Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015121 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 2.2e-169 599.0 327 100.0
Dinv37265 Davidia involucrata HOM05D004499 ORTHO05D004928 1.9e-88 330.1 326 60.7
Hma1.2p1_0111F.1_g054000 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 1.9e-72 276.9 334 52.4
Hma1.2p1_0350F.1_g132810 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 2.2e-68 263.5 330 52.1
Haze_20629 Corylus avellana HOM05D004499 ORTHO05D004928 1.4e-67 260.8 329 51.1
TAR623G0879 Trochodendron aralioides HOM05D004499 ORTHO05D004928 2.1e-66 256.9 335 49.6
Prupe.6G240400 Prunus persica HOM05D004499 ORTHO05D004928 6.7e-65 251.9 336 49.7
CSS0037383 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 2.5e-64 250.0 332 50.9
CSS0026303 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 3.3e-64 249.6 332 50.9
MD04G1102600 Malus domestica HOM05D004499 ORTHO05D004928 1.3e-63 247.7 335 47.8
Cfa017521 Carpinus fangiana HOM05D004499 ORTHO05D004928 1.2e-61 241.1 328 49.1
CiPaw.09G179000 Carya illinoinensis HOM05D004499 ORTHO05D004928 2.0e-61 240.4 329 50.8
Duzib093G0117 Durio zibethinus HOM05D004499 ORTHO05D004928 1.4e-59 234.2 331 48.3
Thecc.05G055800 Theobroma cacao HOM05D004499 ORTHO05D004928 9.3e-59 231.5 340 47.9
Manes.09G078863 Manihot esculenta HOM05D004499 ORTHO05D004928 1.8e-57 227.3 332 47.3
Sabra06G0102500 Salix brachista HOM05D004499 ORTHO05D004928 3.0e-57 226.5 329 45.9
Potri.006G130500 Populus trichocarpa HOM05D004499 ORTHO05D004928 1.9e-56 223.8 331 45.3
CANSAT80G2505 Cannabis sativa HOM05D004499 ORTHO05D004928 2.5e-56 223.4 355 44.2
ClCG10G020450 Citrullus lanatus HOM05D004499 ORTHO05D004928 3.3e-56 223.0 352 46.3
Gohir.A04G075800 Gossypium hirsutum HOM05D004499 ORTHO05D004928 7.4e-56 221.9 333 46.8
Nn2g10698 Nelumbo nucifera HOM05D004499 ORTHO05D004928 2.2e-55 220.3 333 43.5
Rhsim04G0149000 Rhododendron simsii HOM05D004499 ORTHO05D004928 2.2e-55 220.3 363 44.1
Atru.chr8.1895 Acer truncatum HOM05D004499 ORTHO05D004928 1.4e-54 217.6 320 47.2
TWI53G1356 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 1.4e-54 217.6 344 45.9
CiPaw.10G136800 Carya illinoinensis HOM05D004499 ORTHO05D004928 1.8e-54 217.2 337 46.0
Gorai.009G419500 Gossypium raimondii HOM05D004499 ORTHO05D004928 4.1e-54 216.1 333 45.9
QL07p045089 Quercus lobata HOM05D004499 ORTHO05D004928 2.0e-53 213.8 338 46.4
Gohir.D09G147000 Gossypium hirsutum HOM05D004499 ORTHO05D004928 5.0e-52 209.1 324 45.4
DCAR_014968 Daucus carota HOM05D004499 ORTHO05D004928 6.5e-52 208.8 310 47.4
RcHm_v2.0_Chr3g0469011 Rosa chinensis HOM05D004499 ORTHO05D004928 6.5e-52 208.8 354 45.5
Gorai.006G168200 Gossypium raimondii HOM05D004499 ORTHO05D004928 8.5e-52 208.4 326 45.1
FAN05G3415 Fragaria x ananassa HOM05D004499 ORTHO05D004928 1.9e-51 207.2 353 45.0
FAN02G0924 Fragaria x ananassa HOM05D004499 ORTHO05D004928 3.2e-51 206.5 351 45.6
MELO3C009326.2 Cucumis melo HOM05D004499 ORTHO05D004928 4.2e-51 206.1 350 44.3
FAN09G3365 Fragaria x ananassa HOM05D004499 ORTHO05D004928 1.6e-50 204.1 356 45.5
FvH4_6g15510 Fragaria vesca HOM05D004499 ORTHO05D004928 2.1e-50 203.8 356 45.5
FAN14G2800 Fragaria x ananassa HOM05D004499 ORTHO05D004928 2.1e-50 203.8 356 45.5
Gohir.A09G151400 Gossypium hirsutum HOM05D004499 ORTHO05D004928 2.7e-50 203.4 324 44.4
Potri.016G086900 Populus trichocarpa HOM05D004499 ORTHO05D004928 1.4e-49 201.1 336 44.6
Sed0022446 Sechium edule HOM05D004499 ORTHO05D004928 1.8e-49 200.7 340 44.1
Cc06_g03680 Coffea canephora HOM05D004499 ORTHO05D004928 1.5e-48 197.6 361 42.1
Sabra16G0093100 Salix brachista HOM05D004499 ORTHO05D004928 2.0e-48 197.2 331 42.6
Cpa.g.sc174.12 Carica papaya HOM05D004499 ORTHO05D004928 9.7e-48 194.9 324 45.7
Dinv35728 Davidia involucrata HOM05D004499 ORTHO05D004928 9.7e-48 194.9 203 57.6
Nn2g13028 Nelumbo nucifera HOM05D004499 ORTHO05D004928 2.2e-47 193.7 348 40.8
GSVIVG01025644001 Vitis vinifera HOM05D004499 ORTHO05D004928 3.7e-47 193.0 326 44.2
CsaV3_3G035670 Cucumis sativus L. HOM05D004499 ORTHO05D004928 4.8e-47 192.6 363 41.3
MSTRG.19143 Avicennia marina HOM05D004499 ORTHO05D004928 9.1e-46 188.3 347 42.1
THA.LOC104806496 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 9.1e-46 188.3 325 40.9
Lalb_Chr25g0289231 Lupinus albus HOM05D004499 ORTHO05D004928 2.0e-45 187.2 348 44.3
Sed0006356 Sechium edule HOM05D004499 ORTHO05D004928 3.4e-45 186.4 339 42.8
TWI77G0862 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 3.4e-45 186.4 328 44.8
SalBow3G3210 Salvia bowleyana HOM05D004499 ORTHO05D004928 7.7e-45 185.3 348 44.0
MD12G1122400 Malus domestica HOM05D004499 ORTHO05D004928 1.3e-44 184.5 335 39.7
Lalb_Chr01g0018981 Lupinus albus HOM05D004499 ORTHO05D004928 7.9e-42 175.3 346 41.3
Glyma.03G178700 Glycine max HOM05D004499 ORTHO05D004928 1.4e-41 174.5 310 43.9
Manes.08G004127 Manihot esculenta HOM05D004499 ORTHO05D004928 1.8e-41 174.1 228 49.6
Manes.08G004131 Manihot esculenta HOM05D004499 ORTHO05D004928 1.8e-41 174.1 228 49.6
Oeu029418.1 Olea europaea HOM05D004499 ORTHO05D004928 5.1e-41 172.6 330 40.3
Aqoxy4G03228 Aquilegia oxysepala HOM05D004499 ORTHO05D004928 6.7e-41 172.2 352 38.9
Manes.08G004109 Manihot esculenta HOM05D004499 ORTHO05D004928 1.1e-40 171.4 228 49.1
Manes.08G004114 Manihot esculenta HOM05D004499 ORTHO05D004928 1.1e-40 171.4 228 49.1
Manes.08G004117 Manihot esculenta HOM05D004499 ORTHO05D004928 1.1e-40 171.4 228 49.1
Manes.08G004120 Manihot esculenta HOM05D004499 ORTHO05D004928 1.1e-40 171.4 228 49.1
Glyma.19G179400 Glycine max HOM05D004499 ORTHO05D004928 1.5e-40 171.0 315 41.3
Lj1g0000961 Lotus japonicus HOM05D004499 ORTHO05D004928 2.0e-40 170.6 322 42.5
Manes.08G004126 Manihot esculenta HOM05D004499 ORTHO05D004928 2.0e-40 170.6 228 49.1
VMungo1383G2757 Vigna mungo HOM05D004499 ORTHO05D004928 1.3e-39 167.9 323 41.5
Medtr7g100830 Medicago truncatula HOM05D004499 ORTHO05D004928 3.7e-39 166.4 322 39.8
MSTRG.26719 Avicennia marina HOM05D004499 ORTHO05D004928 1.8e-38 164.1 323 39.3
Glyma.13G138000 Glycine max HOM05D004499 ORTHO05D004928 3.1e-38 163.3 339 40.7
Oeu038974.1 Olea europaea HOM05D004499 ORTHO05D004928 1.2e-37 161.4 381 36.2
Psat3g044200 Pisum sativum HOM05D004499 ORTHO05D004928 1.2e-37 161.4 335 45.7
Lsat_1_v5_gn_6_30120 Lactuca sativa HOM05D004499 ORTHO05D004928 2.0e-37 160.6 328 44.5
Sc20g0005110 Simmondsia chinensis HOM05D004499 ORTHO05D004928 2.0e-37 160.6 329 39.5
PGSC0003DMG400001742 Solanum tuberosum HOM05D004499 ORTHO05D004928 2.0e-37 160.6 314 42.4
Glyma.10G050500 Glycine max HOM05D004499 ORTHO05D004928 3.5e-37 159.8 334 41.0
Duzib106G0876 Durio zibethinus HOM05D004499 ORTHO05D004928 8.5e-36 155.2 330 37.3
RhsimUnG0115800 Rhododendron simsii HOM05D004499 ORTHO05D004928 8.5e-36 155.2 280 43.6
Lj5g0026303 Lotus japonicus HOM05D004499 ORTHO05D004928 1.1e-35 154.8 341 42.2
Phvul.001G175400 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 1.1e-35 154.8 317 40.7
Phvul.007G164800 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 5.5e-35 152.5 332 39.5
Medtr1g066750 Medicago truncatula HOM05D004499 ORTHO05D004928 1.6e-34 151.0 319 42.9
Ca_08832_v3 Cicer arietinum L. HOM05D004499 ORTHO05D004928 2.1e-34 150.6 327 44.6
PGR004G1454 Punica granatum HOM05D004499 ORTHO05D004928 1.8e-33 147.5 364 34.6
Thhalv10016942m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 5.2e-33 146.0 323 35.3
Actinidia40043 Actinidia chinensis HOM05D004499 ORTHO05D004928 8.8e-33 145.2 325 38.2
Manes.12G048251 Manihot esculenta HOM05D004499 ORTHO05D004928 1.5e-32 144.4 206 47.1
Migut.J00423 Erythranthe guttata HOM05D004499 ORTHO05D004928 2.0e-32 144.1 350 37.1
Manes.08G004906 Manihot esculenta HOM05D004499 ORTHO05D004928 2.0e-32 144.1 206 47.1
Solyc09g007470.2 Solanum lycopersicum HOM05D004499 ORTHO05D004928 5.7e-32 142.5 312 39.1
unitig_26.g9218 Utricularia gibba HOM05D004499 ORTHO05D004928 5.7e-32 142.5 327 39.4
CARHR131610 Cardamine hirsuta HOM05D004499 ORTHO05D004928 8.2e-31 138.7 330 35.8
Sopen00g013370 Solanum pennellii HOM05D004499 ORTHO05D004928 1.1e-30 138.3 312 39.4
MSTRG.10304 Avicennia marina HOM05D004499 ORTHO05D004928 1.4e-30 137.9 339 35.7
Manes.05G197001 Manihot esculenta HOM05D004499 ORTHO05D004928 1.4e-30 137.9 206 46.6
Gohir.D04G114901 Gossypium hirsutum HOM05D004499 ORTHO05D004928 4.1e-30 136.3 190 46.8
ClCG04G008860 Citrullus lanatus HOM05D004499 ORTHO05D004928 1.2e-29 134.8 322 35.7
Manes.05G197300 Manihot esculenta HOM05D004499 ORTHO05D004928 1.0e-28 131.7 262 40.1
AUR62042302 Chenopodium quinoa HOM05D004499 ORTHO05D004928 1.3e-28 131.3 334 36.5
Oeu059988.1 Olea europaea HOM05D004499 ORTHO05D004928 1.9e-27 127.5 428 32.7
Sp4g19420 Schrenkiella parvula HOM05D004499 ORTHO05D004928 2.5e-27 127.1 327 33.9
Oeu060092.2 Olea europaea HOM05D000784 ORTHO05D004928 5.5e-27 125.9 327 33.6
SGA_v2.0_scaffold126G33909 Striga asiatica HOM05D004499 ORTHO05D004928 7.2e-27 125.6 315 35.9
THA.LOC104826978 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 9.4e-27 125.2 329 36.8
ECA233G0353 Erigeron canadensis HOM05D004499 ORTHO05D004928 4.7e-26 122.9 305 41.6
Ah.15g092180 Amaranthus hybridus HOM05D004499 ORTHO05D004928 1.4e-25 121.3 197 41.6
MELO3C014257.2 Cucumis melo HOM05D004499 ORTHO05D004928 1.4e-25 121.3 326 34.7
AL4G33450 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 1.8e-25 120.9 329 35.0
DCAR_009280 Daucus carota HOM05D004499 ORTHO05D004928 1.8e-25 120.9 313 37.4
Lsat_1_v5_gn_1_54160 Lactuca sativa HOM05D004499 ORTHO05D004928 3.0e-25 120.2 309 35.6
Lalb_Chr20g0112851 Lupinus albus HOM05D004499 ORTHO05D004928 4.0e-25 119.8 326 36.8
SHI12538 Sapria himalayana HOM05D004499 ORTHO05D004928 4.0e-25 119.8 309 35.9
Aa31LG5G22320 Aethionema arabicum HOM05D004499 ORTHO05D004928 6.8e-25 119.0 324 34.0
C04p10830 Brassica napus HOM05D004499 ORTHO05D004928 2.6e-24 117.1 325 33.5
BcaC02g11837 Brassica carinata HOM05D004499 ORTHO05D004928 3.4e-24 116.7 324 34.6
BolC4t22678H Brassica oleracea HOM05D004499 ORTHO05D004928 3.4e-24 116.7 324 34.9
Psat6g070200 Pisum sativum HOM05D004499 ORTHO05D004928 3.4e-24 116.7 310 36.5
A05p08740 Brassica napus HOM05D004499 ORTHO05D004928 5.7e-24 115.9 325 34.8
BcaB02g09303 Brassica carinata HOM05D004499 ORTHO05D004928 2.2e-23 114.0 331 32.6
CARHR210240 Cardamine hirsuta HOM05D004499 ORTHO05D004928 2.2e-23 114.0 322 35.4
BraA05t19842Z Brassica rapa HOM05D004499 ORTHO05D004928 3.7e-23 113.2 326 33.4
AT2G37100 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 8.3e-23 112.1 329 34.3
Peaxi162Scf00005g04016 Petunia axillaris HOM05D004499 ORTHO05D004928 8.3e-23 112.1 159 58.5
CsaV3_6G039360 Cucumis sativus L. HOM05D004499 ORTHO05D004928 1.8e-22 110.9 335 32.2
COL.COLO4_27061 Corchorus olitorius HOM05D004499 ORTHO05D004928 3.1e-22 110.2 78 74.4
Carub.0004s1899 Capsella rubella HOM05D004499 ORTHO05D004928 9.1e-22 108.6 312 34.0
Thhalv10014228m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 1.6e-21 107.8 330 35.2
C02p00790 Brassica napus HOM05D004499 ORTHO05D004928 2.0e-21 107.5 324 33.0
BolC2t06077H Brassica oleracea HOM05D004499 ORTHO05D004928 2.0e-21 107.5 324 33.0
AL6G12390 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 4.5e-21 106.3 322 34.8
BcaC03g13031 Brassica carinata HOM05D004499 ORTHO05D004928 4.5e-21 106.3 324 33.0
BcaB05g21851 Brassica carinata HOM05D004499 ORTHO05D004928 5.9e-21 105.9 338 33.4
THA.LOC104816329 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 5.9e-21 105.9 332 34.6
HanXRQChr02g0051991 Helianthus annuus HOM05D004499 ORTHO05D004928 1.0e-20 105.1 142 54.9
Sp6g39600 Schrenkiella parvula HOM05D004499 ORTHO05D004928 1.0e-20 105.1 327 35.2
AT5G03110 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 1.3e-20 104.8 319 33.2
AUR62040029 Chenopodium quinoa HOM05D004499 ORTHO05D004928 1.3e-20 104.8 321 37.7
Sc02g0001920 Simmondsia chinensis HOM05D004499 ORTHO05D004928 1.5e-19 101.3 313 32.3
PSO339G1230 Papaver somniferum HOM05D004499 ORTHO05D004928 7.2e-19 99.0 313 33.5
Sed0011318 Sechium edule HOM05D004499 ORTHO05D004928 7.2e-19 99.0 216 39.4
Actinidia14388 Actinidia chinensis HOM05D004499 ORTHO05D004928 9.4e-19 98.6 129 49.6
PSO063G6372 Papaver somniferum HOM05D004499 ORTHO05D004928 8.0e-18 95.5 319 33.2
TPR.G36959 Trifolium pratense HOM05D004499 ORTHO05D004928 4.0e-17 93.2 74 66.2
PSO384G2831 Papaver somniferum HOM05D004499 ORTHO05D004928 5.2e-17 92.8 316 33.5
Carub.0006s0191 Capsella rubella HOM05D004499 ORTHO05D004928 2.0e-16 90.9 318 34.0
SGA_v2.0_scaffold94G28675 Striga asiatica HOM05D004499 ORTHO05D004928 2.0e-16 90.9 309 32.7
BraA02t04744Z Brassica rapa HOM05D004499 ORTHO05D004928 5.7e-16 89.4 329 30.7
AUR62044753 Chenopodium quinoa HOM05D004499 ORTHO05D004928 1.7e-15 87.8 316 32.3
PSO339G0805 Papaver somniferum HOM05D004499 ORTHO05D004928 4.9e-15 86.3 337 33.5
Nn4g25115 Nelumbo nucifera HOM05D004499 ORTHO05D004928 1.3e-12 78.2 139 38.1
HPP92_001043 Vanilla planifolia HOM05D004499 ORTHO05D004928 1.3e-12 78.2 226 34.1
MBI05_g41566_MAGBIO Magnolia biondii HOM05D060308 ORTHO05D004928 1.6e-10 71.2 144 38.2
EL10Ac7g16510 Beta vulgaris HOM05D007360 ORTHO05D008235 1.0e-09 68.6 221 32.6
Actinidia04644 Actinidia chinensis HOM05D007360 ORTHO05D008235 4.4e-08 63.2 105 44.8


User provided reference genes

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