Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015206 Camellia sinensis var. sinensis HOM05D005405 ORTHO05D006333 0.0e+00 1264.2 637 100.0
CSS0036421 Camellia sinensis var. sinensis HOM05D005405 ORTHO05D006333 0.0e+00 1232.2 629 98.6
CSS0043604 Camellia sinensis var. sinensis HOM05D005405 ORTHO05D006333 1.5e-201 706.8 606 64.7
Actinidia11394 Actinidia chinensis HOM05D005405 ORTHO05D006333 8.4e-189 664.5 608 60.5
Dinv38269 Davidia involucrata HOM05D005405 ORTHO05D006333 3.2e-172 609.4 622 59.3
Rhsim02G0053500 Rhododendron simsii HOM05D005405 ORTHO05D006333 1.4e-162 577.4 619 54.8
vmacro15506 Vaccinium macrocarpon HOM05D005405 ORTHO05D006333 5.0e-157 558.9 613 54.5
vmacro23320 Vaccinium macrocarpon HOM05D005405 ORTHO05D006333 4.7e-123 446.0 598 51.5
Rhsim02G0140000 Rhododendron simsii HOM05D005405 ORTHO05D006333 3.1e-114 416.8 532 49.6
RhsimUnG0181000 Rhododendron simsii HOM05D005405 ORTHO05D006333 1.6e-102 377.9 571 46.9
TAR362G0670 Trochodendron aralioides HOM05D005405 ORTHO05D006333 5.4e-95 352.8 717 39.5
RhsimUnG0135700 Rhododendron simsii HOM05D005405 ORTHO05D006333 2.1e-94 350.9 483 49.9
Haze_11572 Corylus avellana HOM05D005405 ORTHO05D006333 1.5e-92 344.7 633 40.9
Cfa014900 Carpinus fangiana HOM05D005405 ORTHO05D006333 2.1e-91 340.9 633 40.9
QL06p023456 Quercus lobata HOM05D005405 ORTHO05D006333 2.4e-90 337.4 619 40.9
Atru.chr4.1776 Acer truncatum HOM05D005405 ORTHO05D006333 4.4e-89 333.2 622 43.1
Lj6A613T36 Lonicera japonica HOM05D005405 ORTHO05D006333 9.3e-87 325.5 613 40.3
Prupe.1G003200 Prunus persica HOM05D005405 ORTHO05D006333 6.6e-85 319.3 617 39.4
TAR365G1216 Trochodendron aralioides HOM05D005405 ORTHO05D006333 5.1e-77 293.1 726 35.3
Oeu022333.1 Olea europaea HOM05D005405 ORTHO05D006333 1.6e-75 288.1 618 38.2
Thecc.04G210400 Theobroma cacao HOM05D005405 ORTHO05D006333 8.1e-75 285.8 601 38.6
Manes.15G050712 Manihot esculenta HOM05D005405 ORTHO05D006333 1.5e-73 281.6 609 39.6
MD04G1003700 Malus domestica HOM05D005405 ORTHO05D006333 5.8e-73 279.6 618 37.4
Duzib268G1747 Durio zibethinus HOM05D005405 ORTHO05D006333 8.4e-72 275.8 610 36.7
Cc03_g07300 Coffea canephora HOM05D005405 ORTHO05D006333 7.1e-71 272.7 618 39.0
Duzib268G1063 Durio zibethinus HOM05D005405 ORTHO05D006333 3.5e-70 270.4 611 36.7
COL.COLO4_20311 Corchorus olitorius HOM05D005405 ORTHO05D006333 1.3e-69 268.5 610 36.2
Sabra03G0129300 Salix brachista HOM05D005405 ORTHO05D006333 7.4e-68 262.7 620 36.5
RcHm_v2.0_Chr4g0385131 Rosa chinensis HOM05D005405 ORTHO05D006333 2.4e-66 257.7 619 35.7
Duzib151G0041 Durio zibethinus HOM05D005405 ORTHO05D006333 2.6e-65 254.2 599 37.4
Potri.003G176500 Populus trichocarpa HOM05D005405 ORTHO05D006333 1.0e-64 252.3 616 36.0
GSVIVG01029065001 Vitis vinifera HOM05D005405 ORTHO05D006333 1.7e-64 251.5 391 45.0
Aqoxy7G02749 Aquilegia oxysepala HOM05D005405 ORTHO05D006333 1.9e-63 248.1 621 35.3
Nn3g19905 Nelumbo nucifera HOM05D005405 ORTHO05D006333 2.1e-62 244.6 702 32.9
CSS0040970 Camellia sinensis var. sinensis HOM05D005405 ORTHO05D006333 7.9e-62 242.7 201 66.7
CiPaw.02G068100 Carya illinoinensis HOM05D005405 ORTHO05D006333 1.0e-61 242.3 380 45.5
Ciclev10004706m.g Citrus clementina HOM05D005405 ORTHO05D006333 1.0e-61 242.3 617 35.3
Peaxi162Scf00047g01223 Petunia axillaris HOM05D005405 ORTHO05D006333 2.1e-59 234.6 599 33.9
Nn1g03142 Nelumbo nucifera HOM05D005405 ORTHO05D006333 2.8e-59 234.2 678 31.1
Nitab4.5_0003904g0030 Nicotiana tabacum HOM05D005405 ORTHO05D006333 3.7e-59 233.8 585 37.1
Sabra01G0036300 Salix brachista HOM05D005405 ORTHO05D006333 3.7e-59 233.8 614 34.7
MSTRG.21949 Avicennia marina HOM05D005405 ORTHO05D006333 6.3e-59 233.0 605 34.2
FvH4_4g00300 Fragaria vesca HOM05D005405 ORTHO05D006333 1.4e-58 231.9 633 34.3
Gohir.A02G024600 Gossypium hirsutum HOM05D005405 ORTHO05D006333 1.8e-58 231.5 606 33.8
Gorai.005G035400 Gossypium raimondii HOM05D005405 ORTHO05D006333 1.8e-58 231.5 606 33.2
Nitab4.5_0002920g0020 Nicotiana tabacum HOM05D005405 ORTHO05D006333 9.0e-58 229.2 597 36.2
Solyc09g091480.4 Solanum lycopersicum HOM05D005405 ORTHO05D006333 2.2e-56 224.6 601 35.4
Sopen09g034410 Solanum pennellii HOM05D005405 ORTHO05D006333 6.5e-56 223.0 595 35.1
DCAR_030784 Daucus carota HOM05D005405 ORTHO05D006333 1.9e-55 221.5 661 33.6
Gohir.D09G196500 Gossypium hirsutum HOM05D005405 ORTHO05D006333 5.5e-55 219.9 615 34.0
FAN12G1620 Fragaria x ananassa HOM05D005405 ORTHO05D006333 7.2e-55 219.5 648 33.2
Gohir.D02G031900 Gossypium hirsutum HOM05D005405 ORTHO05D006333 1.3e-53 215.3 606 32.5
Gorai.006G220000 Gossypium raimondii HOM05D005405 ORTHO05D006333 3.9e-53 213.8 622 33.6
PGSC0003DMG400029647 Solanum tuberosum HOM05D005405 ORTHO05D006333 5.1e-53 213.4 594 34.7
FAN17G2022 Fragaria x ananassa HOM05D005405 ORTHO05D006333 1.6e-51 208.4 602 33.4
Sed0004689 Sechium edule HOM05D005405 ORTHO05D006333 4.8e-51 206.8 620 33.1
Migut.N00342 Erythranthe guttata HOM05D005405 ORTHO05D006333 3.1e-50 204.1 617 33.2
FAN17G2416 Fragaria x ananassa HOM05D005405 ORTHO05D006333 2.6e-49 201.1 629 32.1
Gohir.A09G202500 Gossypium hirsutum HOM05D005405 ORTHO05D006333 9.7e-44 182.6 508 33.9
Lj3C583T4 Lonicera japonica HOM05D005405 ORTHO05D006333 2.2e-43 181.4 495 33.5
ECA238G1203 Erigeron canadensis HOM05D000006 ORTHO05D000001 6.3e-43 179.9 624 32.7
ClCG05G003540 Citrullus lanatus HOM05D005405 ORTHO05D006333 4.1e-42 177.2 625 33.1
MELO3C006332.2 Cucumis melo HOM05D005405 ORTHO05D006333 4.5e-41 173.7 625 31.7
Gorai.011G161600 Gossypium raimondii HOM05D005405 ORTHO05D006333 1.7e-40 171.8 703 29.0
Gohir.D10G144600 Gossypium hirsutum HOM05D005405 ORTHO05D006333 2.2e-40 171.4 701 29.2
CsaV3_3G011210 Cucumis sativus L. HOM05D005405 ORTHO05D006333 5.5e-39 166.8 621 31.4
Sed0022326 Sechium edule HOM05D005405 ORTHO05D006333 1.2e-38 165.6 625 32.2
MBI10_g03399_MAGBIO Magnolia biondii HOM05D005405 ORTHO05D006333 1.6e-38 165.2 637 30.6
PGR142G3403 Punica granatum HOM05D005405 ORTHO05D006333 3.0e-37 161.0 618 30.7
Gohir.A10G121500 Gossypium hirsutum HOM05D005405 ORTHO05D006333 8.8e-37 159.5 688 28.5
Lalb_Chr03g0036631 Lupinus albus HOM05D005405 ORTHO05D006333 4.4e-36 157.1 605 30.9
CANSAT78G2177 Cannabis sativa HOM05D005405 ORTHO05D006333 3.7e-35 154.1 667 27.6
HanXRQChr14g0435041 Helianthus annuus HOM05D005405 ORTHO05D006333 1.8e-34 151.8 594 30.5
Eucgr.H00089 Eucalyptus grandis HOM05D005405 ORTHO05D006333 3.1e-34 151.0 609 28.6
Glyma.20G076700 Glycine max HOM05D005405 ORTHO05D006333 2.6e-33 147.9 530 31.9
Lj6g0005257 Lotus japonicus HOM05D001191 ORTHO05D006333 3.2e-31 141.0 621 31.6
Phvul.007G236500 Phaseolus vulgaris HOM05D005405 ORTHO05D006333 3.2e-31 141.0 529 30.6
Glyma.10G124600 Glycine max HOM05D005405 ORTHO05D006333 4.0e-29 134.0 535 30.5
Cpa.g.sc59.99 Carica papaya HOM05D005405 ORTHO05D006333 8.8e-29 132.9 256 38.3
TPR.G11288 Trifolium pratense HOM05D005405 ORTHO05D006333 3.3e-28 131.0 548 30.8
Medtr1g047180 Medicago truncatula HOM05D005405 ORTHO05D006333 7.5e-28 129.8 583 30.2
THA.LOC104816022 Tarenaya hassleriana HOM05D005405 ORTHO05D006333 4.8e-27 127.1 602 28.2
Lalb_Chr19g0128851 Lupinus albus HOM05D005405 ORTHO05D006333 7.0e-26 123.2 504 30.2
Psat6g048040 Pisum sativum HOM05D005405 ORTHO05D006333 5.9e-25 120.2 586 29.2
PSO764G0275 Papaver somniferum HOM05D059662 ORTHO05D006333 1.1e-23 115.9 692 26.3
Cpa.g.sc59.100 Carica papaya HOM05D005405 ORTHO05D006333 7.2e-23 113.2 351 32.8
Ca_11844_v3 Cicer arietinum L. HOM05D005405 ORTHO05D006333 9.4e-23 112.8 404 35.6
SGA_v2.0_scaffold2G00820 Striga asiatica HOM05D005405 ORTHO05D006333 1.6e-22 112.1 247 36.0
VMungo0720G2049 Vigna mungo HOM05D005405 ORTHO05D006333 2.1e-22 111.7 566 26.7
Lsat_1_v5_gn_1_72381 Lactuca sativa HOM05D005405 ORTHO05D006333 1.2e-20 105.9 601 26.1
AT1G04790 Arabidopsis thaliana HOM05D005405 ORTHO05D006333 9.8e-20 102.8 475 27.4
THA.LOC104801040 Tarenaya hassleriana HOM05D005405 ORTHO05D006333 6.3e-19 100.1 381 32.8
AL1G14510 Arabidopsis lyrata HOM05D005405 ORTHO05D006333 1.4e-18 99.0 598 26.6
Lsat_1_v5_gn_2_43220 Lactuca sativa HOM05D005405 ORTHO05D006333 1.4e-18 99.0 631 26.5
Sc13g0000010 Simmondsia chinensis HOM05D005405 ORTHO05D006333 7.0e-18 96.7 579 26.8
Sc22g0000010 Simmondsia chinensis HOM05D005405 ORTHO05D006333 7.0e-18 96.7 588 27.0
Sp1g03630 Schrenkiella parvula HOM05D005405 ORTHO05D006333 9.1e-18 96.3 596 26.0
arahy.Tifrunner.gnm1.ann1.6I3KXF Arachis hypogaea HOM05D005405 ORTHO05D006333 1.6e-17 95.5 278 32.0
GSVIVG01029064001 Vitis vinifera HOM05D005405 ORTHO05D006333 1.6e-17 95.5 82 61.0
CARHR004180 Cardamine hirsuta HOM05D005405 ORTHO05D006333 5.0e-16 90.5 348 30.5
ECA248G0186 Erigeron canadensis HOM05D005405 ORTHO05D006333 6.5e-16 90.1 623 26.8
arahy.Tifrunner.gnm1.ann1.7RGD68 Arachis hypogaea HOM05D005405 ORTHO05D006333 8.5e-16 89.7 417 27.3
AUR62001292 Chenopodium quinoa HOM05D005405 ORTHO05D006333 4.2e-15 87.4 609 24.8
Hund18545 Selenicereus undatus HOM05D005405 ORTHO05D006333 2.1e-14 85.1 415 29.2
AUR62025677 Chenopodium quinoa HOM05D005405 ORTHO05D006333 6.1e-14 83.6 609 25.3
Thhalv10007101m.g Eutrema salsugineum HOM05D005405 ORTHO05D006333 8.0e-14 83.2 472 27.8
Carub.0001s0404 Capsella rubella HOM05D005405 ORTHO05D006333 1.8e-13 82.0 466 26.6
Aa31LG1G20100 Aethionema arabicum HOM05D005405 ORTHO05D006333 1.5e-12 79.0 667 25.0
Ah.08g218040 Amaranthus hybridus HOM05D005405 ORTHO05D006333 1.5e-12 79.0 601 26.1
ATR0787G170 Amborella trichopoda HOM05D005405 ORTHO05D006333 4.9e-11 73.9 356 30.1
BraA10t42596Z Brassica rapa HOM05D005405 ORTHO05D006333 4.1e-10 70.9 379 27.7
Os04g0511600 Oryza sativa ssp. japonica HOM05D005405 ORTHO05D006333 7.0e-10 70.1 657 25.9
C05p02970 Brassica napus HOM05D005405 ORTHO05D006333 3.5e-09 67.8 348 26.7
BcaC05g24440 Brassica carinata HOM05D005405 ORTHO05D006333 5.9e-09 67.0 381 26.2
A10p03220 Brassica napus HOM05D005405 ORTHO05D006333 5.9e-09 67.0 371 27.8
BolC5t29078H Brassica oleracea HOM05D005405 ORTHO05D006333 7.7e-09 66.6 342 26.6
Hund05655 Selenicereus undatus HOM05D005405 ORTHO05D006333 5.0e-08 63.9 344 25.0
EL10Ac7g18092 Beta vulgaris HOM05D005405 ORTHO05D006333 4.3e-07 60.8 620 23.7
PSO832G2676 Papaver somniferum HOM05D059662 ORTHO05D303300 7.3e-07 60.1 447 24.6
BcaB02g06900 Brassica carinata HOM05D005405 ORTHO05D006333 1.2e-06 59.3 144 34.7
PSO832G0957 Papaver somniferum HOM05D005405 ORTHO05D006333 3.6e-06 57.8 44 65.9


User provided reference genes

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