Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015256 Camellia sinensis var. sinensis HOM05D000729 ORTHO05D001063 7.9e-43 176.8 95 100.0
CSS0022865 Camellia sinensis var. sinensis HOM05D000729 ORTHO05D001063 7.9e-35 150.2 88 92.0
HanXRQChr00c0533g0575531 Helianthus annuus HOM05D000729 ORTHO05D001063 7.9e-35 150.2 102 81.4
HanXRQChr17g0567651 Helianthus annuus HOM05D000729 ORTHO05D001063 2.3e-34 148.7 101 81.2
Nitab4.5_0018575g0010 Nicotiana tabacum HOM05D000729 ORTHO05D001063 2.3e-34 148.7 93 84.9
Gohir.D02G117466 Gossypium hirsutum HOM05D000729 ORTHO05D001063 3.0e-34 148.3 102 80.4
CSS0038723 Camellia sinensis var. sinensis HOM05D000729 ORTHO05D001063 6.7e-34 147.1 116 72.4
Gohir.A09G046338 Gossypium hirsutum HOM05D000729 ORTHO05D001063 6.7e-34 147.1 101 80.2
CAN.G1021.15 Capsicum annuum HOM05D000729 ORTHO05D001063 1.1e-33 146.4 116 71.6
Gohir.A11G180330 Gossypium hirsutum HOM05D000729 ORTHO05D001063 1.1e-33 146.4 116 71.6
CAN.G1191.10 Capsicum annuum HOM05D000729 ORTHO05D001063 1.5e-33 146.0 116 71.6
CAN.G1045.7 Capsicum annuum HOM05D000729 ORTHO05D001063 2.6e-33 145.2 116 71.6
CAN.G1875.3 Capsicum annuum HOM05D000729 ORTHO05D001063 2.6e-33 145.2 116 71.6
CAN.G21.56 Capsicum annuum HOM05D000729 ORTHO05D001063 2.6e-33 145.2 116 71.6
CAN.G267.19 Capsicum annuum HOM05D000729 ORTHO05D001063 2.6e-33 145.2 116 71.6
CAN.G343.3 Capsicum annuum HOM05D000729 ORTHO05D001063 2.6e-33 145.2 116 71.6
CAN.G547.17 Capsicum annuum HOM05D000729 ORTHO05D001063 2.6e-33 145.2 116 71.6
Gohir.A05G323796 Gossypium hirsutum HOM05D000729 ORTHO05D001063 2.6e-33 145.2 116 71.6
HanXRQChr00c0264g0572891 Helianthus annuus HOM05D000729 ORTHO05D001063 2.6e-33 145.2 116 71.6
HanXRQChr00c0434g0574661 Helianthus annuus HOM05D000729 ORTHO05D001063 2.6e-33 145.2 116 71.6
HanXRQChr00c0554g0575661 Helianthus annuus HOM05D000729 ORTHO05D001063 2.6e-33 145.2 116 71.6
HanXRQChr00c0788g0577381 Helianthus annuus HOM05D000729 ORTHO05D001063 2.6e-33 145.2 116 71.6
HanXRQChr01g0020151 Helianthus annuus HOM05D000729 ORTHO05D001063 2.6e-33 145.2 116 71.6
HanXRQChr05g0150471 Helianthus annuus HOM05D000729 ORTHO05D001063 2.6e-33 145.2 116 71.6
HanXRQChr05g0152351 Helianthus annuus HOM05D000729 ORTHO05D001063 2.6e-33 145.2 116 71.6
HanXRQChr05g0152491 Helianthus annuus HOM05D000729 ORTHO05D001063 2.6e-33 145.2 116 71.6
HanXRQChr07g0194901 Helianthus annuus HOM05D000729 ORTHO05D001063 2.6e-33 145.2 116 71.6
HanXRQChr10g0284481 Helianthus annuus HOM05D000729 ORTHO05D001063 2.6e-33 145.2 116 71.6
HanXRQChr10g0317951 Helianthus annuus HOM05D000729 ORTHO05D001063 2.6e-33 145.2 116 71.6
HanXRQChr11g0321181 Helianthus annuus HOM05D000729 ORTHO05D001063 2.6e-33 145.2 116 71.6
HanXRQChr11g0327111 Helianthus annuus HOM05D000729 ORTHO05D001063 2.6e-33 145.2 116 71.6
HanXRQChr11g0333791 Helianthus annuus HOM05D000729 ORTHO05D001063 2.6e-33 145.2 116 71.6
HanXRQChr12g0369921 Helianthus annuus HOM05D000729 ORTHO05D001063 2.6e-33 145.2 116 71.6
HanXRQChr13g0416581 Helianthus annuus HOM05D000729 ORTHO05D001063 2.6e-33 145.2 116 71.6
HanXRQChr17g0569661 Helianthus annuus HOM05D000729 ORTHO05D001063 2.6e-33 145.2 116 71.6
HanXRQCPg0580271 Helianthus annuus HOM05D000729 ORTHO05D001063 2.6e-33 145.2 116 71.6
HanXRQCPg0580451 Helianthus annuus HOM05D000729 ORTHO05D001063 2.6e-33 145.2 116 71.6
Hma1.2p1_0052F.1_g030753 Hydrangea macrophylla HOM05D000729 ORTHO05D001063 2.6e-33 145.2 116 71.6
Hma1.2p1_0052F.1_g030756 Hydrangea macrophylla HOM05D000729 ORTHO05D001063 2.6e-33 145.2 116 71.6
Hma1.2p1_1244F.1_g270050 Hydrangea macrophylla HOM05D000729 ORTHO05D001063 2.6e-33 145.2 116 71.6
Hma1.2p1_1244F.1_g270060 Hydrangea macrophylla HOM05D000729 ORTHO05D001063 2.6e-33 145.2 116 71.6
Lsat_1_v5_gn_3_92301 Lactuca sativa HOM05D000729 ORTHO05D001063 2.6e-33 145.2 116 71.6
Lsat_1_v5_gn_9_18660 Lactuca sativa HOM05D000729 ORTHO05D001063 2.6e-33 145.2 116 71.6
PGR111G0104 Punica granatum HOM05D000729 ORTHO05D001063 2.6e-33 145.2 116 71.6
PGR111G0125 Punica granatum HOM05D000729 ORTHO05D001063 2.6e-33 145.2 116 71.6
SalBow1G3941 Salvia bowleyana HOM05D000729 ORTHO05D001063 2.6e-33 145.2 116 71.6
SalBow1G4562 Salvia bowleyana HOM05D000729 ORTHO05D001063 2.6e-33 145.2 116 71.6
SalBow1G6647 Salvia bowleyana HOM05D000729 ORTHO05D001063 2.6e-33 145.2 116 71.6
PSO548G0058 Papaver somniferum HOM05D000729 ORTHO05D001063 4.4e-33 144.4 116 70.7
PSO548G0065 Papaver somniferum HOM05D000729 ORTHO05D001063 4.4e-33 144.4 116 70.7
FAN24G1010 Fragaria x ananassa HOM05D000729 ORTHO05D001063 7.4e-33 143.7 116 69.8
HanXRQChr13g0418941 Helianthus annuus HOM05D000729 ORTHO05D001063 7.4e-33 143.7 116 70.7
Lalb_Chr07g0191911 Lupinus albus HOM05D000729 ORTHO05D001063 9.7e-33 143.3 116 70.7
Medtr0002s0310 Medicago truncatula HOM05D000729 ORTHO05D001063 9.7e-33 143.3 117 69.2
RcHm_v2.0_Chr5g0051111 Rosa chinensis HOM05D000729 ORTHO05D001063 9.7e-33 143.3 116 70.7
RcHm_v2.0_CPg0501771 Rosa chinensis HOM05D000729 ORTHO05D001063 9.7e-33 143.3 116 70.7
RcHm_v2.0_CPg0502641 Rosa chinensis HOM05D000729 ORTHO05D001063 9.7e-33 143.3 116 70.7
Sed0001647 Sechium edule HOM05D000729 ORTHO05D001063 9.7e-33 143.3 116 70.7
EL10As12g24040 Beta vulgaris HOM05D000729 ORTHO05D001063 1.3e-32 142.9 93 80.6
Gorai.003G150500 Gossypium raimondii HOM05D000729 ORTHO05D001063 1.3e-32 142.9 116 70.7
Nn029s41589 Nelumbo nucifera HOM05D000729 ORTHO05D001063 1.3e-32 142.9 116 70.7
Nn206s45070 Nelumbo nucifera HOM05D000729 ORTHO05D001063 1.3e-32 142.9 116 70.7
Nn219s45285 Nelumbo nucifera HOM05D000729 ORTHO05D001063 1.3e-32 142.9 116 70.7
Nn233s45562 Nelumbo nucifera HOM05D000729 ORTHO05D001063 1.3e-32 142.9 116 70.7
Nn269s46006 Nelumbo nucifera HOM05D000729 ORTHO05D001063 1.3e-32 142.9 116 70.7
Solyc00g500146.1 Solanum lycopersicum HOM05D000729 ORTHO05D001063 1.3e-32 142.9 116 70.7
QL93p0823_0001 Quercus lobata HOM05D000729 ORTHO05D001063 2.2e-32 142.1 116 70.7
CAN.G1148.5 Capsicum annuum HOM05D000729 ORTHO05D001063 3.7e-32 141.4 116 70.7
DCAR_032530 Daucus carota HOM05D000729 ORTHO05D001063 3.7e-32 141.4 116 69.8
DCAR_032546 Daucus carota HOM05D000729 ORTHO05D001063 3.7e-32 141.4 116 69.8
Gohir.D01G101839 Gossypium hirsutum HOM05D000729 ORTHO05D001063 3.7e-32 141.4 116 69.8
Lj2P1238T95 Lonicera japonica HOM05D000729 ORTHO05D001063 3.7e-32 141.4 116 69.8
Lj2P1239T117 Lonicera japonica HOM05D000729 ORTHO05D001063 3.7e-32 141.4 116 69.8
Lalb_Chr05g0227471 Lupinus albus HOM05D000729 ORTHO05D001063 3.7e-32 141.4 116 70.7
Medtr3g035660 Medicago truncatula HOM05D000729 ORTHO05D001063 3.7e-32 141.4 116 69.0
AL1G51260 Arabidopsis lyrata HOM05D000729 ORTHO05D001063 4.8e-32 141.0 116 69.8
AL7G44080 Arabidopsis lyrata HOM05D000729 ORTHO05D001063 4.8e-32 141.0 116 69.8
arahy.Tifrunner.gnm1.ann1.8IFR8Y Arachis hypogaea HOM05D000729 ORTHO05D001063 6.3e-32 140.6 116 69.8
arahy.Tifrunner.gnm1.ann1.A85ADF Arachis hypogaea HOM05D000729 ORTHO05D001063 6.3e-32 140.6 116 69.8
arahy.Tifrunner.gnm1.ann1.FU0XIN Arachis hypogaea HOM05D000729 ORTHO05D001063 6.3e-32 140.6 116 69.8
arahy.Tifrunner.gnm1.ann1.NGJ0AN Arachis hypogaea HOM05D000729 ORTHO05D001063 6.3e-32 140.6 116 69.8
arahy.Tifrunner.gnm1.ann1.NIYG2M Arachis hypogaea HOM05D000729 ORTHO05D001063 6.3e-32 140.6 116 69.8
arahy.Tifrunner.gnm1.ann1.S6TNUT Arachis hypogaea HOM05D000729 ORTHO05D001063 6.3e-32 140.6 116 69.8
RcHm_v2.0_Chr2g0118411 Rosa chinensis HOM05D000729 ORTHO05D001063 6.3e-32 140.6 116 69.0
EL10Ac5g11886 Beta vulgaris HOM05D000729 ORTHO05D001063 8.2e-32 140.2 116 69.0
EL10As15g24113 Beta vulgaris HOM05D000729 ORTHO05D001063 8.2e-32 140.2 116 69.0
AL2G21870 Arabidopsis lyrata HOM05D000729 ORTHO05D001063 1.1e-31 139.8 116 69.0
ATCG00890 Arabidopsis thaliana HOM05D000729 ORTHO05D001063 1.1e-31 139.8 116 69.0
ATCG01250 Arabidopsis thaliana HOM05D000729 ORTHO05D001063 1.1e-31 139.8 116 69.0
Gohir.D06G107201 Gossypium hirsutum HOM05D000729 ORTHO05D001063 1.1e-31 139.8 116 69.8
Gohir.A02G077402 Gossypium hirsutum HOM05D000729 ORTHO05D001063 1.8e-31 139.0 116 69.0
Phvul.003G089803 Phaseolus vulgaris HOM05D000729 ORTHO05D001063 1.8e-31 139.0 116 68.1
Phvul.009G090284 Phaseolus vulgaris HOM05D000729 ORTHO05D001063 1.8e-31 139.0 116 68.1
BolSC29t60494H Brassica oleracea HOM05D000729 ORTHO05D001063 2.4e-31 138.7 116 69.0
BolSC29t60537H Brassica oleracea HOM05D000729 ORTHO05D001063 2.4e-31 138.7 116 69.0
BolSC45t60922H Brassica oleracea HOM05D000729 ORTHO05D001063 2.4e-31 138.7 116 69.0
BraSC103t45436Z Brassica rapa HOM05D000729 ORTHO05D001063 2.4e-31 138.7 116 69.0
BraSC25t45897Z Brassica rapa HOM05D000729 ORTHO05D001063 2.4e-31 138.7 116 69.0
BraSC59t46538Z Brassica rapa HOM05D000729 ORTHO05D001063 2.4e-31 138.7 116 69.0
BraSC59t46561Z Brassica rapa HOM05D000729 ORTHO05D001063 2.4e-31 138.7 116 69.0
Oeu012825.1 Olea europaea HOM05D000729 ORTHO05D001063 3.1e-31 138.3 117 69.2
HanXRQChr00c0386g0574421 Helianthus annuus HOM05D000729 ORTHO05D001063 7.0e-31 137.1 113 70.8
Cpa.g.sc2.66 Carica papaya HOM05D000729 ORTHO05D001063 9.1e-31 136.7 115 67.0
LjContig00319g0001918 Lotus japonicus HOM05D000729 ORTHO05D001063 9.1e-31 136.7 116 68.1
arahy.Tifrunner.gnm1.ann1.R4S00L Arachis hypogaea HOM05D000729 ORTHO05D001063 1.6e-30 136.0 116 68.1
Gohir.A08G249972 Gossypium hirsutum HOM05D000729 ORTHO05D001063 1.6e-30 136.0 116 70.7
SabraPtG0004800 Salix brachista HOM05D000729 ORTHO05D001063 1.6e-30 136.0 116 67.2
HanXRQChr00c0451g0574811 Helianthus annuus HOM05D000729 ORTHO05D001063 4.5e-30 134.4 93 80.6
BraSC103t45493Z Brassica rapa HOM05D000729 ORTHO05D001063 5.9e-30 134.0 117 68.4
Lj4g0028091 Lotus japonicus HOM05D000729 ORTHO05D001063 7.7e-30 133.7 117 66.7
arahy.Tifrunner.gnm1.ann1.0BYT70 Arachis hypogaea HOM05D000729 ORTHO05D001063 1.7e-29 132.5 117 66.7
Lsat_1_v5_gn_4_11820 Lactuca sativa HOM05D000729 ORTHO05D001063 2.9e-29 131.7 115 66.1
Solyc11g021090.3 Solanum lycopersicum HOM05D000729 ORTHO05D001063 5.5e-28 127.5 110 69.1
BolSC47t61055H Brassica oleracea HOM05D000729 ORTHO05D001063 8.0e-27 123.6 108 67.6
LjContig00489g0003974 Lotus japonicus HOM05D000729 ORTHO05D001063 1.0e-26 123.2 110 68.2
Migut.D01322 Erythranthe guttata HOM05D000729 ORTHO05D001063 4.0e-26 121.3 100 71.0
HanXRQChr00c0572g0575991 Helianthus annuus HOM05D000729 ORTHO05D001063 8.8e-26 120.2 70 88.6
AL9U12020 Arabidopsis lyrata HOM05D000729 ORTHO05D001063 1.5e-25 119.4 100 70.0
Nitab4.5_0027450g0010 Nicotiana tabacum HOM05D000729 ORTHO05D001063 1.5e-25 119.4 93 73.1
HanXRQChr00c0585g0576201 Helianthus annuus HOM05D000729 ORTHO05D001063 2.0e-25 119.0 101 68.3
CARHR282330 Cardamine hirsuta HOM05D000729 ORTHO05D001063 3.3e-25 118.2 100 69.0
CARHR282530 Cardamine hirsuta HOM05D000729 ORTHO05D001063 3.3e-25 118.2 100 69.0
Potri.011G075051 Populus trichocarpa HOM05D000729 ORTHO05D001063 3.3e-25 118.2 110 62.7
HanXRQChr03g0064311 Helianthus annuus HOM05D000729 ORTHO05D001063 4.8e-24 114.4 72 84.7
Lalb_Chr12g0206641 Lupinus albus HOM05D000729 ORTHO05D001063 4.8e-24 114.4 68 86.8
Migut.D01404 Erythranthe guttata HOM05D000729 ORTHO05D001063 8.2e-24 113.6 75 80.0
Nitab4.5_0005246g0030 Nicotiana tabacum HOM05D000729 ORTHO05D001063 1.8e-23 112.5 102 66.7
Gorai.010G067500 Gossypium raimondii HOM05D000729 ORTHO05D001063 4.1e-23 111.3 67 85.1
CAN.G262.3 Capsicum annuum HOM05D000729 ORTHO05D001063 7.0e-23 110.5 72 83.3
Nitab4.5_0004929g0010 Nicotiana tabacum HOM05D000729 ORTHO05D001063 1.2e-22 109.8 72 79.2
Solyc10g061887.1 Solanum lycopersicum HOM05D000729 ORTHO05D001063 5.9e-22 107.5 91 67.0
Gorai.003G065500 Gossypium raimondii HOM05D000729 ORTHO05D001063 1.5e-20 102.8 68 79.4
Gohir.D11G234166 Gossypium hirsutum HOM05D000729 ORTHO05D001063 2.5e-20 102.1 68 79.4
Glyma.05G094500 Glycine max HOM05D000729 ORTHO05D001063 9.4e-20 100.1 62 82.3
Gorai.005G160600 Gossypium raimondii HOM05D000729 ORTHO05D001063 9.4e-20 100.1 68 80.9
Gohir.D02G143001 Gossypium hirsutum HOM05D000729 ORTHO05D001063 1.6e-19 99.4 68 79.4
Nitab4.5_0000241g0080 Nicotiana tabacum HOM05D000729 ORTHO05D001063 3.6e-19 98.2 102 64.7
Nitab4.5_0012260g0090 Nicotiana tabacum HOM05D000729 ORTHO05D001063 4.7e-19 97.8 100 64.0
Nn241s45687 Nelumbo nucifera HOM05D000729 ORTHO05D001063 8.0e-19 97.1 53 90.6
Gohir.D11G278650 Gossypium hirsutum HOM05D000729 ORTHO05D001063 3.0e-18 95.1 67 79.1
Gorai.007G300800 Gossypium raimondii HOM05D000729 ORTHO05D001063 5.2e-18 94.4 67 77.6
Solyc04g039790.3 Solanum lycopersicum HOM05D000729 ORTHO05D001063 2.6e-17 92.0 72 70.8
Lsat_1_v5_gn_5_163541 Lactuca sativa HOM05D000729 ORTHO05D001063 3.4e-17 91.7 116 55.2
Psat0s2011g0040 Pisum sativum HOM05D000729 ORTHO05D001063 4.4e-17 91.3 84 61.9
TPR.G39041 Trifolium pratense HOM05D000729 ORTHO05D001063 4.4e-17 91.3 97 57.7
Solyc09g055840.1 Solanum lycopersicum HOM05D000729 ORTHO05D001063 9.8e-17 90.1 51 88.2
EL10As15g24106 Beta vulgaris HOM05D000729 ORTHO05D001063 1.3e-16 89.7 145 42.1
arahy.Tifrunner.gnm1.ann1.IXN31S Arachis hypogaea HOM05D000729 ORTHO05D001063 1.7e-16 89.4 116 54.3
Lalb_Chr04g0260201 Lupinus albus HOM05D000729 ORTHO05D001063 1.7e-16 89.4 63 71.4
Nitab4.5_0001761g0010 Nicotiana tabacum HOM05D000729 ORTHO05D001063 2.2e-16 89.0 73 74.0
Solyc12g027820.1 Solanum lycopersicum HOM05D000729 ORTHO05D001063 4.8e-16 87.8 51 86.3
Glyma.01G201500 Glycine max HOM05D000729 ORTHO05D001063 1.1e-15 86.7 51 86.3
arahy.Tifrunner.gnm1.ann1.HJG1UD Arachis hypogaea HOM05D000729 ORTHO05D001063 2.4e-15 85.5 101 57.4
Solyc01g017260.1 Solanum lycopersicum HOM05D000729 ORTHO05D001063 5.4e-15 84.3 72 66.7
EL10As15g24115 Beta vulgaris HOM05D000729 ORTHO05D001063 7.0e-15 84.0 75 64.0
EL10Ac8g19099 Beta vulgaris HOM05D000729 ORTHO05D001063 3.5e-14 81.6 51 80.4
Peaxi162Scf00080g00517 Petunia axillaris HOM05D000729 ORTHO05D001063 1.0e-13 80.1 99 54.5
Lalb_Chr25g0281841 Lupinus albus HOM05D000729 ORTHO05D001063 2.3e-13 79.0 50 78.0
HanXRQChr00c0349g0574001 Helianthus annuus HOM05D000729 ORTHO05D001063 1.5e-12 76.3 74 62.2
Nitab4.5_0004471g0070 Nicotiana tabacum HOM05D000729 ORTHO05D001063 5.5e-12 74.3 47 78.7
BraSC58t46469Z Brassica rapa HOM05D000729 ORTHO05D001063 1.2e-11 73.2 73 60.3
Migut.D01376 Erythranthe guttata HOM05D000729 ORTHO05D001063 2.8e-11 72.0 44 79.5
Solyc02g011910.1 Solanum lycopersicum HOM05D000729 ORTHO05D001063 1.2e-09 66.6 40 85.0
SEGI_37255 Sequoiadendron giganteum HOM05D000729 ORTHO05D001063 2.6e-09 65.5 74 52.7
Eucgr.J02732 Eucalyptus grandis HOM05D000729 ORTHO05D001063 5.7e-09 64.3 71 54.9
Nitab4.5_0003706g0020 Nicotiana tabacum HOM05D000729 ORTHO05D001063 1.3e-08 63.2 33 90.9
Nitab4.5_0000149g0250 Nicotiana tabacum HOM05D000729 ORTHO05D013759 8.3e-08 60.5 31 90.3
Solyc09g050069.1 Solanum lycopersicum HOM05D000729 ORTHO05D001063 1.8e-07 59.3 84 48.8
Solyc01g017160.2 Solanum lycopersicum HOM05D000729 ORTHO05D001063 1.2e-06 56.6 32 81.2
arahy.Tifrunner.gnm1.ann1.XJN4MJ Arachis hypogaea HOM05D000729 ORTHO05D001063 2.0e-06 55.8 33 87.9
HanXRQChr00c0747g0577151 Helianthus annuus HOM05D000729 ORTHO05D001063 7.8e-06 53.9 75 48.0


User provided reference genes

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