Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015259 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 7.5e-67 256.9 118 100.0
CSS0006887 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 1.2e-53 213.0 118 83.9
CSS0003221 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 1.4e-52 209.5 118 84.7
CSS0013543 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 3.2e-49 198.4 118 80.5
CSS0023820 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 1.0e-47 193.4 118 78.8
CSS0004806 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 3.0e-47 191.8 118 76.3
CSS0010240 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 3.0e-47 191.8 118 77.1
CSS0002147 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 8.6e-47 190.3 118 79.7
CSS0023038 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 2.8e-45 185.3 120 76.7
CSS0006571 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 7.6e-35 150.6 113 60.2
CSS0033855 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 9.9e-35 150.2 113 60.2
CSS0028555 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 7.1e-33 144.1 116 56.9
CSS0037267 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 4.6e-32 141.4 116 56.9
CSS0009299 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 6.0e-32 141.0 116 56.9
CSS0004654 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 7.8e-32 140.6 116 54.3
CSS0016602 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 1.0e-31 140.2 117 57.3
CSS0030203 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 4.3e-30 134.8 113 57.5
Actinidia22184 Actinidia chinensis HOM05D000455 ORTHO05D000434 3.6e-29 131.7 118 55.9
CSS0014323 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 2.4e-28 129.0 117 54.7
CSS0019902 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 6.9e-28 127.5 113 54.9
CSS0013856 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 1.3e-26 123.2 112 53.6
Atru.chr2.576 Acer truncatum HOM05D000593 ORTHO05D000562 1.2e-24 116.7 98 57.1
Atru.chr4.890 Acer truncatum HOM05D000593 ORTHO05D000562 1.2e-24 116.7 104 53.8
CANSAT64G1746 Cannabis sativa HOM05D000593 ORTHO05D002268 7.8e-24 114.0 114 47.4
CANSAT64G1841 Cannabis sativa HOM05D000593 ORTHO05D002268 7.8e-24 114.0 114 47.4
Hma1.2p1_0179F.1_g079060 Hydrangea macrophylla HOM05D000593 ORTHO05D000562 1.0e-23 113.6 95 57.9
CANSAT54G0060 Cannabis sativa HOM05D003216 ORTHO05D002268 1.7e-23 112.8 113 43.4
Atru.chr6.1396 Acer truncatum HOM05D000593 ORTHO05D000562 3.9e-23 111.7 99 54.5
MD10G1032900 Malus domestica HOM05D000593 ORTHO05D000562 5.1e-23 111.3 98 56.1
Hma1.2p1_0622F.1_g190870 Hydrangea macrophylla HOM05D000593 ORTHO05D000562 2.5e-22 109.0 95 56.8
MD05G1031400 Malus domestica HOM05D000593 ORTHO05D000562 2.5e-22 109.0 98 55.1
Hma1.2p1_1172F.1_g263670 Hydrangea macrophylla HOM05D000593 ORTHO05D002268 1.3e-21 106.7 95 54.7
Atru.chr1.3004 Acer truncatum HOM05D000593 ORTHO05D002268 2.8e-21 105.5 113 47.8
Atru.chr11.1014 Acer truncatum HOM05D000593 ORTHO05D000562 4.8e-21 104.8 113 46.9
Rhsim01G0176400 Rhododendron simsii HOM05D003216 ORTHO05D002268 8.1e-21 104.0 118 43.2
Rhsim06G0090900 Rhododendron simsii HOM05D003216 ORTHO05D002268 8.1e-21 104.0 118 43.2
TWI73G0339 Tripterygium wilfordii HOM05D000593 ORTHO05D000562 2.4e-20 102.4 113 46.0
CSS0005100 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 3.1e-20 102.1 113 48.7
RcHm_v2.0_Chr1g0329481 Rosa chinensis HOM05D000593 ORTHO05D000562 5.3e-20 101.3 98 50.0
TWI14G0423 Tripterygium wilfordii HOM05D000593 ORTHO05D000562 2.6e-19 99.0 97 47.4
FvH4_7g04391 Fragaria vesca HOM05D000593 ORTHO05D000562 3.4e-19 98.6 101 46.5
MD08G1164400 Malus domestica HOM05D000593 ORTHO05D000562 9.9e-19 97.1 109 42.2
RcHm_v2.0_Chr7g0206311 Rosa chinensis HOM05D000593 ORTHO05D000562 9.9e-19 97.1 121 46.3
Atru.chr11.19 Acer truncatum HOM05D000593 ORTHO05D000562 1.3e-18 96.7 99 47.5
Atru.chr11.22 Acer truncatum HOM05D000593 ORTHO05D000562 1.3e-18 96.7 99 47.5
TWI53G1229 Tripterygium wilfordii HOM05D000593 ORTHO05D002268 2.2e-18 95.9 98 44.9
Lj6A78T35 Lonicera japonica HOM05D000011 ORTHO05D002639 3.8e-18 95.1 108 43.5
TWI15G1236 Tripterygium wilfordii HOM05D000593 ORTHO05D000562 1.1e-17 93.6 98 43.9
RcHm_v2.0_Chr7g0206281 Rosa chinensis HOM05D000593 ORTHO05D002268 1.3e-15 86.7 79 53.2
TWI75G1234 Tripterygium wilfordii HOM05D000593 ORTHO05D000562 1.8e-15 86.3 115 37.4
TWI38G0345 Tripterygium wilfordii HOM05D000593 ORTHO05D000562 3.0e-15 85.5 98 41.8
TWI75G1634 Tripterygium wilfordii HOM05D003216 ORTHO05D002268 3.9e-15 85.1 114 34.2
Aqoxy1G00859 Aquilegia oxysepala HOM05D003216 ORTHO05D002268 5.1e-15 84.7 109 39.4
Aqoxy5G01684 Aquilegia oxysepala HOM05D000593 ORTHO05D000562 5.1e-15 84.7 109 39.4
CANSAT01G1396 Cannabis sativa HOM05D000593 ORTHO05D000562 6.7e-15 84.3 75 52.0
TWI38G0080 Tripterygium wilfordii HOM05D000593 ORTHO05D000562 6.7e-15 84.3 99 41.4
TWI73G0826 Tripterygium wilfordii HOM05D000593 ORTHO05D000562 1.5e-14 83.2 97 43.3
FvH4_4g16652 Fragaria vesca HOM05D000593 ORTHO05D000562 1.9e-14 82.8 116 36.2
TWI74G1657 Tripterygium wilfordii HOM05D000593 ORTHO05D002268 1.9e-14 82.8 97 43.3
TWI73G0077 Tripterygium wilfordii HOM05D000593 ORTHO05D002268 5.6e-14 81.3 99 39.4
TWI63G1264 Tripterygium wilfordii HOM05D000593 ORTHO05D000562 9.6e-14 80.5 116 34.5
Ca_05375_v3 Cicer arietinum L. HOM05D003216 ORTHO05D002268 1.3e-13 80.1 95 41.1
FvH4_5g13892 Fragaria vesca HOM05D000593 ORTHO05D002268 1.3e-13 80.1 103 43.7
TWI56G1292 Tripterygium wilfordii HOM05D000593 ORTHO05D002268 1.3e-13 80.1 116 34.5
TWI63G0793 Tripterygium wilfordii HOM05D000593 ORTHO05D000562 4.8e-13 78.2 116 33.6
TWI75G0671 Tripterygium wilfordii HOM05D000593 ORTHO05D000562 4.8e-13 78.2 116 33.6
FvH4_6g23211 Fragaria vesca HOM05D000045 ORTHO05D009940 6.2e-13 77.8 121 38.8
TWI31G0828 Tripterygium wilfordii HOM05D000593 ORTHO05D002268 8.1e-13 77.4 94 43.6
FvH4_6g12551 Fragaria vesca HOM05D000593 ORTHO05D002268 1.1e-12 77.0 115 39.1
FvH4_7g19111 Fragaria vesca HOM05D000593 ORTHO05D002268 1.4e-12 76.6 121 38.0
Phvul.008G000100 Phaseolus vulgaris HOM05D000593 ORTHO05D000562 1.4e-12 76.6 98 40.8
TWI15G0761 Tripterygium wilfordii HOM05D000593 ORTHO05D000562 1.8e-12 76.3 114 40.4
TWI59G1482 Tripterygium wilfordii HOM05D000593 ORTHO05D000562 1.8e-12 76.3 94 44.7
TWI23G0100 Tripterygium wilfordii HOM05D000593 ORTHO05D002268 4.0e-12 75.1 97 42.3
TWI31G0531 Tripterygium wilfordii HOM05D000593 ORTHO05D002268 4.0e-12 75.1 106 42.5
TWI12G0364 Tripterygium wilfordii HOM05D000593 ORTHO05D002268 5.3e-12 74.7 92 42.4
Ca_14497_v3 Cicer arietinum L. HOM05D003216 ORTHO05D002268 6.9e-12 74.3 104 35.6
Ca_13826_v3 Cicer arietinum L. HOM05D000593 ORTHO05D004526 9.0e-12 73.9 76 46.1
vmacro14527 Vaccinium macrocarpon HOM05D000593 ORTHO05D002268 9.0e-12 73.9 100 42.0
vmacro21289 Vaccinium macrocarpon HOM05D000593 ORTHO05D002268 9.0e-12 73.9 100 42.0
Ca_10000_v3 Cicer arietinum L. HOM05D000009 ORTHO05D000008 2.0e-11 72.8 95 38.9
TWI38G1252 Tripterygium wilfordii HOM05D000593 ORTHO05D002268 2.0e-11 72.8 94 41.5
CSS0038546 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D000562 3.4e-11 72.0 117 34.2
TWI31G0510 Tripterygium wilfordii HOM05D000593 ORTHO05D002268 3.4e-11 72.0 86 45.3
TWI81G0406 Tripterygium wilfordii HOM05D000593 ORTHO05D002268 3.4e-11 72.0 97 41.2
CSS0044639 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D000562 4.5e-11 71.6 117 33.3
CSS0017978 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D000562 5.8e-11 71.2 117 34.2
Ca_11910_v3 Cicer arietinum L. HOM05D003216 ORTHO05D002268 5.8e-11 71.2 105 36.2
TPR.G40224 Trifolium pratense HOM05D003216 ORTHO05D002268 9.9e-11 70.5 97 35.1
TWI63G0981 Tripterygium wilfordii HOM05D000593 ORTHO05D002268 9.9e-11 70.5 117 30.8
ECA233G2800 Erigeron canadensis HOM05D000593 ORTHO05D000562 1.3e-10 70.1 95 35.8
FvH4_6g38841 Fragaria vesca HOM05D003216 ORTHO05D002268 1.3e-10 70.1 92 42.4
PSO190G0002 Papaver somniferum HOM05D013875 ORTHO05D002268 2.2e-10 69.3 104 36.5
PSO601G0026 Papaver somniferum HOM05D013875 ORTHO05D002268 2.2e-10 69.3 104 36.5
PSO729G0107 Papaver somniferum HOM05D013875 ORTHO05D002268 2.9e-10 68.9 104 36.5
SGA_v2.0_scaffold106G30618 Striga asiatica HOM05D000593 ORTHO05D002268 3.8e-10 68.6 95 36.8
SGA_v2.0_scaffold126G33866 Striga asiatica HOM05D000593 ORTHO05D002268 3.8e-10 68.6 95 36.8
SGA_v2.0_scaffold17G08149 Striga asiatica HOM05D000593 ORTHO05D002268 3.8e-10 68.6 95 36.8
SGA_v2.0_scaffold1G00721 Striga asiatica HOM05D000593 ORTHO05D002268 3.8e-10 68.6 95 36.8
SGA_v2.0_scaffold22G09752 Striga asiatica HOM05D000593 ORTHO05D002268 3.8e-10 68.6 95 36.8
SGA_v2.0_scaffold286G47098 Striga asiatica HOM05D000164 ORTHO05D000096 3.8e-10 68.6 95 36.8
SGA_v2.0_scaffold31G12776 Striga asiatica HOM05D000593 ORTHO05D002268 3.8e-10 68.6 95 36.8
SGA_v2.0_scaffold57G20229 Striga asiatica HOM05D006226 ORTHO05D007738 3.8e-10 68.6 95 36.8
CSS0009535 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D000562 4.9e-10 68.2 118 33.9
ECA248G1709 Erigeron canadensis HOM05D000593 ORTHO05D000562 4.9e-10 68.2 95 35.8
HanXRQChr05g0151291 Helianthus annuus HOM05D000593 ORTHO05D000562 8.4e-10 67.4 105 33.3
TWI81G0284 Tripterygium wilfordii HOM05D000593 ORTHO05D002268 1.1e-09 67.0 84 45.2
Ca_07608_v3 Cicer arietinum L. HOM05D004283 ORTHO05D002268 1.9e-09 66.2 95 33.7
Ca_14741_v3 Cicer arietinum L. HOM05D003326 ORTHO05D001185 1.9e-09 66.2 95 33.7
ECA233G1330 Erigeron canadensis HOM05D000593 ORTHO05D000562 1.9e-09 66.2 95 36.8
GSVIVG01023955001 Vitis vinifera HOM05D000593 ORTHO05D000562 1.9e-09 66.2 61 52.5
FvH4_5g25511 Fragaria vesca HOM05D000593 ORTHO05D000562 3.2e-09 65.5 122 34.4
TWI73G0096 Tripterygium wilfordii HOM05D000593 ORTHO05D000562 3.2e-09 65.5 98 36.7
CSS0040938 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D000562 5.5e-09 64.7 117 33.3
FvH4_5g20623 Fragaria vesca HOM05D000593 ORTHO05D000562 7.1e-09 64.3 129 34.9
HanXRQChr17g0552941 Helianthus annuus HOM05D000593 ORTHO05D000562 7.1e-09 64.3 105 32.4
Ca_25321_v3 Cicer arietinum L. HOM05D003216 ORTHO05D002268 9.3e-09 63.9 95 32.6
ECA233G4219 Erigeron canadensis HOM05D000593 ORTHO05D000562 1.2e-08 63.5 88 35.2
CSS0003309 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D000562 1.6e-08 63.2 117 32.5
TWI75G0109 Tripterygium wilfordii HOM05D003216 ORTHO05D002268 1.6e-08 63.2 97 35.1
HanXRQChr08g0232231 Helianthus annuus HOM05D000593 ORTHO05D000562 2.1e-08 62.8 116 28.4
HanXRQChr13g0412791 Helianthus annuus HOM05D000593 ORTHO05D000562 2.1e-08 62.8 116 28.4
HanXRQChr15g0467831 Helianthus annuus HOM05D000593 ORTHO05D000562 2.1e-08 62.8 116 28.4
PSO210G1587 Papaver somniferum HOM05D003216 ORTHO05D002268 2.1e-08 62.8 98 34.7
ECA234G2373 Erigeron canadensis HOM05D000593 ORTHO05D000562 2.7e-08 62.4 95 32.6
Atru.chr3.1390 Acer truncatum HOM05D000593 ORTHO05D000562 3.5e-08 62.0 62 53.2
ECA240G0778 Erigeron canadensis HOM05D000593 ORTHO05D000562 3.5e-08 62.0 95 34.7
Oeu028054.1 Olea europaea HOM05D000593 ORTHO05D002268 4.6e-08 61.6 60 50.0
TWI59G0546 Tripterygium wilfordii HOM05D000593 ORTHO05D000562 4.6e-08 61.6 71 47.9
Aqoxy1G03120 Aquilegia oxysepala HOM05D000593 ORTHO05D000562 7.9e-08 60.8 115 28.7
PSO729G0017 Papaver somniferum HOM05D013875 ORTHO05D002268 7.9e-08 60.8 97 34.0
Aqoxy3G00378 Aquilegia oxysepala HOM05D003216 ORTHO05D002268 1.0e-07 60.5 109 34.9
CSS0038609 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D000562 1.0e-07 60.5 117 30.8
Atru.chr7.1886 Acer truncatum HOM05D000593 ORTHO05D000562 1.8e-07 59.7 59 52.5
Ca_11017_v3 Cicer arietinum L. HOM05D003216 ORTHO05D002268 2.3e-07 59.3 100 34.0
Medtr8g020437 Medicago truncatula HOM05D003216 ORTHO05D002268 2.3e-07 59.3 101 33.7
TWI81G0336 Tripterygium wilfordii HOM05D000593 ORTHO05D002268 2.3e-07 59.3 84 41.7
Atru.chr9.1259 Acer truncatum HOM05D000593 ORTHO05D002268 3.9e-07 58.5 62 50.0
Oeu064531.1 Olea europaea HOM05D000593 ORTHO05D002268 3.9e-07 58.5 60 50.0
PSO339G0458 Papaver somniferum HOM05D000593 ORTHO05D002268 5.1e-07 58.2 98 33.7
TWI59G1088 Tripterygium wilfordii HOM05D000593 ORTHO05D002268 6.7e-07 57.8 81 34.6
Aqoxy7G02090 Aquilegia oxysepala HOM05D000593 ORTHO05D000562 8.7e-07 57.4 80 36.2
ECA246G0789 Erigeron canadensis HOM05D004279 ORTHO05D004979 8.7e-07 57.4 94 40.4
HanXRQChr08g0215981 Helianthus annuus HOM05D000593 ORTHO05D002268 8.7e-07 57.4 98 29.6
Medtr1g035110 Medicago truncatula HOM05D003216 ORTHO05D002268 8.7e-07 57.4 101 33.7
ECA240G3759 Erigeron canadensis HOM05D000593 ORTHO05D002268 1.9e-06 56.2 94 39.4
Medtr7g029645 Medicago truncatula HOM05D003216 ORTHO05D002268 1.9e-06 56.2 101 33.7
Ca_01383_v3 Cicer arietinum L. HOM05D003216 ORTHO05D002268 2.5e-06 55.8 95 32.6
Medtr3g463860 Medicago truncatula HOM05D003216 ORTHO05D002268 2.5e-06 55.8 99 34.3
Medtr8g446690 Medicago truncatula HOM05D003216 ORTHO05D002268 3.3e-06 55.5 101 31.7
Medtr2g096070 Medicago truncatula HOM05D003216 ORTHO05D002268 4.3e-06 55.1 100 33.0
TPR.G20359 Trifolium pratense HOM05D003216 ORTHO05D002268 4.3e-06 55.1 100 36.0
vmacro11426 Vaccinium macrocarpon HOM05D000455 ORTHO05D000434 4.3e-06 55.1 57 40.4
Medtr1g036180 Medicago truncatula HOM05D003216 ORTHO05D002268 7.4e-06 54.3 95 30.5
TWI36G1263 Tripterygium wilfordii HOM05D003216 ORTHO05D002268 7.4e-06 54.3 69 31.9


User provided reference genes

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