Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015180 Camellia sinensis var. sinensis HOM05D005794 ORTHO05D006814 3.7e-41 171.0 80 100.0
CSS0006210 Camellia sinensis var. sinensis HOM05D005794 ORTHO05D006814 4.3e-34 147.5 91 82.4
CSS0030187 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 9.7e-10 66.6 51 60.8
CSS0000416 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.8e-08 62.4 51 56.9
CSS0007080 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 5.3e-08 60.8 51 52.9
CSS0025653 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 9.1e-08 60.1 51 54.9
RhsimMtG0003200 Rhododendron simsii HOM05D007924 ORTHO05D010328 9.1e-08 60.1 34 76.5
arahy.Tifrunner.gnm1.ann1.75B77C Arachis hypogaea HOM05D005794 ORTHO05D006814 1.2e-07 59.7 78 42.3
CSS0040614 Camellia sinensis var. sinensis HOM05D019333 ORTHO05D000004 2.0e-07 58.9 41 65.9
AL5G20240 Arabidopsis lyrata HOM05D005794 ORTHO05D006814 2.7e-07 58.5 31 83.9
AT2G07687 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 2.7e-07 58.5 31 83.9
ATMG00730 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 2.7e-07 58.5 31 83.9
arahy.Tifrunner.gnm1.ann1.3CRZ8T Arachis hypogaea HOM05D005794 ORTHO05D006814 2.7e-07 58.5 31 83.9
arahy.Tifrunner.gnm1.ann1.KSB3D6 Arachis hypogaea HOM05D005794 ORTHO05D006814 2.7e-07 58.5 31 83.9
arahy.Tifrunner.gnm1.ann1.R0J8GI Arachis hypogaea HOM05D005794 ORTHO05D006814 2.7e-07 58.5 31 83.9
arahy.Tifrunner.gnm1.ann1.TM4QCS Arachis hypogaea HOM05D005794 ORTHO05D006814 2.7e-07 58.5 31 83.9
arahy.Tifrunner.gnm1.ann1.Y4WQEL Arachis hypogaea HOM05D005794 ORTHO05D006814 2.7e-07 58.5 31 83.9
A04p09480 Brassica napus HOM05D005794 ORTHO05D006814 2.7e-07 58.5 31 83.9
BolSC28t60379H Brassica oleracea HOM05D005794 ORTHO05D006814 2.7e-07 58.5 31 83.9
BolSC28t60413H Brassica oleracea HOM05D005794 ORTHO05D006814 2.7e-07 58.5 31 83.9
BraSC224t45812Z Brassica rapa HOM05D005794 ORTHO05D006814 2.7e-07 58.5 31 83.9
BraSC48t46249Z Brassica rapa HOM05D005794 ORTHO05D006814 2.7e-07 58.5 31 83.9
BraSC54t46376Z Brassica rapa HOM05D005794 ORTHO05D006814 2.7e-07 58.5 31 83.9
BraSC77t46625Z Brassica rapa HOM05D005794 ORTHO05D006814 2.7e-07 58.5 31 83.9
CANSAT16G0022 Cannabis sativa HOM05D005794 ORTHO05D006814 2.7e-07 58.5 31 83.9
CARHR283070 Cardamine hirsuta HOM05D005794 ORTHO05D006814 2.7e-07 58.5 31 83.9
Cpa.g.c32646 Carica papaya HOM05D005794 ORTHO05D006814 2.7e-07 58.5 31 83.9
Duzib116G0905 Durio zibethinus HOM05D005794 ORTHO05D006814 2.7e-07 58.5 31 83.9
Thhalv10023004m.g Eutrema salsugineum HOM05D005794 ORTHO05D006814 2.7e-07 58.5 31 83.9
Glyma.12G155300 Glycine max HOM05D005794 ORTHO05D006814 2.7e-07 58.5 31 83.9
Gorai.001G162400 Gossypium raimondii HOM05D005794 ORTHO05D006814 2.7e-07 58.5 31 83.9
Lj1g0014382 Lotus japonicus HOM05D005794 ORTHO05D006814 2.7e-07 58.5 31 83.9
Lj3g0000092 Lotus japonicus HOM05D005794 ORTHO05D006814 2.7e-07 58.5 31 83.9
LjContig00315g0011412 Lotus japonicus HOM05D005794 ORTHO05D006814 2.7e-07 58.5 31 83.9
Lalb_Chr00c24g0406721 Lupinus albus HOM05D005794 ORTHO05D006814 2.7e-07 58.5 31 83.9
Potri.007G062402 Populus trichocarpa HOM05D005794 ORTHO05D006814 2.7e-07 58.5 31 83.9
RcHm_v2.0_Chr6g0257971 Rosa chinensis HOM05D005794 ORTHO05D006814 2.7e-07 58.5 31 83.9
RcHm_v2.0_MTg0498891 Rosa chinensis HOM05D005794 ORTHO05D006814 2.7e-07 58.5 31 83.9
SabraMtG0005200 Salix brachista HOM05D005794 ORTHO05D006814 2.7e-07 58.5 31 83.9
Sp3g25640 Schrenkiella parvula HOM05D005794 ORTHO05D006814 2.7e-07 58.5 31 83.9
SGA_v2.0_scaffold575G53003 Striga asiatica HOM05D005794 ORTHO05D006814 2.7e-07 58.5 31 83.9
unitig_87.g28013 Utricularia gibba HOM05D005794 ORTHO05D006814 2.7e-07 58.5 31 83.9
CsaV3_5G015890 Cucumis sativus L. HOM05D005794 ORTHO05D006814 3.5e-07 58.2 31 80.6
DCAR_032446 Daucus carota HOM05D005794 ORTHO05D006814 3.5e-07 58.2 31 80.6
Gorai.013G213200 Gossypium raimondii HOM05D005794 ORTHO05D006814 3.5e-07 58.2 31 80.6
Medtr0082s0160 Medicago truncatula HOM05D005794 ORTHO05D006814 3.5e-07 58.2 31 80.6
Ca_28561_v3 Cicer arietinum L. HOM05D005794 ORTHO05D006814 4.5e-07 57.8 31 80.6
CsaV3_5G015820 Cucumis sativus L. HOM05D005794 ORTHO05D006814 4.5e-07 57.8 31 77.4
Lsat_1_v5_gn_0_2580 Lactuca sativa HOM05D005794 ORTHO05D006814 4.5e-07 57.8 78 41.0
Lsat_1_v5_gn_8_111680 Lactuca sativa HOM05D005794 ORTHO05D006814 4.5e-07 57.8 78 41.0
Oeu030834.3 Olea europaea HOM05D005794 ORTHO05D006814 4.5e-07 57.8 34 73.5
VMungo0720G2970 Vigna mungo HOM05D005794 ORTHO05D006814 4.5e-07 57.8 31 80.6
EL10Ac1g02199 Beta vulgaris HOM05D005794 ORTHO05D006814 7.7e-07 57.0 31 80.6
Sabra04G0097400 Salix brachista HOM05D005794 ORTHO05D006814 7.7e-07 57.0 31 80.6
Zm00001eb384510 Zea mays HOM05D005794 ORTHO05D006814 1.0e-06 56.6 31 77.4
Zm00001eb437480 Zea mays HOM05D005794 ORTHO05D006814 1.0e-06 56.6 31 77.4
CDE02G1904 Ceratophyllum demersum HOM05D005794 ORTHO05D006814 1.3e-06 56.2 31 80.6
Hma1.2p1_1338F.1_g276546 Hydrangea macrophylla HOM05D005794 ORTHO05D006814 1.3e-06 56.2 31 80.6
Lj2P1225T95 Lonicera japonica HOM05D005794 ORTHO05D006814 1.3e-06 56.2 31 80.6
Lj2P1227T94 Lonicera japonica HOM05D005794 ORTHO05D006814 1.3e-06 56.2 31 80.6
Nn1g10154 Nelumbo nucifera HOM05D005794 ORTHO05D006814 1.3e-06 56.2 31 80.6
PGR028G0014 Punica granatum HOM05D005794 ORTHO05D006814 1.3e-06 56.2 31 80.6
HanXRQMTg0579171 Helianthus annuus HOM05D005794 ORTHO05D006814 1.7e-06 55.8 31 77.4
Solyc00g500303.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 2.2e-06 55.5 31 77.4
Sopen00g001030 Solanum pennellii HOM05D005794 ORTHO05D006814 2.2e-06 55.5 31 77.4
Sopen06g006940 Solanum pennellii HOM05D005794 ORTHO05D006814 2.2e-06 55.5 31 77.4
CsaV3_5G015960 Cucumis sativus L. HOM05D005794 ORTHO05D006814 2.9e-06 55.1 31 74.2
CSS0018216 Camellia sinensis var. sinensis HOM05D019333 ORTHO05D000004 3.8e-06 54.7 41 58.5
Dinv06703 Davidia involucrata HOM05D005794 ORTHO05D006814 3.8e-06 54.7 31 77.4
SHI15111 Sapria himalayana HOM05D005794 ORTHO05D006814 3.8e-06 54.7 31 77.4
SHI20513 Sapria himalayana HOM05D005794 ORTHO05D006814 5.0e-06 54.3 31 74.2
Actinidia34813 Actinidia chinensis HOM05D005794 ORTHO05D006814 6.5e-06 53.9 30 80.0
Actinidia34939 Actinidia chinensis HOM05D005794 ORTHO05D006814 6.5e-06 53.9 30 80.0
SHI35300 Sapria himalayana HOM05D005794 ORTHO05D006814 6.5e-06 53.9 31 77.4
SHI37163 Sapria himalayana HOM05D005794 ORTHO05D006814 6.5e-06 53.9 31 77.4
SHI44549 Sapria himalayana HOM05D005794 ORTHO05D006814 6.5e-06 53.9 31 77.4
SHI48376 Sapria himalayana HOM05D005794 ORTHO05D006814 6.5e-06 53.9 31 77.4
SHI50742 Sapria himalayana HOM05D005794 ORTHO05D006814 6.5e-06 53.9 31 77.4
Nitab4.5_0008916g0010 Nicotiana tabacum HOM05D005794 ORTHO05D006814 8.5e-06 53.5 78 37.2


User provided reference genes

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