8 86 67.4
Hund00159 Selenicereus undatus HOM05D004481 ORTHO05D005350 9.5e-23 111.7 100 55.0
CSS0049178 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 5.2e-21 105.9 70 75.7
RcHm_v2.0_Chr6g0257521 Rosa chinensis HOM05D004481 ORTHO05D005350 5.2e-21 105.9 66 69.7
CSS0039068 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 1.2e-20 104.8 65 80.0
MD00G1108800 Malus domestica HOM05D004481 ORTHO05D005350 2.7e-17 93.6 144 41.7
Cfa005651 Carpinus fangiana HOM05D004481 ORTHO05D005350 1.5e-15 87.8 60 70.0
Atru.chr3.1909 Acer truncatum HOM05D004481 ORTHO05D005350 6.2e-14 82.4 92 48.9
Lsat_1_v5_gn_5_116621 Lactuca sativa HOM05D000552 ORTHO05D000469 8.1e-14 82.0 109 45.9
Solyc01g107420.2 Solanum lycopersicum HOM05D004481 ORTHO05D005350 8.1e-14 82.0 212 32.5
Atru.chr12.2105 Acer truncatum HOM05D004481 ORTHO05D005350 1.4e-13 81.3 90 47.8
GSVIVG01003443001 Vitis vinifera HOM05D004481 ORTHO05D005350 1.4e-13 81.3 61 60.7
GSVIVG01003244001 Vitis vinifera HOM05D004481 ORTHO05D005350 3.1e-13 80.1 46 76.1
GSVIVG01030751001 Vitis vinifera HOM05D004481 ORTHO05D005350 3.1e-13 80.1 46 76.1
Atru.chr13.2259 Acer truncatum HOM05D004481 ORTHO05D005350 4.0e-13 79.7 86 50.0
Atru.chr7.688 Acer truncatum HOM05D004481 ORTHO05D005350 4.0e-13 79.7 86 50.0
Cfa017289 Carpinus fangiana HOM05D004481 ORTHO05D005350 1.5e-12 77.8 56 66.1
GSVIVG01030757001 Vitis vinifera HOM05D004481 ORTHO05D005350 1.5e-12 77.8 46 71.7
PRCOL_00004768 Prasinoderma coloniale HOM05D004481 ORTHO05D005350 2.0e-12 77.4 188 30.3
VMungo0251G0056 Vigna mungo HOM05D005531 ORTHO05D006332 1.7e-11 74.3 122 41.0
Actinidia34391 Actinidia chinensis HOM05D004481 ORTHO05D005350 7.1e-10 68.9 48 66.7
Cfa002003 Carpinus fangiana HOM05D004481 ORTHO05D005350 1.7e-08 64.3 42 73.8
Cc02_g34080 Coffea canephora HOM05D004481 ORTHO05D005350 6.6e-08 62.4 47 63.8
Cc01_g02920 Coffea canephora HOM05D004481 ORTHO05D005350 2.5e-07 60.5 47 61.7


User provided reference genes

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