Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015137 Camellia sinensis var. sinensis HOM05D009561 ORTHO05D003092 1.3e-241 839.3 419 100.0
CSS0017448 Camellia sinensis var. sinensis HOM05D009561 ORTHO05D003092 9.3e-229 796.6 445 91.9
vmacro07728 Vaccinium macrocarpon HOM05D003107 ORTHO05D003092 1.1e-107 394.4 448 53.8
Dinv41472 Davidia involucrata HOM05D003107 ORTHO05D003092 6.9e-107 391.7 498 50.2
Rhsim01G0061100 Rhododendron simsii HOM05D003107 ORTHO05D003092 3.6e-103 379.4 447 53.5
Actinidia07321 Actinidia chinensis HOM05D003107 ORTHO05D003092 3.0e-86 323.2 460 47.0
QL02p089967 Quercus lobata HOM05D003107 ORTHO05D003092 5.5e-80 302.4 493 41.4
GSVIVG01015600001 Vitis vinifera HOM05D009561 ORTHO05D003092 7.0e-67 258.8 510 38.0
Thecc.09G133300 Theobroma cacao HOM05D003107 ORTHO05D003092 5.9e-66 255.8 486 39.1
CiPaw.03G248900 Carya illinoinensis HOM05D003107 ORTHO05D003092 4.2e-64 249.6 489 39.5
Duzib187G1951 Durio zibethinus HOM05D003107 ORTHO05D003092 3.0e-62 243.4 484 38.4
Gohir.A06G053600 Gossypium hirsutum HOM05D003107 ORTHO05D003092 4.0e-62 243.0 418 41.1
Haze_25496 Corylus avellana HOM05D009561 ORTHO05D003092 1.5e-61 241.1 503 36.8
TAR636G3294 Trochodendron aralioides HOM05D003107 ORTHO05D003092 7.5e-61 238.8 561 34.0
Potri.018G125500 Populus trichocarpa HOM05D003107 ORTHO05D003092 3.7e-60 236.5 495 38.8
Gorai.010G061400 Gossypium raimondii HOM05D003107 ORTHO05D003092 1.8e-59 234.2 478 38.1
Potri.T125307 Populus trichocarpa HOM05D003107 ORTHO05D003092 1.8e-59 234.2 495 38.6
Hma1.2p1_0497F.1_g166410 Hydrangea macrophylla HOM05D003107 ORTHO05D003092 2.4e-59 233.8 310 47.1
Gohir.D06G052900 Gossypium hirsutum HOM05D003107 ORTHO05D003092 4.1e-59 233.0 362 43.4
Nn8g39562 Nelumbo nucifera HOM05D003107 ORTHO05D003092 1.2e-58 231.5 507 37.7
Peaxi162Scf00088g01215 Petunia axillaris HOM05D009561 ORTHO05D003092 2.3e-57 227.3 474 39.0
CAN.G763.8 Capsicum annuum HOM05D009561 ORTHO05D003092 6.6e-57 225.7 486 38.7
Nitab4.5_0000374g0120 Nicotiana tabacum HOM05D009561 ORTHO05D003092 7.3e-56 222.2 474 39.9
Sabra18G0106800 Salix brachista HOM05D003107 ORTHO05D003092 3.0e-54 216.9 493 36.7
Manes.06G046500 Manihot esculenta HOM05D003107 ORTHO05D003092 6.8e-54 215.7 500 34.6
Cfa002924 Carpinus fangiana HOM05D003107 ORTHO05D003092 6.4e-52 209.1 479 35.9
Nitab4.5_0003393g0030 Nicotiana tabacum HOM05D009561 ORTHO05D003092 1.0e-49 201.8 386 39.9
Aqoxy7G03629 Aquilegia oxysepala HOM05D003107 ORTHO05D003092 5.8e-45 186.0 421 34.7
Cpa.g.sc46.47 Carica papaya HOM05D003107 ORTHO05D003092 2.9e-44 183.7 281 43.1
Lalb_Chr08g0234601 Lupinus albus HOM05D003107 ORTHO05D003092 4.9e-44 183.0 450 33.6
Sc18g0000310 Simmondsia chinensis HOM05D003107 ORTHO05D003092 6.6e-41 172.6 438 34.0
Ciclev10007677m.g Citrus clementina HOM05D003107 ORTHO05D003092 8.6e-41 172.2 369 38.8
ECA234G1222 Erigeron canadensis HOM05D003107 ORTHO05D003092 4.7e-39 166.4 451 33.9
Solyc07g007840.3 Solanum lycopersicum HOM05D009561 ORTHO05D003092 1.5e-37 161.4 488 33.0
ATR0800G121 Amborella trichopoda HOM05D003107 ORTHO05D003092 5.8e-37 159.5 479 28.4
Oeu052756.1 Olea europaea HOM05D009561 ORTHO05D003092 2.4e-35 154.1 456 32.7
Sopen07g003740 Solanum pennellii HOM05D009561 ORTHO05D003092 7.1e-35 152.5 470 33.4
Ah.09g224690 Amaranthus hybridus HOM05D009561 ORTHO05D003092 1.2e-34 151.8 318 34.0
AUR62011180 Chenopodium quinoa HOM05D003107 ORTHO05D003092 2.7e-34 150.6 464 29.7
CDE04G1135 Ceratophyllum demersum HOM05D003107 ORTHO05D003092 7.8e-34 149.1 463 30.9
HanXRQChr12g0356791 Helianthus annuus HOM05D003107 ORTHO05D003092 3.9e-33 146.7 227 44.9
HPP92_010519 Vanilla planifolia HOM05D003107 ORTHO05D003092 5.6e-32 142.9 102 66.7
Lsat_1_v5_gn_5_93901 Lactuca sativa HOM05D003107 ORTHO05D003092 2.1e-31 141.0 206 42.2
AUR62013303 Chenopodium quinoa HOM05D003107 ORTHO05D003092 3.6e-31 140.2 459 30.5
Os04g0644675 Oryza sativa ssp. japonica HOM05D003107 ORTHO05D003092 7.8e-26 122.5 105 54.3
Lj6g0021163 Lotus japonicus HOM05D003107 ORTHO05D003092 2.5e-24 117.5 195 42.6
Actinidia21947 Actinidia chinensis HOM05D009561 ORTHO05D003092 9.6e-24 115.5 226 40.7
TPR.G9542 Trifolium pratense HOM05D003107 ORTHO05D003092 2.4e-22 110.9 100 52.0
ATR0772G192 Amborella trichopoda HOM05D009561 ORTHO05D003092 5.2e-22 109.8 213 34.3
Psat1g127320 Pisum sativum HOM05D009561 ORTHO05D003092 1.5e-21 108.2 123 48.0
QL02p090018 Quercus lobata HOM05D009561 ORTHO05D003092 6.0e-18 96.3 78 65.4
Medtr6g033205 Medicago truncatula HOM05D009561 ORTHO05D003092 1.3e-17 95.1 110 47.3
SHI33553 Sapria himalayana HOM05D014003 ORTHO05D016381 8.7e-17 92.4 376 27.7
Psat1g024000 Pisum sativum HOM05D003107 ORTHO05D003092 2.8e-15 87.4 129 38.8
CDE06G0534 Ceratophyllum demersum HOM05D003107 ORTHO05D003092 1.8e-14 84.7 325 29.2
SEGI_27893 Sequoiadendron giganteum HOM05D003107 ORTHO05D003092 1.2e-13 82.0 104 38.5
Psat1g023960 Pisum sativum HOM05D003107 ORTHO05D003092 2.6e-13 80.9 131 35.9
SHI25697 Sapria himalayana HOM05D009561 ORTHO05D003092 6.4e-12 76.3 50 66.0
Thecc.09G326100 Theobroma cacao HOM05D009561 ORTHO05D016381 8.4e-12 75.9 161 35.4
TAR624G0993 Trochodendron aralioides HOM05D003107 ORTHO05D003092 1.9e-11 74.7 87 39.1
SHI41186 Sapria himalayana HOM05D009561 ORTHO05D003092 4.2e-11 73.6 60 61.7
PSO170G1884 Papaver somniferum HOM05D003107 ORTHO05D003092 5.4e-11 73.2 316 25.3
GSVIVG01035723001 Vitis vinifera HOM05D003107 ORTHO05D003092 2.7e-10 70.9 87 36.8
SalBow8G1653 Salvia bowleyana HOM05D003107 ORTHO05D003092 3.5e-10 70.5 331 25.4
Aqoxy1G02257 Aquilegia oxysepala HOM05D003107 ORTHO05D003092 6.0e-10 69.7 206 26.7
SalBow8G2039 Salvia bowleyana HOM05D003107 ORTHO05D003092 1.0e-09 68.9 343 25.7
ATR0037G033 Amborella trichopoda HOM05D003107 ORTHO05D003092 2.3e-09 67.8 102 30.4
SHI41184 Sapria himalayana HOM05D009561 ORTHO05D003092 3.0e-09 67.4 57 61.4
Zm00001eb205470 Zea mays HOM05D003107 ORTHO05D003092 5.1e-09 66.6 310 23.9
Zm00001eb240410 Zea mays HOM05D003107 ORTHO05D003092 6.7e-09 66.2 100 36.0
Actinidia13287 Actinidia chinensis HOM05D003107 ORTHO05D003092 8.7e-09 65.9 97 33.0
Os02g0208600 Oryza sativa ssp. japonica HOM05D003107 ORTHO05D003092 8.7e-09 65.9 115 31.3
PSO017G1142 Papaver somniferum HOM05D003107 ORTHO05D003092 1.1e-08 65.5 316 24.7
CsaV3_3G046670 Cucumis sativus L. HOM05D003107 ORTHO05D003092 2.5e-08 64.3 390 25.1
Sabra06G0193100 Salix brachista HOM05D003107 ORTHO05D003092 2.5e-08 64.3 320 25.6
vmacro05445 Vaccinium macrocarpon HOM05D003107 ORTHO05D003092 2.5e-08 64.3 346 25.1
HanXRQChr13g0409611 Helianthus annuus HOM05D003107 ORTHO05D003092 5.6e-08 63.2 304 25.0
MD15G1115600 Malus domestica HOM05D003107 ORTHO05D003092 9.6e-08 62.4 300 25.0
Ca_15699_v3 Cicer arietinum L. HOM05D003107 ORTHO05D003092 1.6e-07 61.6 294 24.1
PGR031G3499 Punica granatum HOM05D003107 ORTHO05D003092 1.6e-07 61.6 137 30.7
AagrBONN_evm.TU.Sc2ySwM_344.4237 Anthoceros agrestis HOM05D003107 ORTHO05D003092 2.1e-07 61.2 132 29.5
HPP92_014684 Vanilla planifolia HOM05D003107 ORTHO05D003092 2.1e-07 61.2 98 32.7
TAR383G1012 Trochodendron aralioides HOM05D003107 ORTHO05D003092 2.8e-07 60.8 131 30.5
Psat5g027640 Pisum sativum HOM05D003107 ORTHO05D003092 3.7e-07 60.5 305 25.6
RcHm_v2.0_Chr6g0312791 Rosa chinensis HOM05D003107 ORTHO05D003092 3.7e-07 60.5 97 34.0
TPR.G34688 Trifolium pratense HOM05D003107 ORTHO05D003092 3.7e-07 60.5 315 24.4
CANSAT25G0565 Cannabis sativa HOM05D003107 ORTHO05D003092 4.8e-07 60.1 311 23.2
Eucgr.C01815 Eucalyptus grandis HOM05D003107 ORTHO05D003092 4.8e-07 60.1 87 36.8
Rhsim02G0187500 Rhododendron simsii HOM05D003107 ORTHO05D003092 4.8e-07 60.1 224 23.7
SGA_v2.0_scaffold27G11488 Striga asiatica HOM05D003107 ORTHO05D003092 8.1e-07 59.3 116 31.0
Lj7A713T53 Lonicera japonica HOM05D003107 ORTHO05D003092 1.4e-06 58.5 93 37.6
Os06g0595900 Oryza sativa ssp. japonica HOM05D003107 ORTHO05D003092 1.4e-06 58.5 100 34.0
Potri.006G246800 Populus trichocarpa HOM05D003107 ORTHO05D003092 1.4e-06 58.5 227 26.0
Atru.chr7.2327 Acer truncatum HOM05D003107 ORTHO05D003092 2.4e-06 57.8 211 24.2
BcaB06g28082 Brassica carinata HOM05D003107 ORTHO05D003092 3.1e-06 57.4 125 32.0
Cfa013207 Carpinus fangiana HOM05D003107 ORTHO05D003092 3.1e-06 57.4 96 33.3
Haze_21621 Corylus avellana HOM05D003107 ORTHO05D003092 3.1e-06 57.4 96 33.3
CSS0021250 Camellia sinensis var. sinensis HOM05D003107 ORTHO05D003092 4.0e-06 57.0 237 27.8
VMungo1309G0300 Vigna mungo HOM05D003107 ORTHO05D003092 4.0e-06 57.0 328 22.3
arahy.Tifrunner.gnm1.ann1.YCI793 Arachis hypogaea HOM05D003107 ORTHO05D003092 5.3e-06 56.6 94 30.9
Lj1g0004393 Lotus japonicus HOM05D003107 ORTHO05D003092 5.3e-06 56.6 127 34.6
Manes.03G065000 Manihot esculenta HOM05D003107 ORTHO05D003092 6.9e-06 56.2 304 23.0
THA.LOC104815043 Tarenaya hassleriana HOM05D003107 ORTHO05D003092 6.9e-06 56.2 183 27.9
AT2G25640 Arabidopsis thaliana HOM05D003107 ORTHO05D003092 9.0e-06 55.8 93 34.4
MSTRG.14000 Avicennia marina HOM05D003107 ORTHO05D003092 9.0e-06 55.8 221 25.3
Lalb_Chr08g0243801 Lupinus albus HOM05D003107 ORTHO05D003092 9.0e-06 55.8 329 26.7


User provided reference genes

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