Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015169 Camellia sinensis var. sinensis HOM05D006509 ORTHO05D008144 1.2e-183 646.4 328 100.0
Actinidia04136 Actinidia chinensis HOM05D006509 ORTHO05D008144 2.4e-123 446.0 329 69.0
vmacro14294 Vaccinium macrocarpon HOM05D006509 ORTHO05D008144 1.4e-115 420.2 330 66.4
vmacro23064 Vaccinium macrocarpon HOM05D006509 ORTHO05D008144 1.4e-115 420.2 330 66.4
Hma1.2p1_1005F.1_g246910 Hydrangea macrophylla HOM05D006509 ORTHO05D008144 1.7e-113 413.3 329 64.4
GSVIVG01010764001 Vitis vinifera HOM05D006509 ORTHO05D008144 1.6e-111 406.8 324 62.7
TAR629G0624 Trochodendron aralioides HOM05D006509 ORTHO05D008144 3.6e-111 405.6 328 61.6
Nn1g04452 Nelumbo nucifera HOM05D006509 ORTHO05D008144 2.7e-106 389.4 326 60.1
Cfa008714 Carpinus fangiana HOM05D006509 ORTHO05D008144 2.5e-104 382.9 331 59.2
Manes.09G055500 Manihot esculenta HOM05D006509 ORTHO05D008144 5.6e-104 381.7 327 57.5
Lsat_1_v5_gn_3_32880 Lactuca sativa HOM05D006509 ORTHO05D008144 5.2e-102 375.2 326 58.6
CiPaw.05G167100 Carya illinoinensis HOM05D006509 ORTHO05D008144 8.9e-102 374.4 326 61.3
QL03p043626 Quercus lobata HOM05D006509 ORTHO05D008144 5.8e-101 371.7 326 60.4
Thecc.01G136400 Theobroma cacao HOM05D006509 ORTHO05D008144 1.3e-100 370.5 325 58.8
Duzib264G0706 Durio zibethinus HOM05D006509 ORTHO05D008144 3.8e-100 369.0 326 57.4
Rhsim01G0196900 Rhododendron simsii HOM05D006509 ORTHO05D008144 3.8e-100 369.0 390 54.1
HanXRQChr06g0171951 Helianthus annuus HOM05D006509 ORTHO05D008144 1.4e-99 367.1 324 56.8
DCAR_030403 Daucus carota HOM05D006509 ORTHO05D008144 2.7e-98 362.8 329 54.7
Ciclev10032158m.g Citrus clementina HOM05D006509 ORTHO05D008144 6.0e-98 361.7 325 56.0
Nitab4.5_0002192g0100 Nicotiana tabacum HOM05D006509 ORTHO05D008144 1.7e-97 360.1 322 59.0
Sed0013319 Sechium edule HOM05D006509 ORTHO05D008144 1.7e-97 360.1 321 56.4
Haze_11724 Corylus avellana HOM05D006509 ORTHO05D008144 1.1e-96 357.5 314 58.0
TWI74G1084 Tripterygium wilfordii HOM05D006509 ORTHO05D008144 1.9e-96 356.7 327 55.7
EL10Ac9g22921 Beta vulgaris HOM05D006509 ORTHO05D008144 2.5e-96 356.3 339 56.9
Gorai.010G244900 Gossypium raimondii HOM05D006509 ORTHO05D008144 2.1e-95 353.2 335 54.6
Potri.010G170100 Populus trichocarpa HOM05D006509 ORTHO05D008144 4.8e-95 352.1 326 56.4
Atru.chr11.1320 Acer truncatum HOM05D006509 ORTHO05D008144 6.2e-95 351.7 327 56.6
Atru.chr11.1232 Acer truncatum HOM05D006509 ORTHO05D008144 8.1e-95 351.3 327 56.6
Gohir.D13G187200 Gossypium hirsutum HOM05D006509 ORTHO05D008144 8.1e-95 351.3 337 54.3
CANSAT56G2102 Cannabis sativa HOM05D006509 ORTHO05D008144 1.8e-94 350.1 329 55.9
Eucgr.G02566 Eucalyptus grandis HOM05D006509 ORTHO05D008144 2.4e-94 349.7 260 65.0
Sabra10G0129900 Salix brachista HOM05D006509 ORTHO05D008144 6.9e-94 348.2 335 54.9
FAN06G0528 Fragaria x ananassa HOM05D006509 ORTHO05D008144 1.5e-93 347.1 329 54.1
Peaxi162Scf00818g00020 Petunia axillaris HOM05D006509 ORTHO05D008144 1.5e-93 347.1 278 61.2
FvH4_7g19250 Fragaria vesca HOM05D006509 ORTHO05D008144 2.0e-93 346.7 329 54.1
FAN01G2825 Fragaria x ananassa HOM05D006509 ORTHO05D008144 3.4e-93 345.9 329 54.4
CAN.G157.10 Capsicum annuum HOM05D006509 ORTHO05D008144 5.8e-93 345.1 290 61.0
Gohir.A09G005300 Gossypium hirsutum HOM05D006509 ORTHO05D008144 1.3e-92 344.0 329 54.1
Sc06g0007860 Simmondsia chinensis HOM05D006509 ORTHO05D008144 1.7e-92 343.6 244 68.4
Gohir.D09G004600 Gossypium hirsutum HOM05D006509 ORTHO05D008144 2.2e-92 343.2 329 53.8
RcHm_v2.0_Chr1g0363071 Rosa chinensis HOM05D006509 ORTHO05D008144 2.9e-92 342.8 326 54.0
FAN03G0898 Fragaria x ananassa HOM05D006509 ORTHO05D008144 3.8e-92 342.4 294 58.8
Gorai.006G006200 Gossypium raimondii HOM05D006509 ORTHO05D008144 4.9e-92 342.0 329 53.8
MD01G1107600 Malus domestica HOM05D006509 ORTHO05D008144 6.4e-92 341.7 330 54.5
ClCG09G005710 Citrullus lanatus HOM05D006509 ORTHO05D008144 3.2e-91 339.3 328 54.6
Prupe.2G212300 Prunus persica HOM05D006509 ORTHO05D008144 3.2e-91 339.3 317 54.9
CsaV3_7G029430 Cucumis sativus L. HOM05D006509 ORTHO05D008144 3.0e-89 332.8 327 53.2
Glyma.05G160301 Glycine max HOM05D006509 ORTHO05D008144 3.9e-89 332.4 267 60.7
Hund08535 Selenicereus undatus HOM05D006509 ORTHO05D008144 3.9e-89 332.4 242 64.0
Medtr8g086630 Medicago truncatula HOM05D006509 ORTHO05D008144 8.7e-89 331.3 290 55.9
THA.LOC104800032 Tarenaya hassleriana HOM05D006509 ORTHO05D008144 8.7e-89 331.3 247 65.2
AT3G19810 Arabidopsis thaliana HOM05D006509 ORTHO05D008144 2.5e-88 329.7 283 59.7
PSO017G6086 Papaver somniferum HOM05D006509 ORTHO05D008144 4.3e-88 328.9 329 52.6
AL3G33260 Arabidopsis lyrata HOM05D006509 ORTHO05D008144 5.6e-88 328.6 337 53.7
THA.LOC104814131 Tarenaya hassleriana HOM05D006509 ORTHO05D008144 5.6e-88 328.6 249 63.9
FAN10G2131 Fragaria x ananassa HOM05D006509 ORTHO05D008144 7.4e-88 328.2 328 52.7
Ca_17903_v3 Cicer arietinum L. HOM05D006509 ORTHO05D008144 1.6e-87 327.0 329 52.9
Thhalv10021111m.g Eutrema salsugineum HOM05D006509 ORTHO05D008144 1.6e-87 327.0 266 63.5
Lj4g0012507 Lotus japonicus HOM05D006509 ORTHO05D008144 2.1e-87 326.6 240 66.2
PGSC0003DMG400019835 Solanum tuberosum HOM05D006509 ORTHO05D008144 2.1e-87 326.6 240 65.0
arahy.Tifrunner.gnm1.ann1.6728UU Arachis hypogaea HOM05D006509 ORTHO05D008144 3.6e-87 325.9 238 65.1
Gohir.A13G179100 Gossypium hirsutum HOM05D006509 ORTHO05D008144 3.6e-87 325.9 226 68.1
Phvul.002G240600 Phaseolus vulgaris HOM05D006509 ORTHO05D008144 3.6e-87 325.9 324 52.8
TPR.G6737 Trifolium pratense HOM05D006509 ORTHO05D008144 4.8e-87 325.5 270 60.4
C05p44930 Brassica napus HOM05D006509 ORTHO05D008144 8.1e-87 324.7 246 64.2
BolC5t33216H Brassica oleracea HOM05D006509 ORTHO05D008144 8.1e-87 324.7 246 64.2
BcaC05g28409 Brassica carinata HOM05D006509 ORTHO05D008144 1.1e-86 324.3 246 63.8
A05p29310 Brassica napus HOM05D006509 ORTHO05D008144 1.1e-86 324.3 326 53.4
Lj6C721T21 Lonicera japonica HOM05D006509 ORTHO05D008144 1.1e-86 324.3 328 52.1
arahy.Tifrunner.gnm1.ann1.LJ2JSE Arachis hypogaea HOM05D006509 ORTHO05D008144 1.4e-86 323.9 238 65.5
BraA05t21822Z Brassica rapa HOM05D006509 ORTHO05D008144 1.8e-86 323.6 246 63.8
Sp3g17820 Schrenkiella parvula HOM05D006509 ORTHO05D008144 1.8e-86 323.6 331 55.0
BcaB06g26050 Brassica carinata HOM05D006509 ORTHO05D008144 2.4e-86 323.2 247 66.8
CDE04G0697 Ceratophyllum demersum HOM05D006509 ORTHO05D008144 2.4e-86 323.2 277 58.1
Lalb_Chr13g0295231 Lupinus albus HOM05D006509 ORTHO05D008144 3.1e-86 322.8 323 54.8
PGR004G1007 Punica granatum HOM05D006509 ORTHO05D008144 5.3e-86 322.0 333 49.5
CARHR095320 Cardamine hirsuta HOM05D006509 ORTHO05D008144 9.0e-86 321.2 266 62.4
VMungo0251G2215 Vigna mungo HOM05D006509 ORTHO05D008144 1.5e-85 320.5 328 52.1
PSO478G1783 Papaver somniferum HOM05D006509 ORTHO05D008144 2.0e-85 320.1 329 50.8
Carub.0003s1969 Capsella rubella HOM05D006509 ORTHO05D008144 2.6e-85 319.7 249 63.9
MSTRG.22733 Avicennia marina HOM05D006509 ORTHO05D008144 5.8e-85 318.5 280 60.4
arahy.Tifrunner.gnm1.ann1.4V51TJ Arachis hypogaea HOM05D006509 ORTHO05D008144 2.2e-84 316.6 333 50.5
Solyc02g021050.3 Solanum lycopersicum HOM05D006509 ORTHO05D008144 4.9e-84 315.5 261 59.8
Sopen02g005330 Solanum pennellii HOM05D006509 ORTHO05D008144 1.4e-83 313.9 261 59.8
arahy.Tifrunner.gnm1.ann1.IV5K9E Arachis hypogaea HOM05D006509 ORTHO05D008144 1.9e-83 313.5 333 49.8
MBI06_g12322_MAGBIO Magnolia biondii HOM05D006509 ORTHO05D008144 4.2e-83 312.4 216 69.9
Aqoxy4G00161 Aquilegia oxysepala HOM05D006509 ORTHO05D008144 5.5e-83 312.0 300 53.7
Aa31LG8G6580 Aethionema arabicum HOM05D006509 ORTHO05D008144 7.1e-83 311.6 328 53.0
CDE07G1911 Ceratophyllum demersum HOM05D006509 ORTHO05D008144 7.1e-83 311.6 231 62.8
AUR62017665 Chenopodium quinoa HOM05D006509 ORTHO05D008144 7.9e-82 308.1 326 53.1
Migut.I00780 Erythranthe guttata HOM05D006509 ORTHO05D008144 2.3e-81 306.6 305 52.5
SalBow2G3295 Salvia bowleyana HOM05D006509 ORTHO05D008144 3.3e-80 302.8 227 63.0
AUR62014967 Chenopodium quinoa HOM05D003778 ORTHO05D004418 1.3e-79 300.8 297 55.6
MELO3C015985.2 Cucumis melo HOM05D006509 ORTHO05D008144 1.5e-77 293.9 289 54.3
SGA_v2.0_scaffold5G02679 Striga asiatica HOM05D006509 ORTHO05D008144 2.9e-76 289.7 229 60.7
ATR0618G169 Amborella trichopoda HOM05D006509 ORTHO05D008144 8.4e-76 288.1 237 59.9
Migut.I00779 Erythranthe guttata HOM05D006509 ORTHO05D008144 1.6e-71 273.9 229 59.0
Psat7g069200 Pisum sativum HOM05D006509 ORTHO05D008144 2.8e-71 273.1 296 48.6
Os02g0831200 Oryza sativa ssp. japonica HOM05D006509 ORTHO05D008144 1.3e-63 247.7 230 55.2
Zm00001eb259480 Zea mays HOM05D006509 ORTHO05D008144 6.5e-60 235.3 228 55.7
Medtr4g086490 Medicago truncatula HOM05D000001 ORTHO05D000003 1.4e-59 234.2 252 50.0
FAN10G3587 Fragaria x ananassa HOM05D006509 ORTHO05D007808 2.1e-58 230.3 182 61.5
AUR62015202 Chenopodium quinoa HOM05D006509 ORTHO05D008144 2.6e-53 213.4 158 67.1
Dinv39609 Davidia involucrata HOM05D006509 ORTHO05D008144 2.6e-53 213.4 177 62.7
Pp3c4_29820 Physcomitrium patens HOM05D006509 ORTHO05D008144 1.6e-50 204.1 244 43.4
SEGI_30002 Sequoiadendron giganteum HOM05D006509 ORTHO05D008144 2.6e-48 196.8 239 46.0
SEGI_16170 Sequoiadendron giganteum HOM05D006509 ORTHO05D008144 7.4e-48 195.3 245 45.3
COL.COLO4_35800 Corchorus olitorius HOM05D006509 ORTHO05D008144 7.0e-46 188.7 142 64.1
Mapoly0002s0264 Marchantia polymorpha HOM05D006509 ORTHO05D008144 2.0e-45 187.2 230 43.0
CBR_g57847 Chara braunii HOM05D006509 ORTHO05D008144 1.0e-44 184.9 300 36.7
unitig_747.g21717 Utricularia gibba HOM05D006509 ORTHO05D008144 1.0e-44 184.9 175 53.1
AUR62014968 Chenopodium quinoa HOM05D006509 ORTHO05D008144 1.5e-43 181.0 134 63.4
FAN10G0955 Fragaria x ananassa HOM05D006509 ORTHO05D008144 7.2e-43 178.7 199 50.3
ECA246G0117 Erigeron canadensis HOM05D006509 ORTHO05D008144 2.1e-42 177.2 129 65.9
Cc03_g14920 Coffea canephora HOM05D006509 ORTHO05D008144 1.4e-41 174.5 143 58.0
Glyma.08G117902 Glycine max HOM05D006509 ORTHO05D008144 1.5e-40 171.0 129 62.0
Cpa.g.sc63.3 Carica papaya HOM05D006509 ORTHO05D008144 1.8e-38 164.1 191 48.7
AUR62018171 Chenopodium quinoa HOM05D006509 ORTHO05D008144 5.3e-38 162.5 193 50.8
Os04g0108300 Oryza sativa ssp. japonica HOM05D006509 ORTHO05D008144 3.7e-31 139.8 137 51.1
Cc00_g35200 Coffea canephora HOM05D006509 ORTHO05D008144 1.4e-30 137.9 201 42.8
Oeu049185.1 Olea europaea HOM05D006509 ORTHO05D008144 1.6e-29 134.4 106 63.2
AagrBONN_evm.TU.Sc2ySwM_362.2130 Anthoceros agrestis HOM05D006509 ORTHO05D008144 1.3e-23 114.8 173 40.5
FAN01G0805 Fragaria x ananassa HOM05D006509 ORTHO05D008144 5.7e-16 89.4 64 65.6
Ca_19971_v3 Cicer arietinum L. HOM05D000020 ORTHO05D000156 7.5e-16 89.0 74 60.8
Oeu033605.1 Olea europaea HOM05D006509 ORTHO05D008144 9.5e-11 72.0 73 46.6


User provided reference genes

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